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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005674
|DRA_sample_Accession=CAGE@SAMD00005674
|accession_numbers=CAGE;DRX008484;DRR009356;DRZ000781;DRZ002166
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005674
|accession_numbers=CAGE;DRX008484;DRR009356;DRZ000781;DRZ002166;DRZ012131;DRZ013516
|accession_numbers_RNASeq=sRNA-Seq;DRX037181;DRR041547;DRZ007189
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001135,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0001555,UBERON:0000059,UBERON:0002204,UBERON:0005409,UBERON:0000383
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001135,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0001555,UBERON:0000059,UBERON:0002204,UBERON:0005409,UBERON:0000383
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002504,CL:1000279,CL:1000280
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002504,CL:1000279,CL:1000280
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|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.41!256.42!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.79!74.67!FOXF1;;chr4:174451370..174451387,-!p1@HAND2!1.75!54.63!HAND2;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.61!ZFP106;;chr5:134369879..134369898,-!p2@PITX1!1.48!29.10!PITX1;;chr7:27224842..27224872,-!p1@HOXA11!1.38!23.06!HOXA11;;chr5:92918919..92918942,+!p1@NR2F1!1.33!88.95!NR2F1;;chr11:46299199..46299233,+!p1@CREB3L1!1.29!94.44!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.25!25.53!PITX1;;chr17:46682321..46682362,-!p1@HOXB6!1.25!16.75!HOXB6;;chr7:19157248..19157268,-!p1@TWIST1!1.24!45.02!TWIST1;;chr7:27224795..27224840,-!p2@HOXA11!1.23!15.92!HOXA11;;chr15:57511609..57511651,+!p2@TCF12!1.21!25.53!TCF12;;chr7:27192185..27192209,-!p1@HOXA3!1.21!15.37!HOXA3;;chr4:174450089..174450153,-!p2@HAND2!1.20!14.82!HAND2;;chr10:101292684..101292706,+!p1@NKX2-3!1.18!14.28!NKX2-3;;chr2:185463247..185463263,+!p1@ZNF804A!1.12!21.69!ZNF804A;;chr19:46801639..46801699,+!p1@HIF3A!1.11!11.81!HIF3A;;chr11:46299539..46299620,+!p2@CREB3L1!1.10!19.77!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!1.07!10.71!HOXA9;;chr2:176969228..176969260,+!p1@HOXD11!1.06!10.43!HOXD11;;chr4:174451350..174451363,-!p3@HAND2!0.97!8.24!HAND2;;chr15:37392724..37392757,-!p1@MEIS2!0.96!38.44!MEIS2;;chr7:27213893..27213954,-!p1@HOXA10!0.92!7.41!HOXA10;;chr14:62162285..62162296,+!p3@HIF1A!0.91!38.71!HIF1A;;chr2:66662281..66662308,+!p1@MEIS1!0.91!25.81!MEIS1;;chr14:62162258..62162269,+!p2@HIF1A!0.90!70.28!HIF1A;;chr11:61520075..61520136,+!p1@C11orf9!0.90!15.37!C11orf9;;chr1:221052776..221052799,+!p1@HLX!0.89!12.63!HLX;;chr18:19749386..19749404,+!p2@GATA6!0.88!9.61!GATA6;;chr5:92919375..92919438,+!p6@NR2F1!0.88!7.14!NR2F1;;chr17:46667594..46667619,-!p1@HOXB3!0.88!6.59!HOXB3;;chr7:42276787..42276815,-!p1@GLI3!0.87!18.12!GLI3;;chr19:45260775..45260838,+!p5@BCL3!0.87!8.51!BCL3;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.00!SNAI2;;chr5:92918956..92918969,+!p4@NR2F1!0.86!6.86!NR2F1;;chr7:27205106..27205134,-!p2@HOXA9!0.85!6.04!HOXA9;;chr17:1959369..1959388,+!p2@HIC1!0.84!16.47!HIC1;;chr2:66662249..66662267,+!p2@MEIS1!0.83!23.61!MEIS1;;chr2:239756671..239756732,+!p1@TWIST2!0.83!19.77!