FF:10195-103E6: Difference between revisions

Latest revision as of 12:26, 3 June 2020

Name:	olfactory region, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12611
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	olfactory apparatus
dev stage	NA
sex	female
age	87
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234063-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004856

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12611		CAGE		DRX008695		DRR009567

Accession ID Hg19

Library id		BAM		CTSS
CNhs12611		DRZ000992		DRZ002377

Accession ID Hg38

Library id		BAM		CTSS
CNhs12611		DRZ012342		DRZ013727

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.39
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.52
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.314
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.065
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.216
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.491
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.065
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.122
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00552
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.257
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.327
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.172
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.065
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.175
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.707
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.065
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0124
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0486
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.122
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.122
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0258
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.847
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.065
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.122
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.39
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.065
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.122
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.573
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.592
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0128
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0769
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.626
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.065
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.443
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.43
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.54
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.796
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.823
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.122
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.172
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.172
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.702
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.513
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.172
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.468
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.065
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.065
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.513
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12611

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0327
MA0003.1	MA0003.1	0.299
MA0004.1	MA0004.1	0.332
MA0006.1	MA0006.1	0.282
MA0007.1	MA0007.1	0.205
MA0009.1	MA0009.1	0.155
MA0014.1	MA0014.1	0.565
MA0017.1	MA0017.1	0.00183
MA0018.2	MA0018.2	0.391
MA0019.1	MA0019.1	0.774
MA0024.1	MA0024.1	0.912
MA0025.1	MA0025.1	0.67
MA0027.1	MA0027.1	0.647
MA0028.1	MA0028.1	0.0364
MA0029.1	MA0029.1	0.0135
MA0030.1	MA0030.1	0.74
MA0031.1	MA0031.1	0.523
MA0035.2	MA0035.2	0.00779
MA0038.1	MA0038.1	0.496
MA0039.2	MA0039.2	0.0913
MA0040.1	MA0040.1	0.887
MA0041.1	MA0041.1	0.78
MA0042.1	MA0042.1	0.952
MA0043.1	MA0043.1	0.513
MA0046.1	MA0046.1	0.00206
MA0047.2	MA0047.2	0.0242
MA0048.1	MA0048.1	0.111
MA0050.1	MA0050.1	0.0178
MA0051.1	MA0051.1	0.0851
MA0052.1	MA0052.1	0.771
MA0055.1	MA0055.1	0.00109
MA0057.1	MA0057.1	1
MA0058.1	MA0058.1	0.264
MA0059.1	MA0059.1	0.0844
MA0060.1	MA0060.1	0.882
MA0061.1	MA0061.1	0.00564
MA0062.2	MA0062.2	0.00129
MA0065.2	MA0065.2	6.53584e-4
MA0066.1	MA0066.1	0.0159
MA0067.1	MA0067.1	0.966
MA0068.1	MA0068.1	0.56
MA0069.1	MA0069.1	0.488
MA0070.1	MA0070.1	0.674
MA0071.1	MA0071.1	0.0221
MA0072.1	MA0072.1	0.174
MA0073.1	MA0073.1	0.426
MA0074.1	MA0074.1	0.217
MA0076.1	MA0076.1	0.071
MA0077.1	MA0077.1	0.31
MA0078.1	MA0078.1	0.858
MA0079.2	MA0079.2	0.633
MA0080.2	MA0080.2	2.50156e-9
MA0081.1	MA0081.1	0.0254
MA0083.1	MA0083.1	0.025
MA0084.1	MA0084.1	0.777
MA0087.1	MA0087.1	0.755
MA0088.1	MA0088.1	0.156
MA0090.1	MA0090.1	0.303
MA0091.1	MA0091.1	0.586
MA0092.1	MA0092.1	0.429
MA0093.1	MA0093.1	0.327
MA0099.2	MA0099.2	3.45179e-20
MA0100.1	MA0100.1	0.551
MA0101.1	MA0101.1	7.31694e-4
MA0102.2	MA0102.2	0.0483
MA0103.1	MA0103.1	0.23
MA0104.2	MA0104.2	0.403
MA0105.1	MA0105.1	0.00161
MA0106.1	MA0106.1	0.0228
MA0107.1	MA0107.1	0.00149
MA0108.2	MA0108.2	0.254
MA0111.1	MA0111.1	0.549
MA0112.2	MA0112.2	0.00108
MA0113.1	MA0113.1	0.286
MA0114.1	MA0114.1	0.00239
MA0115.1	MA0115.1	0.742
MA0116.1	MA0116.1	0.00696
MA0117.1	MA0117.1	0.894
MA0119.1	MA0119.1	0.0839
MA0122.1	MA0122.1	0.6
MA0124.1	MA0124.1	0.596
MA0125.1	MA0125.1	0.351
MA0131.1	MA0131.1	0.852
MA0135.1	MA0135.1	0.0665
MA0136.1	MA0136.1	1.47971e-14
MA0137.2	MA0137.2	0.252
MA0138.2	MA0138.2	0.204
MA0139.1	MA0139.1	0.407
MA0140.1	MA0140.1	2.89402e-4
MA0141.1	MA0141.1	0.00705
MA0142.1	MA0142.1	0.965
MA0143.1	MA0143.1	0.523
MA0144.1	MA0144.1	0.213
MA0145.1	MA0145.1	0.172
MA0146.1	MA0146.1	0.012
MA0147.1	MA0147.1	0.288
MA0148.1	MA0148.1	0.0492
MA0149.1	MA0149.1	0.017
MA0150.1	MA0150.1	7.09415e-5
MA0152.1	MA0152.1	0.651
MA0153.1	MA0153.1	0.128
MA0154.1	MA0154.1	0.048
MA0155.1	MA0155.1	0.643
MA0156.1	MA0156.1	1.53101e-9
MA0157.1	MA0157.1	0.317
MA0159.1	MA0159.1	0.00568
MA0160.1	MA0160.1	0.0097
