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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005647
|accession_numbers=CAGE;DRX008021;DRR008893;DRZ000318;DRZ001703
|accession_numbers=CAGE;DRX008021;DRR008893;DRZ000318;DRZ001703;DRZ011668;DRZ013053
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg38.nobarcode.ctss.bed.gz
|id=FF:10807-111A6
|id=FF:10807-111A6
|is_a=EFO:0002091;;FF:0000210;;FF:0100306;;FF:0101591
|is_a=EFO:0002091;;FF:0000210;;FF:0100306;;FF:0101591
Line 46: Line 51:
|library_id=CNhs11890
|library_id=CNhs11890
|library_id_phase_based=2:CNhs11890
|library_id_phase_based=2:CNhs11890
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10807
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10807
|name=teratocarcinoma cell line:PA-1
|name=teratocarcinoma cell line:PA-1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11890,LSID830,release010,COMPLETED"
|profile_hcage=CNhs11890,LSID830,release010,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=",,,"
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
|top_motifs=OCT4_SOX2{dimer}:2.69910673111;GFI1:1.88333612329;PBX1:1.87246816369;TFDP1:1.77369579521;NFY{A,B,C}:1.55037134511;VSX1,2:1.47358043316;POU2F1..3:1.44558522268;RBPJ:1.37512855791;SOX{8,9,10}:1.35009472958;ONECUT1,2:1.27596273379;E2F1..5:1.22884197522;TOPORS:1.19400558586;CDX1,2,4:1.15889205593;T:1.13893432649;ALX1:1.10196035272;ZNF143:1.0672418448;PITX1..3:1.02502158297;SOX17:1.0094150044;FOX{I1,J2}:0.999907858953;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.962383315256;PAX8:0.93615416275;AIRE:0.865346109135;PAX4:0.864482170022;POU1F1:0.832577266037;FOXP1:0.830887492426;HOX{A6,A7,B6,B7}:0.830552190848;ZBTB16:0.791710329087;NKX2-3_NKX2-5:0.778869339685;MYB:0.776431642505;CUX2:0.773401635857;SP1:0.754358691194;HOX{A4,D4}:0.749135803959;EVI1:0.722572693234;BREu{core}:0.722056118826;FOXQ1:0.718207361387;KLF4:0.706334253331;NRF1:0.703651561997;NANOG:0.693616652579;POU5F1:0.686160982503;HOX{A5,B5}:0.631054887987;IKZF2:0.622697786468;CDC5L:0.598057636274;SOX2:0.561670109718;STAT5{A,B}:0.56155265963;MZF1:0.559855400737;YY1:0.555297653863;LEF1_TCF7_TCF7L1,2:0.511007618179;TEF:0.509004008494;ZNF384:0.480119216378;RORA:0.467238044043;POU3F1..4:0.44680429269;FOXD3:0.44377126008;CRX:0.438836159266;ELK1,4_GABP{A,B1}:0.433242562603;NKX2-1,4:0.373243898928;FOXM1:0.367094539872;PAX1,9:0.328039706362;FOXA2:0.321487343456;GATA4:0.312107578917;MYBL2:0.310467619011;ZFP161:0.307723101244;NKX6-1,2:0.279588355893;GATA6:0.276947792903;XCPE1{core}:0.270352282372;ATF4:0.257164329052;IKZF1:0.255