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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005509
|DRA_sample_Accession=CAGE@SAMD00005509
|accession_numbers=CAGE;DRX008102;DRR008974;DRZ000399;DRZ001784
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005509
|accession_numbers=CAGE;DRX008102;DRR008974;DRZ000399;DRZ001784;DRZ011749;DRZ013134
|accession_numbers_RNASeq=sRNA-Seq;DRX037254;DRR041620;DRZ007262
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001013,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002190,UBERON:0002072,UBERON:0002416
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002521
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002521
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11371.11336-117F4.hg38.nobarcode.ctss.bed.gz
|id=FF:11336-117F4
|id=FF:11336-117F4
|is_a=EFO:0002091;;FF:0000011
|is_a=EFO:0002091;;FF:0000011
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|library_id=CNhs11371
|library_id=CNhs11371
|library_id_phase_based=2:CNhs11371
|library_id_phase_based=2:CNhs11371
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11336
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GGCTAC.11336
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11336
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GGCTAC.11336
|name=Adipocyte - subcutaneous, donor2
|name=Adipocyte - subcutaneous, donor2
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 91: Line 106:
|top_motifs=HES1:1.69143853801;NKX2-2,8:1.67302611908;ESRRA:1.6628600215;ZNF238:1.63234225061;EN1,2:1.43429570589;ATF6:1.36985625005;NFE2L1:1.35748994775;bHLH_family:1.2984383322;XBP1:1.26852845934;HAND1,2:1.24867089991;AR:1.21916982539;MAFB:1.21899790562;LHX3,4:1.16286885289;ZNF423:1.08823553991;NR3C1:1.05951242494;ALX4:0.986454584296;HOX{A6,A7,B6,B7}:0.965038290729;TFAP4:0.952089764123;TFCP2:0.91610488383;EBF1:0.861219142993;GZF1:0.821355757319;IKZF1:0.803324155842;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.798708157354;TAL1_TCF{3,4,12}:0.760466207907;ESR1:0.755091754996;UFEwm:0.724610414096;NR1H4:0.670277078764;HIF1A:0.663393554429;KLF4:0.651740583222;ZBTB6:0.635346554703;MYFfamily:0.629999302251;TLX1..3_NFIC{dimer}:0.61210342334;STAT5{A,B}:0.586691510492;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.575975845199;SMAD1..7,9:0.564391075843;ZNF148:0.553452089255;STAT2,4,6:0.524224819627;SPZ1:0.508903283532;NFE2L2:0.504472477029;SRF:0.504031213832;HOX{A4,D4}:0.488208308133;HNF4A_NR2F1,2:0.477574791783;TP53:0.43633739883;HSF1,2:0.422764969277;GFI1B:0.411991701519;HOX{A5,B5}:0.408145179428;EVI1:0.398565843152;NHLH1,2:0.349748474451;GATA4:0.32357009226;PDX1:0.323305221462;TEAD1:0