MA0162.1	MA0162.1	0.14
MA0163.1	MA0163.1	2.4137e-5
MA0164.1	MA0164.1	0.827
MA0258.1	MA0258.1	0.0124
MA0259.1	MA0259.1	0.81

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12611

Novel motif	Logo	P-value
1	1	0.0512
10	10	0.0448
100	100	0.309
101	101	0.416
102	102	0.751
103	103	0.209
104	104	0.156
105	105	0.117
106	106	0.0453
107	107	0.13
108	108	0.905
109	109	0.00273
11	11	0.0127
110	110	0.0495
111	111	0.152
112	112	0.51
113	113	0.395
114	114	0.212
115	115	0.918
116	116	0.233
117	117	0.00954
118	118	0.151
119	119	0.227
12	12	0.472
120	120	0.253
121	121	0.291
122	122	0.922
123	123	0.788
124	124	0.0747
125	125	0.2
126	126	0.0223
127	127	0.598
128	128	0.241
129	129	0.574
13	13	7.90152e-4
130	130	0.16
131	131	0.121
132	132	0.59
133	133	0.0329
134	134	0.511
135	135	0.172
136	136	0.002
137	137	0.751
138	138	0.876
139	139	0.19
14	14	0.785
140	140	0.653
141	141	0.649
142	142	0.952
143	143	0.0683
144	144	0.949
145	145	0.103
146	146	0.415
147	147	0.767
148	148	0.299
149	149	0.336
15	15	0.0598
150	150	0.142
151	151	0.617
152	152	0.0765
153	153	0.909
154	154	0.46
155	155	0.748
156	156	0.332
157	157	0.437
158	158	0.206
159	159	0.0126
16	16	0.0537
160	160	0.285
161	161	0.286
162	162	0.7
163	163	0.745
164	164	0.0394
165	165	0.0379
166	166	0.914
167	167	0.821
168	168	0.542
169	169	0.0107
17	17	0.154
18	18	0.171
19	19	0.186
2	2	0.95
20	20	0.106
21	21	0.0947
22	22	0.214
23	23	0.425
24	24	0.0356
25	25	0.44
26	26	1.23383e-4
27	27	0.919
28	28	0.639
29	29	0.00978
3	3	0.0333
30	30	0.805
31	31	0.963
32	32	0.0565
33	33	0.0418
34	34	0.648
35	35	0.61
36	36	0.137
37	37	0.027
38	38	0.326
39	39	0.204
4	4	0.744
40	40	0.0261
41	41	0.337
42	42	0.18
43	43	0.105
44	44	0.317
45	45	0.686
46	46	0.083
47	47	0.0676
48	48	0.0555
49	49	0.194
5	5	0.534
50	50	0.293
51	51	0.497
52	52	0.586
53	53	0.909
54	54	0.414
55	55	0.613
56	56	0.451
57	57	0.324
58	58	0.307
59	59	0.108
6	6	0.778
60	60	0.0657
61	61	0.0605
62	62	0.197
63	63	0.174
64	64	0.217
65	65	0.268
66	66	0.114
67	67	0.321
68	68	0.177
69	69	0.529
7	7	0.0439
70	70	0.0497
71	71	0.00961
72	72	0.345
73	73	0.0228
74	74	0.85
75	75	0.0287
76	76	0.398
77	77	0.2
78	78	0.00159
79	79	0.482
8	8	0.0756
80	80	0.545
81	81	0.722
82	82	0.604
83	83	0.0384
84	84	0.546
85	85	0.264
86	86	0.167
87	87	1.31517e-4
88	88	0.839
89	89	0.616
9	9	0.378
90	90	0.112
91	91	0.781
92	92	0.604
93	93	0.951
94	94	0.156
95	95	0.0091
96	96	0.974
97	97	0.682
98	98	0.307
99	99	0.66

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12611

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010195 human olfactory region - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0003112 (olfactory region)
0000033 (head)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0011158 (primary subdivision of skull)
0011159 (primary subdivision of cranial skeletal system)
0010317 (germ layer / neural crest derived structure)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0003128 (cranium)
0011137 (axial skeletal system)
0001703 (neurocranium)
0002241 (chondrocranium)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010195 (human olfactory region - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004856