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.83!16.47!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.83!15.92!ZFPM2;;chr9:16870659..16870675,-!p2@BNC2!0.83!7.14!BNC2;;chr1:164528616..164528660,+!p5@PBX1!0.82!12.08!PBX1;;chr12:66218598..66218645,+!p2@HMGA2!0.81!26.90!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.81!15.92!OSR1;;chr15:83953397..83953425,-!p1@BNC1!0.81!6.31!BNC1;;chr12:24715376..24715432,-!p1@SOX5!0.80!6.86!SOX5;;chr18:19749541..19749557,+!p1@GATA6!0.79!17.57!GATA6;;chr17:59477233..59477263,+!p1@TBX2!0.79!17.02!TBX2;;chr15:37392576..37392589,-!p12@MEIS2!0.79!6.31!MEIS2;;chr1:164528410..164528428,+!p1@PBX1!0.78!41.18!PBX1;;chr5:92919100..92919135,+!p3@NR2F1!0.78!6.31!NR2F1;;chr1:164528445..164528459,+!p2@PBX1!0.76!16.20!PBX1;;chr15:37392616..37392638,-!p2@MEIS2!0.76!15.92!MEIS2;;chr17:46675558..46675577,-!p2@HOXB6!0.75!4.67!HOXB6;;chr11:32457075..32457095,-!p1@WT1!0.75!4.67!WT1;;chr11:46299443..46299459,+!p4@CREB3L1!0.75!4.67!CREB3L1;;chr8:49833978..49833996,-!p1@SNAI2!0.74!104.32!SNAI2;;chr5:92918894..92918912,+!p2@NR2F1!0.73!15.65!NR2F1;;chr1:164528911..164528940,+!p7@PBX1!0.73!6.86!PBX1;;chr14:62203595..62203676,+!p4@HIF1A!0.72!8.51!HIF1A;;chr20:51588873..51588953,+!p1@TSHZ2!0.72!5.77!TSHZ2;;chr2:66662895..66662907,+!p3@MEIS1!0.72!5.49!MEIS1;;chr1:221052840..221052875,+!p4@HLX!0.72!5.22!HLX;;chr11:113930425..113930471,+!p1@ZBTB16!0.71!6.31!ZBTB16;;chr12:66218836..66218888,+!p1@HMGA2!0.70!42.83!HMGA2;;chr7:19157043..19157088,-!p2@TWIST1!0.70!10.98!TWIST1;;chr17:46622114..46622138,-!p4@HOXB2!0.69!6.31!HOXB2;;chr1:164528687..164528711,+!p6@PBX1!0.69!4.67!PBX1;;chr7:27196267..27196311,-!p1@HOXA7!0.69!3.84!HOXA7;;chr10:131762504..131762555,-!p1@EBF3!0.69!3.84!EBF3;;chr20:50721803..50721857,-!p2@ZFP64!0.68!6.31!ZFP64;;chr10:63809013..63809041,+!p3@ARID5B!0.67!23.34!ARID5B;;chr19:31840130..31840160,-!p2@TSHZ3!0.67!6.04!TSHZ3;;chr18:53068911..53068935,-!p4@TCF4!0.66!4.12!TCF4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.66!3.84!GLIS1;;chr15:37390850..37390909,-!p3@MEIS2!0.65!7.41!MEIS2;;chr8:106330696..106330719,+!p2@ZFPM2!0.65!4.67!ZFPM2;;chr5:92920456..92920488,+!p9@NR2F1!0.65!4.12!NR2F1;;chr11:12696071..12696086,+!p3@TEAD1!0.64!4.67!TEAD1;;chr14:62162224..62162254,+!p1@HIF1A!0.63!562.25!HIF1A;;chr18:19749517..19749531,+!p3@GATA6!0.63!6.31!GATA6;;chr1:164528866..164528877,+!p12@PBX1!0.63!3.29!PBX1;;chr2:176994408..176994492,+!p1@HOXD8!0.63!3.29!HOXD8;;chr2:66662510..66662521,+!p6@MEIS1!0.63!3.29!MEIS1;;chr8:48650715..48650735,-!p1@CEBPD!0.62!490.05!CEBPD;;chr17:46622070..46622109,-!p1@HOXB2!0.62!7.96!HOXB2;;chr7:113726357..113726443,+!p1@FOXP2!0.62!6.04!FOXP2;;chr17:46687959..46688007,-!p2@HOXB7!0.62!4.67!HOXB7;;chr15:76629123..76629151,+!p1@ISL2!0.62!3.57!ISL2;;chr10:63809106..63809127,+!p1@ARID5B!0.61!49.69!ARID5B;;chr15:96874145..9687416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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000280;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001155;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor2.CNhs11963.11320-117D6.hg38.nobarcode.ctss.bed.gz
|id=FF:11320-117D6
|id=FF:11320-117D6
|is_a=EFO:0002091;;FF:0000181
|is_a=EFO:0002091;;FF:0000181