.322452141977;HNF1A:0.321817574594;HLF:0.308347422776;MYBL2:0.307061622107;PAX5:0.303127238467;NR5A1,2:0.302077414782;NKX3-2:0.270884707113;GCM1,2:0.250466620106;RXRA_VDR{dimer}:0.245762727186;GTF2I:0.242062366931;NFATC1..3:0.241658544969;FOS_FOS{B,L1}_JUN{B,D}:0.235530907373;ZIC1..3:0.223346016062;PRRX1,2:0.198450443;TGIF1:0.196071813039;TBP:0.195131895261;MTF1:0.183956773092;NFIX:0.161084380962;RXR{A,B,G}:0.134048664872;GTF2A1,2:0.110305824473;PAX4:0.0936630176114;HMX1:0.0805962548412;RREB1:0.0592370139343;BACH2:0.0571134126538;FOSL2:0.0427915195154;TFAP2B:0.0354562619725;PPARG:0.0264035494739;HIC1:0.0257139629935;LEF1_TCF7_TCF7L1,2:0.0132043300758;CEBPA,B_DDIT3:0.00781954975396;GLI1..3:0.00762259406395;TBX4,5:0.00706306816914;EP300:-0.0118669509814;NFE2:-0.0195693747418;FOXO1,3,4:-0.0420925328843;POU6F1:-0.0527435608184;T:-0.052947794401;TFAP2{A,C}:-0.0552051757089;DMAP1_NCOR{1,2}_SMARC:-0.0849993919654;PAX1,9:-0.0951767212347;NFIL3:-0.119722926365;REST:-0.122922540357;FOX{I1,J2}:-0.125066762529;POU3F1..4:-0.128387870165;YY1:-0.159726228509;SOX5:-0.161919775469;PRDM1:-0.179275824811;IRF1,2:-0.19883043413;RFX1:-0.21599072793;MEF2{A,B,C,D}:-0.232235212687;NKX6-1,2:-0.243378463253;NKX2-3_NKX2-5:-0.261024886858;FOXP3:-0.275894576531;MTE{core}:-0.278234239371;ZNF384:-0.290699855904;FOXQ1:-0.297024386338;NANOG{mouse}:-0.306240985104;AHR_ARNT_ARNT2:-0.309030877888;NANOG:-0.311205595605;ELK1,4_GABP{A,B1}:-0.318689438847;FOX{D1,D2}:-0.33160557333;TOPORS:-0.336716013973;MZF1:-0.338426035735;NFKB1_REL_RELA:-0.352472435954;PATZ1:-0.374976734415;PAX6:-0.377422388582;RBPJ:-0.381367741868;JUN:-0.38414328647;RORA:-0.388685086526;DBP:-0.389739751091;MAZ:-0.398554329313;ONECUT1,2:-0.404042015578;TEF:-0.406284500276;NKX2-1,4:-0.425272861182;HOXA9_MEIS1:-0.432342460402;NRF1:-0.444312293954;FOXD3:-0.450937050529;SPI1:-0.471735908589;PBX1:-0.473265471732;ZNF143:-0.492917827074;NR6A1:-0.498715323832;PAX8:-0.516014630363;SOX17:-0.529626291176;RUNX1..3:-0.537517058179;XCPE1{core}:-0.555338049761;FOXL1:-0.561611037675;SNAI1..3:-0.563965252615;ZEB1:-0.56435809117;GATA6:-0.575736082015;MYB:-0.581484320904;CDC5L:-0.583575515385;PAX2:-0.58394923717;MED-1{core}:-0.585367082823;EGR1..3:-0.594751422292;ELF1,2,4:-0.604637172048;TLX2:-0.608567540487;ETS1,2:-0.612697897122;ARID5B:-0.613145069475;ZBTB16:-0.614614592056;CRX:-0.632255632868;SPIB:-0.632330715485;LMO2:-0.635744969856;NKX3-1:-0.668043473975;CUX2:-0.672911998785;ATF2:-0.688371479756;GFI1:-0.69750499242;RFX2..5_RFXANK_RFXAP:-0.698407155718;IRF7:-0.706648638156;TFDP1:-0.737770906853;ZFP161:-0.761672845501;SREBF1,2:-0.774964315948;SOX{8,9,10}:-0.776221716739;ALX1:-0.777339959128;FOXA2:-0.786676908299