840128895;ADNP_IRX_SIX_ZHX:0.242948428729;CREB1:0.201186816083;UFEwm:0.173744089131;FOXP3:0.152176538436;PATZ1:0.148049308742;HNF4A_NR2F1,2:0.125209067856;HIC1:0.122088087088;TEAD1:0.108470675422;MYOD1:0.0679217666924;HMGA1,2:0.0589023743784;ARID5B:0.0529352792964;SNAI1..3:0.0332050865845;FOXL1:0.0231346372752;TFAP2B:0.0220950667379;ESRRA:0.019455807515;GFI1B:0.0129060260906;PAX3,7:0.0072697902147;LHX3,4:0.00155502611338;RFX1:-0.00387166652716;EN1,2:-0.0302335784679;TP53:-0.03223832428;GTF2I:-0.0395842155219;NR3C1:-0.0529513842336;NKX3-1:-0.0590794952637;PRRX1,2:-0.0592853114557;GCM1,2:-0.0627327164005;ZBTB6:-0.066465267121;MYFfamily:-0.06896611875;MED-1{core}:-0.0789993790452;NFIX:-0.0988868510862;HAND1,2:-0.111953916118;MAZ:-0.112409121595;LMO2:-0.11459767309;NANOG{mouse}:-0.124139022416;MTF1:-0.124880183403;MEF2{A,B,C,D}:-0.163560270499;FOXO1,3,4:-0.171010504828;REST:-0.176912436137;bHLH_family:-0.179501277918;ZNF148:-0.185246741212;HNF1A:-0.190995517432;ZIC1..3:-0.192767436645;NR1H4:-0.207917806615;MTE{core}:-0.214766265432;NKX3-2:-0.215253553899;HOXA9_MEIS1:-0.220241935829;EBF1:-0.252521496301;ATF2:-0.261579417795;DBP:-0.263646615834;SOX5:-0.277344797822;BACH2:-0.279219077371;STAT1,3:-0.281395251787;GTF2A1,2:-0.285867654488;NKX2-2,8:-0.293794366454;TBP:-0.30352076483;FOX{F1,F2,J1}:-0.30396090036;POU6F1:-0.306108584235;EGR1..3:-0.32714053351;HSF1,2:-0.331175400451;PPARG:-0.343593796667;TFAP2{A,C}:-0.370370052219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.381159229764;ZEB1:-0.386948769184;RXR{A,B,G}:-0.390388701319;SREBF1,2:-0.395937306891;HBP1_HMGB_SSRP1_UBTF:-0.401332895646;NFKB1_REL_RELA:-0.408453405769;PDX1:-0.412746078737;FOS_FOS{B,L1}_JUN{B,D}:-0.413220900128;ALX4:-0.417570645829;AHR_ARNT_ARNT2:-0.418723668091;NFE2:-0.427522585436;PRDM1:-0.428805887921;PAX5:-0.429225029529;AR:-0.429945904975;HLF:-0.436599091263;XBP1:-0.438162527392;NFE2L2:-0.451775318197;TFAP4:-0.459061124592;TBX4,5:-0.475723656169;FOXN1:-0.480525501342;SPI1:-0.488654359245;SPIB:-0.521989250288;HIF1A:-0.540945941736;RREB1:-0.555195626673;ELF1,2,4:-0.564957081557;ATF5_CREB3:-0.572486230154;FOSL2:-0.580106952513;SRF:-0.603071977242;TFCP2:-0.624719275027;JUN:-0.62786554718;PAX2:-0.628973877083;RUNX1..3:-0.642515283581;NFE2L1:-0.645833322174;PAX6:-0.649473130877;TGIF1:-0.655296800996;DMAP1_NCOR{1,2}_SMARC:-0.673369658295;RFX2..5_RFXANK_RFXAP:-0.675598789978;NFIL3:-0.686498929605;IRF7:-0.705798185455;GZF1:-0.706828115013;NHLH1,2:-0.715162298952;NR5A1,2:-0.723901660396;CEBPA,B_DDIT3:-0.74312860756;HES1:-0.835362774203;SPZ1:-0.858579749579;ETS