Line 46: Line 54:
|library_id=CNhs11963
|library_id=CNhs11963
|library_id_phase_based=2:CNhs11963
|library_id_phase_based=2:CNhs11963
|name="Smooth Muscle Cells - Colonic, donor2"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11320
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.GAGTGG.11320
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11320
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.GAGTGG.11320
|name=Smooth Muscle Cells - Colonic, donor2
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11963,LSID836,release011,COMPLETED"
|profile_hcage=CNhs11963,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq="SRhi10011,,,"
|profile_srnaseq=SRhi10011,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=TAL1_TCF{3,4,12}:2.30481890291;NKX3-1:1.88634002332;ALX4:1.6110932107;ESR1:1.52943718555;GZF1:1.34750085267;GLI1..3:1.30951021559;NFIX:1.30127541653;UFEwm:1.26331292478;PAX1,9:1.25959496764;ATF6:1.16728603843;HOXA9_MEIS1:1.1608127303;TFAP4:1.08312767551;YY1:1.07133707435;ZNF238:1.05403815157;RXRA_VDR{dimer}:0.973748043203;KLF4:0.972815238121;CDC5L:0.966455810348;TEAD1:0.902232310339;MYBL2:0.891668564062;GFI1B:0.890869292001;EN1,2:0.881368121115;DBP:0.875960213635;HSF1,2:0.875703097236;EBF1:0.857979245126;HOX{A5,B5}:0.856768537847;GFI1:0.800082845267;ZIC1..3:0.752978193282;NKX2-2,8:0.733796329966;NR3C1:0.690837036597;IKZF1:0.687009001672;TEF:0.686918349639;TBX4,5:0.683636803987;NKX2-1,4:0.683159667746;NANOG{mouse}:0.668397887616;TOPORS:0.656531125803;XBP1:0.645128085239;SRF:0.644474992508;TLX1..3_NFIC{dimer}:0.641999454351;SOX17:0.638553704695;ZNF423:0.597898855074;PBX1:0.588576564508;MZF1:0.588150987482;TP53:0.573029122105;POU6F1:0.568103997888;PAX5:0.565557449353;EVI1:0.543298820168;HMGA1,2:0.531244773218;HAND1,2:0.515319776524;GTF2A1,2:0.511483121917;RXR{A,B,G}:0.500363226626;ARID5B:0.500130688418;HOX{A4,D4}:0.488531016507;GTF2I:0.471697027675;PATZ1:0.463643875467;NR6A1:0.462739466957;NKX6-1,2:0.454974296444;LHX3,4:0.429856119885;ESRRA:0.424013051633;AIRE:0.401063839276;ZNF384:0.365965206496;NFE2L2:0.35038339719;TFAP2{A,C}:0.34274551048;HES1:0.312557307258;TBP:0.307538805797;NFE2L1:0.294566709979;GATA4:0.260436092696;NR1H4:0.254804089898;NR5A1,2:0.242930311254;HMX1:0.231409271698;POU1F1:0.229732540657;MAZ:0.228307897248;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.215141238971;E2F1..5:0.205971956266;NFATC1..3:0.203959520406;MYFfamily:0.184247392318;POU3F1..4:0.18257008942;MAFB:0.177804366191;CRX:0.173714893619;HLF:0.153739146611;FOXP1:0.149006799863;AR:0.126855969554;HNF4A_NR2F1,2:0.10993700394;ZBTB16:0.109025926389;TFCP2:0.0940739206644;TFDP1:0.0932283533028;AHR_ARNT_ARNT2:0.0826562466367;HIC1:0.0796879825726;SREBF1,2:0.0773404131809;LEF1_TCF7_TCF7L1,2:0.0564586653378;NFY{A,B,C}:0.0529554145387;ZNF143:0.0458682267023;PAX4:0.042579095822;MTE{core}:0.0299761929588;HNF1A:0.0278811945995;FOXM1:0.0258900175276;SPZ1:0.0237576790636;STAT5{A,B}:0.0231316897561;NRF1:0.00481668321835;ZBTB6:-0.0149327782652;ELK1,4_GABP{A,B1}:-0.0215169253524;PPARG:-0.0436946279263;ADNP_IRX_SIX_ZHX:-0.0450098767675;SMAD1..7,9:-0.0598293287216;CDX1,2,4:-0.0614269728736;FOXD3:-0.0619762201445;PAX8:-0.0699312750894;ONECUT1,2:-0.07081813