-|accession_numbers=CAGE;DRX008695;DRR009567;DRZ000992;DRZ002377
+|accession_numbers=CAGE;DRX008695;DRR009567;DRZ000992;DRZ002377;DRZ012342;DRZ013727
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0003112,UBERON:0000033,UBERON:0000479,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0011158,UBERON:0011159,UBERON:0010317,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0003128,UBERON:0011137,UBERON:0001703,UBERON:0002241,UBERON:0010323,UBERON:0003129
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.61!402.72!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.33!213.79!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.27!186.02!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.08!119.98!SOX10;;chr9:77112244..77112262,+!p1@RORB!2.02!114.65!RORB;;chr17:53342311..53342400,+!p1@HLF!1.95!100.44!HLF;;chr11:61520075..61520136,+!p1@C11orf9!1.91!164.22!C11orf9;;chr9:114287433..114287513,+!p1@ZNF483!1.89!191.67!ZNF483;;chr17:37764128..37764258,-!p1@NEUROD2!1.89!77.02!NEUROD2;;chr21:34398234..34398250,+!p1@OLIG2!1.89!76.70!OLIG2;;chr14:29235961..29236008,+!p1@FOXG1!1.86!70.89!FOXG1;;chr3:181429704..181429722,+!p1@SOX2!1.85!70.40!SOX2;;chr2:162272785..162272836,+!p1@TBR1!1.77!58.45!TBR1;;chrX:25034067..25034088,-!p1@ARX!1.74!54.26!ARX;;chr2:145277882..145277967,-!p3@ZEB2!1.71!85.58!ZEB2;;chr4:81118647..81118666,+!p1@PRDM8!1.68!60.88!PRDM8;;chr15:80733570..80733659,+!p2@ARNT2!1.68!46.67!ARNT2;;chr2:2334997..2335053,-!p1@MYT1L!1.65!43.60!MYT1L;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.65!43.44!SMARCE1;;chr10:64134120..64134183,+!p1@ZNF365!1.64!50.70!ZNF365;;chr7:31380292..31380351,-!p1@NEUROD6!1.63!41.50!NEUROD6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.61!39.40!POU3F3;;chr4:57547454..57547469,-!p1@HOPX!1.61!39.40!HOPX;;chr5:88178983..88179012,-!p1@MEF2C!1.59!278.71!MEF2C;;chr19:13135582..13135600,+!p3@NFIX!1.59!37.79!NFIX;;chr2:95963052..95963106,+!p1@KCNIP3!1.58!37.30!KCNIP3;;chr8:53322304..53322340,-!p1@ST18!1.58!36.98!ST18;;chr21:34442540..34442560,+!p2@OLIG1!1.57!36.49!OLIG1;;chr1:2461692..2461710,-!p1@HES5!1.55!34.88!HES5;;chr2:166326200..166326216,+!p1@CSRNP3!1.54!48.28!CSRNP3;;chr15:80735246..80735321,+!p3@ARNT2!1.53!32.94!ARNT2;;chr12:26277817..26277863,-!p2@BHLHE41!1.50!41.01!BHLHE41;;chr19:46801639..46801699,+!p1@HIF3A!1.50!30.84!HIF3A;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.36!SOX2;;chr14:29234581..29234601,+!p2@FOXG1!1.49!29.55!FOXG1;;chr10:119302232..119302265,+!p1@EMX2!1.46!27.61!EMX2;;chr18:53070846..53070902,-!p6@TCF4!1.46!27.61!TCF4;;chr11:8102846..8102892,+!p1@TUB!1.44!36.98!TUB;;chr22:41763452..41763466,+!p2@TEF!1.44!26.48!TEF;;chr8:40755333..40755352,-!p1@ZMAT4!1.44!26.32!ZMAT4;;chr15:80696703..80696754,+!p1@ARNT2!1.43!34.39!ARNT2;;chr11:113930425..113930471,+!p1@ZBTB16!1.42!36.17!ZBTB16;;chr14:33403881..33403924,+!p1@NPAS3!1.42!25.51!NPAS3;;chr10:48355030..48355090,+!p1@ZNF488!1.41!31.33!