1,2:-0.868911314582;BPTF:-0.888949096916;TLX1..3_NFIC{dimer}:-0.910333760046;NFATC1..3:-0.923874206107;FOX{D1,D2}:-0.93035411242;ZNF238:-1.01491809023;TAL1_TCF{3,4,12}:-1.03037511065;STAT2,4,6:-1.05250915503;IRF1,2:-1.14044226767;SMAD1..7,9:-1.14254597918;HMX1:-1.14351652329;ESR1:-1.16185028856;EP300:-1.17573983264;RXRA_VDR{dimer}:-1.25961834563;MAFB:-1.28636147291;TLX2:-1.32622997843;NR6A1:-1.36378560083;ATF6:-1.4668839134;ZNF423:-1.50128844219;GLI1..3:-1.7736787806
|top_motifs=OCT4_SOX2{dimer}:2.69910673111;GFI1:1.88333612329;PBX1:1.87246816369;TFDP1:1.77369579521;NFY{A,B,C}:1.55037134511;VSX1,2:1.47358043316;POU2F1..3:1.44558522268;RBPJ:1.37512855791;SOX{8,9,10}:1.35009472958;ONECUT1,2:1.27596273379;E2F1..5:1.22884197522;TOPORS:1.19400558586;CDX1,2,4:1.15889205593;T:1.13893432649;ALX1:1.10196035272;ZNF143:1.0672418448;PITX1..3:1.02502158297;SOX17:1.0094150044;FOX{I1,J2}:0.999907858953;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.962383315256;PAX8:0.93615416275;AIRE:0.865346109135;PAX4:0.864482170022;POU1F1:0.832577266037;FOXP1:0.830887492426;HOX{A6,A7,B6,B7}:0.830552190848;ZBTB16:0.791710329087;NKX2-3_NKX2-5:0.778869339685;MYB:0.776431642505;CUX2:0.773401635857;SP1:0.754358691194;HOX{A4,D4}:0.749135803959;EVI1:0.722572693234;BREu{core}:0.722056118826;FOXQ1:0.718207361387;KLF4:0.706334253331;NRF1:0.703651561997;NANOG:0.693616652579;POU5F1:0.686160982503;HOX{A5,B5}:0.631054887987;IKZF2:0.622697786468;CDC5L:0.598057636274;SOX2:0.561670109718;STAT5{A,B}:0.56155265963;MZF1:0.559855400737;YY1:0.555297653863;LEF1_TCF7_TCF7L1,2:0.511007618179;TEF:0.509004008494;ZNF384:0.480119216378;RORA:0.467238044043;POU3F1..4:0.44680429269;FOXD3:0.44377126008;CRX:0.438836159266;ELK1,4_GABP{A,B1}:0.433242562603;NKX2-1,4:0.373243898928;FOXM1:0.367094539872;PAX1,9:0.328039706362;FOXA2:0.321487343456;GATA4:0.312107578917;MYBL2:0.310467619011;ZFP161:0.307723101244;NKX6-1,2:0.279588355893;GATA6:0.276947792903;XCPE1{core}:0.270352282372;ATF4:0.257164329052;IKZF1:0.255840128895;ADNP_IRX_SIX_ZHX:0.242948428729;CREB1:0.201186816083;UFEwm:0.173744089131;FOXP3:0.152176538436;PATZ1:0.148049308742;HNF4A_NR2F1,2:0.125209067856;HIC1:0.122088087088;TEAD1:0.108470675422;MYOD1:0.0679217666924;HMGA1,2:0.0589023743784;ARID5B:0.0529352792964;SNAI1..3:0.0332050865845;FOXL1:0.0231346372752;TFAP2B:0.0220950667379;ESRRA:0.019455807515;GFI1B:0.0129060260906;PAX3,7:0.0072697902147;LHX3,4:0.00155502611338;RFX1:-0.00387166652716;EN1,2:-0.0302335784679;TP53:-0.03223832428;GTF2I:-0.0395842155219;NR3C1:-0.0529513842336;NKX3-1:-0.0590794952637;PRRX1,2:-0.0592853114557