372;PRDM1:-0.0708746294352;XCPE1{core}:-0.0720645187497;SP1:-0.085082784721;PAX6:-0.0906269064304;GCM1,2:-0.0946286033381;STAT1,3:-0.13496612093;MYB:-0.139084536864;ZNF148:-0.157080688952;REST:-0.161363687822;TLX2:-0.162304358398;bHLH_family:-0.166211954918;NHLH1,2:-0.190363462889;EGR1..3:-0.228827688205;BACH2:-0.230451161974;SOX5:-0.242126017969;RFX1:-0.249816064757;FOS_FOS{B,L1}_JUN{B,D}:-0.268735130865;NKX2-3_NKX2-5:-0.270511483103;HIF1A:-0.271027063327;RREB1:-0.290635799448;OCT4_SOX2{dimer}:-0.30848426699;CEBPA,B_DDIT3:-0.313006117003;FOXQ1:-0.316589189825;NKX3-2:-0.319220789926;TFAP2B:-0.321070801606;PITX1..3:-0.354613024293;FOSL2:-0.35728290526;RFX2..5_RFXANK_RFXAP:-0.370982887002;ALX1:-0.381007514746;PRRX1,2:-0.381451074922;FOX{F1,F2,J1}:-0.384050266075;FOX{I1,J2}:-0.384619774729;RBPJ:-0.390256872339;ATF2:-0.397248152338;DMAP1_NCOR{1,2}_SMARC:-0.399829065035;IRF1,2:-0.404580424115;MED-1{core}:-0.404674529502;IRF7:-0.412089595854;NANOG:-0.417851833209;CREB1:-0.43561593023;NFE2:-0.442391978377;ELF1,2,4:-0.452141206149;PAX2:-0.452283694231;ZFP161:-0.452377099242;JUN:-0.456799671756;SOX2:-0.460251543074;NFKB1_REL_RELA:-0.475507537734;FOXN1:-0.482277205655;PAX3,7:-0.489190868992;RUNX1..3:-0.491067072389;BPTF:-0.496139467346;STAT2,4,6:-0.500836649905;FOXP3:-0.506444267724;TGIF1:-0.509275125894;MTF1:-0.511669356968;HOX{A6,A7,B6,B7}:-0.512084216904;LMO2:-0.517678261008;ATF4:-0.517692174489;MEF2{A,B,C,D}:-0.528788477063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.534489760235;FOXL1:-0.547298897368;T:-0.547799957989;GATA6:-0.558182916012;ATF5_CREB3:-0.578592093969;POU5F1:-0.580850337224;FOXA2:-0.600461111394;SOX{8,9,10}:-0.604741137838;ETS1,2:-0.610654385486;SPIB:-0.627774117778;FOXO1,3,4:-0.630233769909;FOX{D1,D2}:-0.646040997641;SPI1:-0.700276547016;VSX1,2:-0.709539652953;POU2F1..3:-0.713629746132;SNAI1..3:-0.736705727423;BREu{core}:-0.750536481317;PDX1:-0.786319484914;EP300:-0.788914514996;CUX2:-0.891027008582;IKZF2:-0.895410288691;ZEB1:-0.909008698545;RORA:-0.95156717624;NFIL3:-1.05216474992;HBP1_HMGB_SSRP1_UBTF:-1.18435961344;MYOD1:-1.28723210873
|top_motifs=TAL1_TCF{3,4,12}:2.30481890291;NKX3-1:1.88634002332;ALX4:1.6110932107;ESR1:1.52943718555;GZF1:1.34750085267;GLI1..3:1.30951021559;NFIX:1.30127541653;UFEwm:1.26331292478;PAX1,9:1.25959496764;ATF6:1.16728603843;HOXA9_MEIS1:1.1608127303;TFAP4:1.08312767551;YY1:1.07133707435;ZNF238:1.05403815157;RXRA_VDR{dimer}:0.973748043203;KLF4:0.972815238121;CDC5L:0.966455810348;TEAD1:0.902232310339;MYBL2:0.891668564062;GFI1B:0.890869292001;EN1,2:0.881368121115;DBP:0.875960213635;HSF1,2:0.875703097236;EBF1:0.857979245126;HOX{A5,B5}:0.856768537847;GFI1:0.800082845267;ZIC1..3:0.752978193282;NKX2-2,8:0.733796329966;NR3C1:0.690837036597;IKZF1:0.687009001672;TEF:0.686918349639;TBX4,5:0.683636803987;NKX2-1,4:0.683159667746;NANOG{mouse}:0.668397887616;TOPORS:0.656531125803;XBP1:0.645128085239;SRF:0.644474992508;TLX1..3_NFIC{dimer}:0.641999454351;SOX17:0.638553704695;ZNF423:0.597898855074;PBX1:0.588576564508;MZF1:0.588150987482;TP53:0.573029122105;POU6F1:0.568103997888;PAX5:0.565557449353;EVI1:0.543298820168;HMGA1,2:0.531244773218;HAND1,2:0.515319776524;GTF2A1,2:0.511483121917;RXR{A,B,G}:0.500363226626;ARID5B:0.