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.40!24.38!NKX6-2;;chr16:1031762..1031781,+!p1@SOX8!1.38!22.93!SOX8;;chr19:57352109..57352153,-!p2@ZIM2!1.37!22.28!ZIM2;;chr12:106976678..106976708,+!p2@RFX4!1.37!22.28!RFX4;;chr12:54779511..54779577,-!p5@ZNF385A!1.36!21.96!ZNF385A;;chr19:13135386..13135435,+!p4@NFIX!1.36!21.80!NFIX;;chr9:126774018..126774055,+!p1@LHX2!1.34!20.67!LHX2;;chr17:7492684..7492778,-!p2@SOX15!1.33!41.98!SOX15;;chr12:106976774..106976788,+!p1@RFX4!1.33!20.51!RFX4;;chrX:85969626..85969664,+!p1@DACH2!1.33!20.51!DACH2;;chr5:88179017..88179046,-!p2@MEF2C!1.32!78.96!MEF2C;;chr8:53322347..53322378,-!p2@ST18!1.30!18.73!ST18;;chr6:19837592..19837621,+!p1@ID4!1.29!111.42!ID4;;chr3:24536253..24536328,-!p1@THRB!1.28!33.43!THRB;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.51!HOPX;;chr12:26277956..26277980,-!p1@BHLHE41!1.27!62.49!BHLHE41;;chr5:92920256..92920282,+!p7@NR2F1!1.27!21.15!NR2F1;;chr2:60781201..60781258,-!p3@BCL11A!1.26!17.28!BCL11A;;chr11:125034640..125034655,+!p1@PKNOX2!1.26!17.12!PKNOX2;;chr17:38219209..38219230,+!p1@THRA!1.25!212.82!THRA;;chr2:95963120..95963136,+!p2@KCNIP3!1.25!16.79!KCNIP3;;chr19:46800289..46800327,+!p2@HIF3A!1.23!15.82!HIF3A;;chr1:214161272..214161322,+!p1@PROX1!1.22!22.12!PROX1;;chr9:77112225..77112238,+!p2@RORB!1.22!15.50!RORB;;chr6:126112039..126112062,+!p8@NCOA7!1.21!18.25!NCOA7;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.21!15.18!POU3F3;;chr19:38720294..38720348,-!p1@DPF1!1.20!18.57!DPF1;;chr6:126070769..126070801,+!p1@HEY2!1.20!17.28!HEY2;;chr14:58798013..58798071,+!p2@ARID4A!1.20!14.69!ARID4A;;chr1:151032860..151032918,+!p1@MLLT11!1.18!164.87!MLLT11;;chr14:29236269..29236285,+!p3@FOXG1!1.18!14.21!FOXG1;;chr2:162272889..162272915,+!p2@TBR1!1.18!14.05!TBR1;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.89!PAX6;;chr13:100634031..100634045,+!p1@ZIC2!1.17!13.89!ZIC2;;chr15:31658288..31658338,+!p4@KLF13!1.16!13.56!KLF13;;chr16:85932760..85932775,+!p1@IRF8!1.16!13.56!IRF8;;chr16:67198633..67198671,+!p1@HSF4!1.15!13.24!HSF4;;chr9:126773880..126773895,+!p2@LHX2!1.15!13.24!LHX2;;chr6:143266185..143266238,-!p2@HIVEP2!1.13!17.12!HIVEP2;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.57!ZNF385A;;chr19:38085768..38085821,+!p1@ZNF540!1.12!18.25!ZNF540;;chr11:31832862..31832884,-!p2@PAX6!1.12!12.11!PAX6;;chr2:60780607..60780624,-!p2@BCL11A!1.11!36.33!BCL11A;;chrX:118739835..118739862,-!p1@NKRF!1.11!13.08!NKRF;;chr6:15401104..15401166,+!p5@JARID2!1.11!11.79!JARID2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.09!11.30!ZBED1;;chr10:38265517..38265591,-!p1@ZNF25!1.08!43.28!ZNF25;;chr8:60031682..60031710,-!p2@TOX!1.08!17.92!TOX;;chr3:126076242..126076257,-!p1@KLF15!1.08!13.73!KLF15;;chr16:51185318..51185348,-!p2@SALL1!1.08!11.14!SALL1;;chr7:150974206..150974255,-!p1@SMARCD3!1.06!66.04!SMARCD3;;chr13:46549911..46549956,-!p3@ZC3H13!1.06!15.18!ZC3H13;;chr3:33482052..33482116,-!p2@UBP1!1.05!15.82!UBP1;;chr14:33408072..33408114,+!p2@NPAS3!1.05!12.27!NPAS3;;chr3:147127142..147127168,+!p1@ZIC1!1.05!10.33!ZIC1;;chr3:24536332..24536358,-!p2@THRB!1.05!10.17!THRB;;chr7:63505799..63505904,+!p1@ZNF727!1.05!10.17!ZNF727;;chr1:244214