;GCM1,2:-0.0627327164005;ZBTB6:-0.066465267121;MYFfamily:-0.06896611875;MED-1{core}:-0.0789993790452;NFIX:-0.0988868510862;HAND1,2:-0.111953916118;MAZ:-0.112409121595;LMO2:-0.11459767309;NANOG{mouse}:-0.124139022416;MTF1:-0.124880183403;MEF2{A,B,C,D}:-0.163560270499;FOXO1,3,4:-0.171010504828;REST:-0.176912436137;bHLH_family:-0.179501277918;ZNF148:-0.185246741212;HNF1A:-0.190995517432;ZIC1..3:-0.192767436645;NR1H4:-0.207917806615;MTE{core}:-0.214766265432;NKX3-2:-0.215253553899;HOXA9_MEIS1:-0.220241935829;EBF1:-0.252521496301;ATF2:-0.261579417795;DBP:-0.263646615834;SOX5:-0.277344797822;BACH2:-0.279219077371;STAT1,3:-0.281395251787;GTF2A1,2:-0.285867654488;NKX2-2,8:-0.293794366454;TBP:-0.30352076483;FOX{F1,F2,J1}:-0.30396090036;POU6F1:-0.306108584235;EGR1..3:-0.32714053351;HSF1,2:-0.331175400451;PPARG:-0.343593796667;TFAP2{A,C}:-0.370370052219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.381159229764;ZEB1:-0.386948769184;RXR{A,B,G}:-0.390388701319;SREBF1,2:-0.395937306891;HBP1_HMGB_SSRP1_UBTF:-0.401332895646;NFKB1_REL_RELA:-0.408453405769;PDX1:-0.412746078737;FOS_FOS{B,L1}_JUN{B,D}:-0.413220900128;ALX4:-0.417570645829;AHR_ARNT_ARNT2:-0.418723668091;NFE2:-0.427522585436;PRDM1:-0.428805887921;PAX5:-0.429225029529;AR:-0.429945904975;HLF:-0.436599091263;XBP1:-0.438162527392;NFE2L2:-0.451775318197;TFAP4:-0.459061124592;TBX4,5:-0.475723656169;FOXN1:-0.480525501342;SPI1:-0.488654359245;SPIB:-0.521989250288;HIF1A:-0.540945941736;RREB1:-0.555195626673;ELF1,2,4:-0.564957081557;ATF5_CREB3:-0.572486230154;FOSL2:-0.580106952513;SRF:-0.603071977242;TFCP2:-0.624719275027;JUN:-0.62786554718;PAX2:-0.628973877083;RUNX1..3:-0.642515283581;NFE2L1:-0.645833322174;PAX6:-0.649473130877;TGIF1:-0.655296800996;DMAP1_NCOR{1,2}_SMARC:-0.673369658295;RFX2..5_RFXANK_RFXAP:-0.675598789978;NFIL3:-0.686498929605;IRF7:-0.705798185455;GZF1:-0.706828115013;NHLH1,2:-0.715162298952;NR5A1,2:-0.723901660396;CEBPA,B_DDIT3:-0.74312860756;HES1:-0.835362774203;SPZ1:-0.858579749579;ETS1,2:-0.868911314582;BPTF:-0.888949096916;TLX1..3_NFIC{dimer}:-0.910333760046;NFATC1..3:-0.923874206107;FOX{D1,D2}:-0.93035411242;ZNF238:-1.01491809023;TAL1_TCF{3,4,12}:-1.03037511065;STAT2,4,6:-1.05250915503;IRF1,2:-1.14044226767;SMAD1..7,9:-1.14254597918;HMX1:-1.14351652329;ESR1:-1.16185028856;EP300:-1.17573983264;RXRA_VDR{dimer}:-1.25961834563;MAFB:-1.28636147291;TLX2:-1.32622997843;NR6A1:-1.36378560083;ATF6:-1.4668839134;ZNF423:-1.50128844219;GLI1..3:-1.7736787806
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10807-111A6;search_select_hide=table117:FF:10807-111A6
}}
}}