;STAT1,3:-0.79696317471;OCT4_SOX2{dimer}:-0.79745368783;CDX1,2,4:-0.831241186117;NFY{A,B,C}:-0.836880513937;ATF5_CREB3:-0.840054361289;PAX3,7:-0.849468916335;ADNP_IRX_SIX_ZHX:-0.860473156607;HBP1_HMGB_SSRP1_UBTF:-0.867586274848;MYOD1:-0.869887339021;AIRE:-0.875289204707;FOX{F1,F2,J1}:-0.883702957868;VSX1,2:-0.885677271104;SP1:-1.00163365552;CREB1:-1.02820193075;POU2F1..3:-1.03692206675;BREu{core}:-1.1140441635;E2F1..5:-1.13846759305;SOX2:-1.20298112134;FOXM1:-1.24895112246;POU1F1:-1.25868965447;HMGA1,2:-1.33836537941;FOXP1:-1.36506712769;BPTF:-1.3808288033;ATF4:-1.38433249717;PITX1..3:-1.53329416486;FOXN1:-1.72045085475;IKZF2:-1.7832382564;POU5F1:-1.88570803907
|top_motifs=HES1:1.69143853801;NKX2-2,8:1.67302611908;ESRRA:1.6628600215;ZNF238:1.63234225061;EN1,2:1.43429570589;ATF6:1.36985625005;NFE2L1:1.35748994775;bHLH_family:1.2984383322;XBP1:1.26852845934;HAND1,2:1.24867089991;AR:1.21916982539;MAFB:1.21899790562;LHX3,4:1.16286885289;ZNF423:1.08823553991;NR3C1:1.05951242494;ALX4:0.986454584296;HOX{A6,A7,B6,B7}:0.965038290729;TFAP4:0.952089764123;TFCP2:0.91610488383;EBF1:0.861219142993;GZF1:0.821355757319;IKZF1:0.803324155842;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.798708157354;TAL1_TCF{3,4,12}:0.760466207907;ESR1:0.755091754996;UFEwm:0.724610414096;NR1H4:0.670277078764;HIF1A:0.663393554429;KLF4:0.651740583222;ZBTB6:0.635346554703;MYFfamily:0.629999302251;TLX1..3_NFIC{dimer}:0.61210342334;STAT5{A,B}:0.586691510492;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.575975845199;SMAD1..7,9:0.564391075843;ZNF148:0.553452089255;STAT2,4,6:0.524224819627;SPZ1:0.508903283532;NFE2L2:0.504472477029;SRF:0.504031213832;HOX{A4,D4}:0.488208308133;HNF4A_NR2F1,2:0.477574791783;TP53:0.43633739883;HSF1,2:0.422764969277;GFI1B:0.411991701519;HOX{A5,B5}:0.408145179428;EVI1:0.398565843152;NHLH1,2:0.349748474451;GATA4:0.32357009226;PDX1:0.323305221462;TEAD1:0.322452141977;HNF1A:0.321817574594;HLF:0.308347422776;MYBL2:0.307061622107;PAX5:0.303127238467;NR5A1,2:0.302077414782;NKX3-2:0.270884707113;GCM1,2:0.250466620106;RXRA_VDR{dimer}:0.245762727186;GTF2I:0.242062366931;NFATC1..3:0.241658544969;FOS_FOS{B,L1}_JUN{B,D}:0.235530907373;ZIC1..3:0.223346016062;PRRX1,2:0.198450443;TGIF1:0.196071813039;TBP:0.195131895261;MTF1:0.183956773092;NFIX:0.161084380962;RXR{A,B,G}:0.134048664872;GTF2A1,2:0.110305824473;PAX4:0.0936630176114;HMX1:0.0805962548412;RREB1:0.0592370139343;BACH2:0.0571134126538;FOSL2:0.0427915195154;TFAP2B:0.0354562619725;PPARG:0.0264035494739;HIC1:0.0257139629935;LEF1_TCF7_TCF7L1,2:0.0132043300758;CEBPA,B_DDIT3:0.00781954975396;GLI1..3:0.00762259406395;TBX4,5:0.00706306816914;EP300:-0.0118669509814;NFE2:-0.0195693747418;FOXO1,3,4:-0.0420925328843;POU6F1:-0.0527435608184;T:-0.052947794401;TFAP2{A,C}:-0.0552051757089;DMAP1_NCOR{1,2}_SMARC:-0.0849993919654;PAX1,9:-0.0951767212347;NFIL3:-0.119722926365;REST:-0.122922540357;FOX{I1,J2}:-0.125066762529;POU3F1..4:-0.128387870165;YY1:-0.159726228509;SOX5:-0.161919775469;PRDM1:-0.179275824811;IRF1,2:-0.19883043413;RFX1:-0.21599072793;MEF2{A,B,C,D}:-0.232235212687;NKX6-1,2:-0.243378463253;NKX2-3_NKX2-5:-0.261024886858;FOXP3:-0.275894576531;MTE{core}:-0.278234239371;ZNF384:-0.290699855904;FOXQ1:-0.297024386338;NANOG{mouse}:-0.306240985104;AHR_ARNT_ARNT2:-0.309030877888;NANOG:-0.311205595605;ELK1,4_GABP{A,B1}:-0.318689438847;FOX{D1,D2}:-0.33160557333;TOPORS:-0.336716013973;MZF1:-0.338426035735;NFKB1_REL_RELA:-0.352472435954;PATZ1:-0.374976734415;PAX6:-0.377422388582;RBPJ:-0.381367741868;JUN:-0.38414328647;RORA:-0.388685086526;DBP:-0.389739751091;MAZ:-0.398554329313;ONECUT1,2:-0.404042015578;TEF:-0.406284500276;NKX2-1,4:-0.425272861182;HOXA9_MEIS1:-0.432342460402;NRF1:-0.444312293954;FOXD3:-0.450937050529;SPI1:-0.471735908589;PBX1:-0.473265471732;ZNF143:-0.492917827074;NR6A1:-0.498715323832;PAX8:-0.516014630363;SOX17:-0.529626291176;RUNX1..3:-0.537517058179;XCPE1{core}:-0.555338049761;FOXL1:-0.561611037675;SNAI1..3:-0.563965252615;ZEB1:-0.56435809117;GATA6:-0.575736082015;MYB:-0.581484320904;CDC5L:-0.583575515385;PAX2:-0.58394923717;MED-1{core}:-0.585367082823;EGR1..3:-0.594751422292;ELF1,2,4:-0.604637172048;TLX2:-0.608567540487;ETS1,2:-0.612697897122;ARID5B:-0.613145069475;ZBTB16:-0.614614592056;CRX:-0.632255632868;SPIB:-0.632330715485;LMO2:-0.635744969856;NKX3-1:-0.668043473975;CUX2:-0.672911998785;ATF2:-0.688371479756;GFI1:-0.69750499242;RFX2..5_RFXANK_RFXAP:-0.698407155718;IRF7:-0.706648638156;TFDP1:-0.737770906853;ZFP161:-0.761672845501;SREBF1,2:-0.774964315948;SOX{8,9,10}:-0.776221716739;ALX1:-0.777339959128;FOXA2:-0.786676908299;STAT1,3:-0.79696317471;OCT4_SOX2{dimer}:-0.79745368783;CDX1,2,4:-0.831241186117;NFY{A,B,C}:-0.836880513937;ATF5_CREB3:-0.840054361289;PAX3,7:-0.849468916335;ADNP_IRX_SIX_ZHX:-0.860473156607;HBP1_HMGB_SSRP1_UBTF:-0.867586274848;MYOD1:-0.869887339021;AIRE:-0.875289204707;FOX{F1,F2,J1}:-0.883702957868;VSX1,2:-0.885677271104;SP1:-1.00163365552;CREB1:-1.02820193075;POU2F1..3:-1.03692206675;BREu{core}:-1.1140441635;E2F1..5:-1.13846759305;SOX2:-1.20298112134;FOXM1:-1.24895112246;POU1F1:-1.25868965447;HMGA1,2:-1.33836537941;FOXP1:-1.36506712769;BPTF:-1.3808288033;ATF4:-1.38433249717;PITX1..3:-1.53329416486;FOXN1:-1.72045085475;IKZF2:-1.7832382564;POU5F1:-1.88570803907
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11336-117F4;search_select_hide=table117:FF:11336-117F4
}}
}}