577..244214593,+!p1@ZNF238!1.05!10.17!ZNF238;;chr1:8585945..8586056,-!p3@RERE!1.04!33.43!RERE;;chr8:30890810..30890880,-!p1@PURG!1.04!9.85!PURG;;chr5:88179230..88179270,-!p4@MEF2C!1.03!19.05!MEF2C;;chr3:141105705..141105770,+!p4@ZBTB38!1.03!11.95!ZBTB38;;chr11:125034605..125034636,+!p2@PKNOX2!1.03!9.69!PKNOX2;;chr3:18466787..18466839,-!p1@SATB1!1.02!42.95!SATB1;;chr1:61548069..61548102,+!p3@NFIA!1.02!23.09!NFIA;;chr19:30863271..30863338,+!p1@ZNF536!1.02!9.53!ZNF536;;chr19:13135566..13135577,+!p9@NFIX!1.02!9.37!NFIX;;chr9:126774058..126774081,+!p3@LHX2!1.02!9.37!LHX2;;chrX:118739782..118739829,-!p2@NKRF!1.02!9.37!NKRF;;chr4:57522598..57522664,-!p3@HOPX!1.02!9.37!HOPX;;chr14:33403648..33403710,+!p3@NPAS3!1.02!9.37!NPAS3;;chr16:79634624..79634642,-!p1@MAF!1.01!36.82!MAF;;chr19:57183114..57183145,-!p1@ZNF835!1.01!10.33!ZNF835;;chr21:34442584..34442587,+!p3@OLIG1!1.01!9.20!OLIG1;;chr8:145560111..145560165,-!p2@SCRT1!1.01!9.20!SCRT1;;chr5:88179195..88179224,-!p3@MEF2C!1.00!14.37!MEF2C;;chr20:62680984..62680999,-!p1@SOX18!1.00!11.95!SOX18;;chr3:147127177..147127194,+!p2@ZIC1!1.00!9.04!ZIC1;;chr17:70117153..70117174,+!p1@SOX9!0.99!92.69!SOX9;;chr20:3388541..3388575,-!p2@C20orf194!0.99!35.04!C20orf194;;chr2:113057415..113057477,+!p3@ZC3H6!0.99!11.63!ZC3H6;;chr2:73520667..73520683,-!p1@EGR4!0.99!8.72!EGR4;;chr19:58545454..58545498,+!p1@ZSCAN1!0.99!8.72!ZSCAN1;;chr16:67197654..67197716,+!p3@HSF4!0.99!8.72!HSF4;;chr11:8102819..8102845,+!p3@TUB!0.98!10.66!TUB;;chr19:53636125..53636178,-!p1@ZNF415!0.97!24.06!ZNF415;;chr5:88119715..88119757,-!p11@MEF2C!0.97!8.40!MEF2C;;chr11:113930401..113930422,+!p3@ZBTB16!0.97!8.40!ZBTB16;;chr12:24102576..24102623,-!p2@SOX5!0.97!8.40!SOX5;;chr2:200323414..200323455,-!p1@SATB2!0.96!17.76!SATB2;;chr5:139487608..139487663,+!p3@PURA!0.96!17.60!PURA;;chr1:151032922..151032951,+!p2@MLLT11!0.96!13.89!MLLT11;;chr5:92919375..92919438,+!p6@NR2F1!0.96!8.72!NR2F1;;chr16:67198683..67198698,+!p2@HSF4!0.96!8.07!HSF4;;chr17:17726907..17726958,-!p2@SREBF1!0.95!51.19!SREBF1;;chr15:61521417..61521460,-!p2@RORA!0.95!18.09!RORA;;chr11:113930291..113930339,+!p2@ZBTB16!0.95!13.08!ZBTB16;;chr7:73038839..73038862,-!p1@MLXIPL!0.94!7.75!MLXIPL;;chr8:22550530..22550609,-!p2@EGR3!0.94!7.75!EGR3;;chr8:93074803..93074845,-!p1@RUNX1T1!0.94!7.75!RUNX1T1;;chr2:2328299..2328363,-!p3@MYT1L!0.94!7.75!MYT1L;;chr8:80679993..80680011,-!p1@HEY1!0.93!11.14!HEY1;;chr12:26277929..26277955,-!p3@BHLHE41!0.93!10.98!BHLHE41;;chr13:95364784..95364806,-!p1@SOX21!0.93!7.59!SOX21;;chr7:39125511..39125560,+!p1@POU6F2!0.93!7.59!POU6F2;;chr1:40105299..40105326,-!p1@HEYL!0.93!7.59!HEYL;;chr2:180726291..180726311,-!p1@ZNF385B!0.93!7.59!ZNF385B;;chr3:141105235..141105307,+!p7@ZBTB38!0.93!7.43!ZBTB38;;chr4:26344778..26344807,+!p8@RBPJ!0.93!7.43!RBPJ;;chr6:108487289..108487302,+!p1@NR2E1!0.93!7.43!NR2E1;;chr15:80696666..80696700,+!p4@ARNT2!0.93!7.43!ARNT2;;chr16:51185172..51185197,-!p1@SALL1!0.93!7.43!SALL1;;chr19:13134772..13134822,+!p2@NFIX!0.92!10.98!NFIX;;chr2:192015750..192015793,-!p2@STAT4!0.92!10.01!STAT4;;chr12:24715376..24715432,-!p1@SOX5!0.92