Latest revision as of 15:06, 3 June 2020

Name:teratocarcinoma cell line:PA-1
Species:Human (Homo sapiens)
Library ID:CNhs11890
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexfemale
age12
cell typeunclassifiable
cell linePA-1
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005647
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11890 CAGE DRX008021 DRR008893
Accession ID Hg19

Library idBAMCTSS
CNhs11890 DRZ000318 DRZ001703
Accession ID Hg38

Library idBAMCTSS
CNhs11890 DRZ011668 DRZ013053
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.16
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.567
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0.0516
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0414
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.031
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.187
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.188
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0235
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0.0977
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.402
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00769
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.507
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.158
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.177
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0.0977
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11890

Jaspar motifP-value
MA0002.20.00226
MA0003.10.12
MA0004.10.99
MA0006.10.592
MA0007.10.319
MA0009.10.948
MA0014.10.659
MA0017.10.291
MA0018.20.426
MA0019.10.478
MA0024.12.24369e-7
MA0025.10.975
MA0027.10.637
MA0028.10.104
MA0029.10.506
MA0030.10.076
MA0031.10.177
MA0035.20.348
MA0038.13.1162e-5
MA0039.20.162
MA0040.10.165
MA0041.10.0794
MA0042.10.215
MA0043.10.628
MA0046.10.0953
MA0047.20.11
MA0048.10.0842
MA0050.12.13725e-11
MA0051.11.23834e-8
MA0052.10.00307
MA0055.10.116
MA0057.10.254
MA0058.10.616
MA0059.10.837
MA0060.17.61703e-20
MA0061.19.91376e-4
MA0062.20.954
MA0065.20.769
MA0066.10.427
MA0067.10.151
MA0068.10.00442
MA0069.10.29
MA0070.10.0463
MA0071.10.629
MA0072.10.182
MA0073.10.433
MA0074.10.181
MA0076.10.128
MA0077.10.0245
MA0078.10.427
MA0079.20.175
MA0080.21.15891e-13
MA0081.10.0514
MA0083.10.034
MA0084.10.335
MA0087.10.459
MA0088.10.422
MA0090.10.775
MA0091.10.0528
MA0092.10.266
MA0093.10.927
MA0099.21.16523e-13
MA0100.10.291
MA0101.10.0527
MA0102.22.99949e-5
MA0103.10.426
MA0104.20.918
MA0105.13.97198e-4
MA0106.10.869
MA0107.10.00231
MA0108.20.621
MA0111.10.873
MA0112.22.1683e-5
MA0113.10.11
MA0114.10.954
MA0115.10.14
MA0116.10.00812
MA0117.10.833
MA0119.10.0619
MA0122.10.727
MA0124.10.331
MA0125.10.299
MA0131.10.317
MA0135.10.143
MA0136.12.16169e-12
MA0137.20.0395
MA0138.20.345
MA0139.10.952
MA0140.10.369
MA0141.10.371
MA0142.16.30811e-14
MA0143.16.05812e-6
MA0144.10.0074
MA0145.10.354
MA0146.10.55
MA0147.10.847
MA0148.10.114
MA0149.10.779
MA0150.10.00125
MA0152.10.415
MA0153.10.0191
MA0154.10.00384
MA0155.10.575
MA0156.19.05102e-8
MA0157.10.252
MA0159.10.0319
MA0160.10.295
MA0162.10.348
MA0163.10.00113
MA0164.10.67
MA0258.10.0226
MA0259.10.436



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11890

Novel motifP-value
10.397
100.288
1000.644
1010.752
1020.671
1030.162
1040.56
1050.256
1060.0209
1070.752
1080.893
1090.166
110.269
1100.496
1110.827
1120.00405
1130.0748
1140.0693
1150.874
1160.863
1170.306
1180.851
1190.402
120.625
1200.632
1210.502
1220.427
1230.542
1240.735
1250.337
1260.675
1270.156
1280.324
1290.325
130.69
1300.151
1310.604
1320.945
1330.0776
1340.475
1350.0255
1360.0294
1370.126
1380.404
1390.04
140.738
1400.846
1410.696
1420.731
1430.184
1440.814
1450.748
1460.489
1470.288
1480.0128
1490.0226
150.303
1500.824
1510.11
1520.255
1530.254
1540.927
1550.913
1560.851
1570.826
1580.149
1590.396
160.292
1600.118
1610.42
1620.382
1630.464
1640.108
1650.297
1660.569
1670.884
1680.466
1690.0464
170.234
180.21
190.259
20.203
200.631
210.915
220.118
230.0206
240.573
250.355
260.975
270.0461
280.704
290.536
30.288
300.579
310.506
320.00963
330.86
340.33
350.431
360.128
370.154
380.296
390.515
40.33
400.302
410.245
420.86
430.157
440.999
450.359
460.185
470.896
480.67
490.293
50.403
500.878
510.634
520.455
530.787
540.552
550.0604
560.491
570.693
580.123
590.106
60.534
600.112
610.903
620.0658
630.212
640.586
650.0647
660.00561
670.306
680.389
690.709
70.837
700.0344
710.0535
720.325
730.098
740.633
750.519
760.576
770.0886
780.771
790.173
80.452
800.158
810.56
820.0143
830.916
840.785
850.0337
860.66
870.227
880.452
890.0242
90.0524
900.534
910.153
920.0158
930.879
940.156
950.445
960.178
970.826
980.647
990.909



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11890


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100977 (ovary cell line sample)
0100306 (teratocarcinoma cell line sample)
0100811 (ovary cancer cell line sample)
0101591 (PA-1 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

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