500130688418;HOX{A4,D4}:0.488531016507;GTF2I:0.471697027675;PATZ1:0.463643875467;NR6A1:0.462739466957;NKX6-1,2:0.454974296444;LHX3,4:0.429856119885;ESRRA:0.424013051633;AIRE:0.401063839276;ZNF384:0.365965206496;NFE2L2:0.35038339719;TFAP2{A,C}:0.34274551048;HES1:0.312557307258;TBP:0.307538805797;NFE2L1:0.294566709979;GATA4:0.260436092696;NR1H4:0.254804089898;NR5A1,2:0.242930311254;HMX1:0.231409271698;POU1F1:0.229732540657;MAZ:0.228307897248;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.215141238971;E2F1..5:0.205971956266;NFATC1..3:0.203959520406;MYFfamily:0.184247392318;POU3F1..4:0.18257008942;MAFB:0.177804366191;CRX:0.173714893619;HLF:0.153739146611;FOXP1:0.149006799863;AR:0.126855969554;HNF4A_NR2F1,2:0.10993700394;ZBTB16:0.109025926389;TFCP2:0.0940739206644;TFDP1:0.0932283533028;AHR_ARNT_ARNT2:0.0826562466367;HIC1:0.0796879825726;SREBF1,2:0.0773404131809;LEF1_TCF7_TCF7L1,2:0.0564586653378;NFY{A,B,C}:0.0529554145387;ZNF143:0.0458682267023;PAX4:0.042579095822;MTE{core}:0.0299761929588;HNF1A:0.0278811945995;FOXM1:0.0258900175276;SPZ1:0.0237576790636;STAT5{A,B}:0.0231316897561;NRF1:0.00481668321835;ZBTB6:-0.0149327782652;ELK1,4_GABP{A,B1}:-0.0215169253524;PPARG:-0.0436946279263;ADNP_IRX_SIX_ZHX:-0.0450098767675;SMAD1..7,9:-0.0598293287216;CDX1,2,4:-0.0614269728736;FOXD3:-0.0619762201445;PAX8:-0.0699312750894;ONECUT1,2:-0.07081813372;PRDM1:-0.0708746294352;XCPE1{core}:-0.0720645187497;SP1:-0.085082784721;PAX6:-0.0906269064304;GCM1,2:-0.0946286033381;STAT1,3:-0.13496612093;MYB:-0.139084536864;ZNF148:-0.157080688952;REST:-0.161363687822;TLX2:-0.162304358398;bHLH_family:-0.166211954918;NHLH1,2:-0.190363462889;EGR1..3:-0.228827688205;BACH2:-0.230451161974;SOX5:-0.242126017969;RFX1:-0.249816064757;FOS_FOS{B,L1}_JUN{B,D}:-0.268735130865;NKX2-3_NKX2-5:-0.270511483103;HIF1A:-0.271027063327;RREB1:-0.290635799448;OCT4_SOX2{dimer}:-0.30848426699;CEBPA,B_DDIT3:-0.313006117003;FOXQ1:-0.316589189825;NKX3-2:-0.319220789926;TFAP2B:-0.321070801606;PITX1..3:-0.354613024293;FOSL2:-0.35728290526;RFX2..5_RFXANK_RFXAP:-0.370982887002;ALX1:-0.381007514746;PRRX1,2:-0.381451074922;FOX{F1,F2,J1}:-0.384050266075;FOX{I1,J2}:-0.384619774729;RBPJ:-0.390256872339;ATF2:-0.397248152338;DMAP1_NCOR{1,2}_SMARC:-0.399829065035;IRF1,2:-0.404580424115;MED-1{core}:-0.404674529502;IRF7:-0.412089595854;NANOG:-0.417851833209;CREB1:-0.43561593023;NFE2:-0.442391978377;ELF1,2,4:-0.452141206149;PAX2:-0.452283694231;ZFP161:-0.452377099242;JUN:-0.456799671756;SOX2:-0.460251543074;NFKB1_REL_RELA:-0.475507537734;FOXN1:-0.482277205655;PAX3,7:-0.489190868992;RUNX1..3:-0.491067072389;BPTF:-0.496139467346;STAT2,4,6:-0.500836649905;FOXP3:-0.506444267724;TGIF1:-0.509275125894;MTF1:-0.511669356968;HOX{A6,A7,B6,B7}:-0.512084216904;LMO2:-0.517678261008;ATF4:-0.517692174489;MEF2{A,B,C,D}:-0.528788477063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.534489760235;FOXL1:-0.547298897368;T:-0.547799957989;GATA6:-0.558182916012;ATF5_CREB3:-0.578592093969;POU5F1:-0.580850337224;FOXA2:-0.600461111394;SOX{8,9,10}:-0.604741137838;ETS1,2:-0.610654385486;SPIB:-0.627774117778;FOXO1,3,4:-0.630233769909;FOX{D1,D2}:-0.646040997641;SPI1:-0.700276547016;VSX1,2:-0.709539652953;POU2F1..3:-0.713629746132;SNAI1..3:-0.736705727423;BREu{core}:-0.750536481317;PDX1:-0.786319484914;EP300:-0.788914514996;CUX2:-0.891027008582;IKZF2:-0.895410288691;ZEB1:-0.909008698545;RORA:-0.95156717624;NFIL3:-1.05216474992;HBP1_HMGB_SSRP1_UBTF:-1.18435961344;MYOD1:-1.28723210873