!9.37!SOX5;;chr18:53068911..53068935,-!p4@TCF4!0.92!8.24!TCF4;;chr19:13135731..13135787,+!p10@NFIX!0.92!7.27!NFIX;;chr17:38256822..38256851,-!p1@NR1D1!0.91!58.94!NR1D1;;chr9:3525867..3525902,-!p3@RFX3!0.91!25.35!RFX3;;chrX:101186981..101187030,-!p1@ZMAT1!0.91!24.38!ZMAT1;;chr16:79634595..79634620,-!p2@MAF!0.91!13.24!MAF;;chr7:64023410..64023428,-!p2@ZNF680!0.91!11.63!ZNF680;;chr1:244219775..244219893,+!p2@ZNF238!0.91!10.01!ZNF238;;chr12:103352277..103352324,+!p2@ASCL1!0.91!7.10!ASCL1;;chr2:166428839..166428859,+!p2@CSRNP3!0.91!7.10!CSRNP3;;chr3:147111198..147111225,+!p4@ZIC1!0.91!7.10!ZIC1;;chr8:145560371..145560449,-!p1@SCRT1!0.91!7.10!SCRT1;;chr22:41777927..41777971,+!p1@TEF!0.90!61.20!TEF;;chr5:92918919..92918942,+!p1@NR2F1!0.90!32.30!NR2F1;;chr17:38219143..38219154,+!p2@THRA!0.90!25.67!THRA;;chr8:60031619..60031676,-!p1@TOX!0.90!15.66!TOX;;chr11:47400078..47400106,-!p1@SPI1!0.90!6.94!SPI1;;chr11:8040739..8040815,+!p4@TUB!0.90!6.94!TUB;;chr19:7580549..7580596,+!p3@ZNF358!0.90!6.94!ZNF358;;chr2:100721328..100721348,-!p4@AFF3!0.90!6.94!AFF3;;chr2:145275982..145276003,-!p7@ZEB2!0.90!6.94!ZEB2;;chr2:2335070..2335098,-!p4@MYT1L!0.90!6.94!MYT1L;;chr7:28725740..28725778,+!p1@CREB5!0.89!62.81!CREB5;;chrX:106959661..106959763,-!p4@TSC22D3!0.89!20.83!TSC22D3;;chr17:38219184..38219195,+!p3@THRA!0.89!13.89!THRA;;chr5:92920456..92920488,+!p9@NR2F1!0.89!7.91!NR2F1;;c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P;;chr19:49139477..49139552,-!p4@DBP!0.41!2.26!DBP;;chr6:157098993..157099006,+!p12@ARID1B!0.41!1.94!ARID1B;;chr2:8822176..8822196,+!p1@ID2!0.40!319.72!ID2;;chr17:46125707..46125746,+!p2@NFE2L1!0.40!121.59!NFE2L1;;chr19:19932513..19932569,-!p1@ZNF506!0.40!42.79!ZNF506;;chr10:124768300..124768334,-!p1@IKZF5!0.40!27.61!IKZF5;;chr20:61493117..61493187,-!p1@TCFL5!0.40!25.84!TCFL5;;chr19:37064145..37064216,-!p1@ZNF529!0.40!18.89!ZNF529;;chr19:52408257..52408278,-!p1@ZNF649!0.40!14.21!ZNF649;;chr19:22018966..22019001,-!p1@ZNF43!0.40!12.60!ZNF43;;chr1:156470515..156470542,-!p2@MEF2D!0.40!11.46!MEF2D;;chrX:47696275..47696335,+!p1@ZNF81!0.40!7.59!ZNF81;;chr5:139493727..139493766,+!p4@PURA!0.40!5.97!PURA;;chr6:41040923..41040952,+!p2@NFYA!0.40!5.33!NFYA;;chr19:36980455..36980469,-!p2@ZNF566!0.40!4.20!ZNF566;;chr14:89628064..89628109,-!p4@FOXN3!0.40!4.04!FOXN3;;chr19:19976714..19976729,+!p3@ZNF253!0.40!3.55!ZNF253;;chr12:72058102..72058127,+!p7@THAP2!0.40!3.39!THAP2;;chr6:157099159..157099185,+!p6@ARID1B!0.40!3.23!ARID1B;;chr11:47270477..47270494,+!p4@NR1H3!0.40!2.58!NR1H3;;chr19:57078386..57078407,+!p3@ZNF470!0.40!2.26!ZNF470;;chrX:70585978..70586012,+!p3@TAF1!0.40!2.10!TAF1;;chr7:14028743..14028799,-!p3@ETV1!0.40!2.10!ETV1;;chr12:51611660..51611692,-!p5@POU6F1!0.40!1.78!POU6F1;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.39!77.83!ZKSCAN1;;chr2:101436564..101436647,+!p1@NPAS2!0.39!44.89!NPAS2;;chr20:39946279..39946356,-!p1@ZHX3!0.39!33.75!ZHX3;;chr19:57791806..57791875,+!p1@ZNF460!0.39!26.80!ZNF460;;chr19:35168567..35168620,+!p1@ZNF302!0.39!25.19!ZNF302;;chr2:238536207..238536290,+!p2@LRRFIP1!0.39!21.31!LRRFIP1;