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11320-117D6;search_select_hide=table117:FF:11320-117D6
}}
}}

Latest revision as of 17:51, 4 June 2020

Name:Smooth Muscle Cells - Colonic, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11963
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecolon
dev stagefetus
sexunknown
agefetal
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1151
catalog numberSC2945
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005674
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11963 CAGE DRX008484 DRR009356
Accession ID Hg19

Library idBAMCTSS
CNhs11963 DRZ000781 DRZ002166
Accession ID Hg38

Library idBAMCTSS
CNhs11963 DRZ012131 DRZ013516
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005674
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.GAGTGG sRNA-Seq DRX037181 DRR041547
Accession ID Hg19

Library idBAMCTSS
SRhi10011.GAGTGG DRZ007189


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0405
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.19
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.105
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00775
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.117
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0842
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0289
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.485
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.138
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.278
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.113
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.261
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.19
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0635
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.14
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.105
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.105
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.88
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.709
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.375
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.685
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.322
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11963

Jaspar motifP-value
MA0002.20.0362
MA0003.10.478
MA0004.10.299
MA0006.10.139
MA0007.10.138
MA0009.10.234
MA0014.10.517
MA0017.10.355
MA0018.23.1874e-4
MA0019.10.281
MA0024.10.884
MA0025.18.87536e-5
MA0027.10.995
MA0028.10.646
MA0029.10.906
MA0030.10.112
MA0031.10.0192
MA0035.20.245
MA0038.10.914
MA0039.20.0272
MA0040.10.481
MA0041.10.25
MA0042.10.563
MA0043.19.05615e-4
MA0046.10.424
MA0047.20.00698
MA0048.10.0773
MA0050.12.15449e-4
MA0051.13.73097e-4
MA0052.10.00236
MA0055.10.116
MA0057.10.957
MA0058.10.333
MA0059.10.741
MA0060.10.804
MA0061.14.79643e-4
MA0062.22.93394e-6
MA0065.20.686
MA0066.10.348
MA0067.11.78015e-4
MA0068.10.239
MA0069.10.221
MA0070.10.903
MA0071.10.211
MA0072.10.404
MA0073.10.52
MA0074.10.363
MA0076.10.0695
MA0077.10.335
MA0078.10.754
MA0079.20.268
MA0080.25.50059e-12
MA0081.10.00585
MA0083.10.0856
MA0084.10.273
MA0087.10.856
MA0088.10.0891
MA0090.10.0119
MA0091.10.00499
MA0092.10.7
MA0093.10.424
MA0099.25.9181e-10
MA0100.10.55
MA0101.12.14932e-5
MA0102.20.126
MA0103.15.65411e-4
MA0104.20.0322
MA0105.10.77
MA0106.10.0104
MA0107.19.87406e-7
MA0108.20.786
MA0111.10.815
MA0112.20.0285
MA0113.10.634
MA0114.10.587
MA0115.10.172
MA0116.10.166
MA0117.10.385
MA0119.10.128
MA0122.10.035
MA0124.10.116
MA0125.10.691
MA0131.10.71
MA0135.10.054
MA0136.16.32056e-15
MA0137.20.12
MA0138.20.794
MA0139.10.912
MA0140.10.552
MA0141.10.839
MA0142.10.408
MA0143.10.804
MA0144.10.133
MA0145.10.234
MA0146.10.296
MA0147.10.05
MA0148.10.134
MA0149.10.534
MA0150.12.05066e-4
MA0152.10.0463
MA0153.10.378
MA0154.10.722
MA0155.10.217
MA0156.11.36552e-12
MA0157.10.0355
MA0159.10.344
MA0160.10.194
MA0162.10.0318
MA0163.10.0019
MA0164.10.756
MA0258.10.135
MA0259.10.195



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11963

Novel motifP-value
10.961
100.587
1000.164
1010.418
1020.0575
1030.943
1040.917
1050.0502
1060.685
1070.506
1080.877
1090.375
110.669
1100.0767
1110.524
1120.943
1130.0881
1140.938
1150.00354
1160.0155
1170.968
1180.987
1190.402
120.279
1200.158
1210.0818
1220.00824
1230.22
1240.291
1250.284
1260.801
1270.138
1280.371
1290.1
130.629
1300.108
1310.928
1320.692
1330.275
1340.42
1350.558
1360.203
1370.0271
1380.523
1390.356
140.151
1400.924
1410.968
1420.694
1430.376
1440.528
1450.658
1460.821
1470.207
1480.813
1490.133
150.183
1500.504
1510.573
1520.276
1530.826
1540.937
1553.50299e-4
1560.265
1570.921
1580.0057
1590.214
160.123
1600.46
1610.523
1620.106
1630.556
1640.119
1650.955
1660.0239
1670.495
1680.0454
1690.18
170.89
180.884
190.0197
20.27
200.374
210.207
220.542
230.862
240.925
250.19
260.399
270.947
280.174
290.401
30.655
300.591
310.537
326.10396e-20
330.916
340.714
350.524
360.0485
370.649
380.248
390.486
40.198
400.538
410.0271
420.465
430.894
440.236
450.254
460.751
470.989
480.999
490.214
50.75
500.696
510.761
520.72
530.162
540.936
550.968
560.981
570.687
580.205
590.308
60.619
600.358
610.615
620.347
630.902
640.806
650.912
660.755
670.906
680.826
690.509
70.615
700.0192
710.0548
720.28
730.138
740.042
750.78
760.89
770.461
780.223
790.00179
80.245
800.0456
810.95
820.877
830.505
840.683
850.845
860.254
870.128
880.526
890.628
90.922
900.733
910.941
920.848
930.0311
940.748
950.351
960.135
970.868
980.116
995.46138e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11963


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002504 (enteric smooth muscle cell)
1000279 (smooth muscle cell of large intestine)
1000280 (smooth muscle cell of colon)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001135 (smooth muscle tissue)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001555 (digestive tract)
0000059 (large intestine)
0002204 (musculoskeletal system)
0005409 (gastrointestinal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000180 (human smooth muscle cell of intestine sample)
0000181 (human smooth muscle of colon sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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