;chr19:37825540..37825588,+!p2@HKR1!0.39!15.02!HKR1;;chr1:249153268..249153298,-!p1@ZNF692!0.39!11.30!ZNF692;;chr1:14075865..14075896,+!p3@PRDM2!0.39!8.88!PRDM2;;chr17:5095126..5095169,-!p1@ZNF594!0.39!8.72!ZNF594;;chr19:20959098..20959117,+!p1@ZNF66P!0.39!8.56!ZNF66P;;chr16:71918033..71918101,-!p1@ZNF821!0.39!7.59!ZNF821;;chr17:41322281..41322328,-!p2@BRCA1!0.39!5.81!BRCA1;;chr17:1959369..1959388,+!p2@HIC1!0.39!5.17!HIC1;;chr7:55955139..55955190,+!p1@ZNF713,p2@MRPS17!0.39!5.17!ZNF713;;chr19:8578683..8578750,-!p2@ZNF414!0.39!4.04!ZNF414;;chr2:37458749..37458766,-!p2@CEBPZ!0.39!4.04!CEBPZ;;chr10:98592674..98592724,+!p2@LCOR!0.39!3.71!LCOR;;chr19:44669280..44669294,+!p4@ZNF226,p4@ZNF234!0.39!2.75!ZNF226;;chr19:57999082..57999095,+!p2@ZNF419!0.39!2.58!ZNF419;;chr9:127533582..127533615,-!p1@NR6A1!0.39!2.58!NR6A1;;chr15:56535722..56535764,-!p3@RFX7!0.39!2.42!RFX7;;chr16:73093174..73093209,-!p3@ZFHX3!0.39!2.26!ZFHX3;;chr9:2017159..2017186,+!p12@SMARCA2!0.39!2.26!SMARCA2;;chr19:56988864..56988924,-!p2@ZNF667!0.39!2.10!ZNF667;;chr1:91487352..91487376,-!p9@ZNF644!0.39!2.10!ZNF644;;chr11:130184828..130184839,-!p7@ZBTB44!0.39!1.94!ZBTB44;;chr5:124082279..124082319,-!p3@ZNF608!0.39!1.94!ZNF608;;chr19:36980474..36980485,-!p4@ZNF566!0.39!1.94!ZNF566;;chr15:57211318..57211355,+!p10@TCF12!0.39!1.45!TCF12;;chr15:77197723..77197734,-!p4@SCAPER!0.39!1.45!SCAPER;;chr15:80696248..80696259,+!p15@ARNT2!0.39!1.45!ARNT2;;chr15:80696305..80696320,+!p10@ARNT2!0.39!1.45!ARNT2;;chr15:80735233..80735240,+!p14@ARNT2!0.39!1.45!ARNT2;;chr15:90294062..90294079,-!p2@MESP1!0.39!1.45!MESP1;;chr16:79634581..79634592,-!p4@MAF!0.39!1.45!MAF;;chr17:53342451..53342471,+!p4@HLF!0.39!1.45!HLF;;chr17:7492504..7492520,-!p3@SOX15!0.39!1.45!SOX15;;chr19:12624655..12624680,-!p4@ZNF709!0.39!1.45!ZNF709;;chr19:30863157..30863171,+!p2@ZNF536!0.39!1.45!ZNF536;;chr19:31840278..31840300,-!p5@TSHZ3!0.39!1.45!TSHZ3;;chr10:111985777..111985788,+!p4@MXI1!0.39!1.45!MXI1;;chr10:119301928..119301955,+!p7@EMX2!0.39!1.45!EMX2;;chr11:111320724..111320741,-!p2@POU2AF1!0.39!1.45!POU2AF1;;chr11:8040818..8040840,+!p5@TUB!0.39!1.45!TUB;;chr12:104531768..104531782,-!p7@NFYB!0.39!1.45!NFYB;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/olfactory%2520region%252c%2520adult.CNhs12611.10195-103E6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10195-103E6
 |is_a=EFO:0002091;;FF:0010195
 |is_obsolete=
 |library_id=CNhs12611
-|library_id_phase_based=1:CNhs12611
+|library_id_phase_based=2:CNhs12611
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10195
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10195
 |name=olfactory region, adult
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12611,LSID952,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 65: / Line 76: @@
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 |sample_age=87
@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10195-103E6;search_select_hide=table117:FF:10195-103E6
 }}

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FF:10195-103E6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0