Latest revision as of 17:53, 4 June 2020

Name:Adipocyte - subcutaneous, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11371
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueadipose tissue
dev stage41 years old adult
sexfemale
age41
cell typeadipocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1375
catalog numberCA803sD-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005509
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11371 CAGE DRX008102 DRR008974
Accession ID Hg19

Library idBAMCTSS
CNhs11371 DRZ000399 DRZ001784
Accession ID Hg38

Library idBAMCTSS
CNhs11371 DRZ011749 DRZ013134
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005509
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.GGCTAC sRNA-Seq DRX037254 DRR041620
Accession ID Hg19

Library idBAMCTSS
SRhi10015.GGCTAC DRZ007262


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0407
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.388
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0.213
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0629
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.296
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.00864
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.583
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0385
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.389
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0681
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.584
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00951
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0146
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.52
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.355
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.934
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.019
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.213
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.261
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.57
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.213
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.462
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11371

Jaspar motifP-value
MA0002.20.304
MA0003.10.0571
MA0004.10.51
MA0006.10.719
MA0007.10.0968
MA0009.10.294
MA0014.10.685
MA0017.10.0888
MA0018.21.20544e-6
MA0019.10.325
MA0024.14.08995e-4
MA0025.18.27138e-4
MA0027.10.456
MA0028.10.105
MA0029.10.571
MA0030.10.178
MA0031.10.929
MA0035.20.93
MA0038.10.013
MA0039.20.173
MA0040.10.584
MA0041.10.321
MA0042.10.774
MA0043.18.64978e-6
MA0046.10.385
MA0047.20.305
MA0048.10.996
MA0050.10.00512
MA0051.10.342
MA0052.10.59
MA0055.10.393
MA0057.10.0812
MA0058.10.538
MA0059.10.024
MA0060.15.22303e-6
MA0061.10.83
MA0062.23.69334e-4
MA0065.20.00276
MA0066.10.0385
MA0067.10.0503
MA0068.10.239
MA0069.10.335
MA0070.10.813
MA0071.10.0803
MA0072.10.636
MA0073.10.793
MA0074.10.626
MA0076.10.0313
MA0077.10.282
MA0078.10.959
MA0079.20.298
MA0080.22.10195e-5
MA0081.10.312
MA0083.10.17
MA0084.10.455
MA0087.10.869
MA0088.10.325
MA0090.10.0597
MA0091.10.00189
MA0092.10.0425
MA0093.10.601
MA0099.20.00196
MA0100.10.416
MA0101.10.186
MA0102.20.192
MA0103.10.469
MA0104.20.179
MA0105.10.119
MA0106.10.0239
MA0107.10.285
MA0108.20.0735
MA0111.10.95
MA0112.22.0665e-4
MA0113.10.00672
MA0114.10.0416
MA0115.10.582
MA0116.10.0227
MA0117.10.509
MA0119.10.02
MA0122.10.95
MA0124.10.0571
MA0125.10.519
MA0131.10.29
MA0135.10.838
MA0136.11.2235e-5
MA0137.20.144
MA0138.20.267
MA0139.10.535
MA0140.10.689
MA0141.10.044
MA0142.10.888
MA0143.10.442
MA0144.10.197
MA0145.10.146
MA0146.10.387
MA0147.10.0647
MA0148.10.141
MA0149.10.279
MA0150.10.41
MA0152.10.211
MA0153.10.112
MA0154.10.0945
MA0155.10.263
MA0156.11.37835e-4
MA0157.10.297
MA0159.10.126
MA0160.10.164
MA0162.10.123
MA0163.16.42947e-4
MA0164.10.649
MA0258.10.0335
MA0259.10.406



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11371

Novel motifP-value
10.137
100.488
1000.749
1010.745
1020.4
1030.0956
1040.93
1050.0947
1060.0675
1070.0608
1080.482
1090.285
110.121
1100.195
1110.324
1120.0895
1130.199
1140.117
1150.055
1160.17
1170.594
1180.789
1190.706
120.672
1200.539
1210.688
1220.159
1230.152
1240.378
1250.637
1260.658
1270.249
1280.118
1290.317
130.712
1300.488
1310.368
1320.599
1330.538
1340.289
1350.119
1360.568
1370.914
1380.886
1390.06
140.457
1400.76
1410.942
1420.751
1430.0932
1440.274
1450.33
1460.362
1470.302
1480.141
1490.04
150.31
1500.509
1510.313
1520.229
1530.272
1540.676
1550.142
1560.423
1570.557
1580.134
1590.243
160.125
1600.0489
1610.571
1620.919
1630.96
1640.248
1650.942
1660.802
1670.877
1680.902
1690.00948
170.129
180.0153
190.0118
20.263
200.319
210.0347
220.138
230.0833
240.159
250.897
260.259
270.106
280.176
290.358
30.312
300.455
310.392
320.0054
330.634
340.388
350.321
360.722
370.0899
380.543
390.163
40.633
400.689
410.612
420.776
430.119
440.502
450.532
460.142
470.343
480.263
490.237
50.238
500.451
510.401
520.369
530.81
540.381
550.613
560.556
570.28
580.455
590.0685
60.558
600.386
610.496
620.182
630.118
640.413
650.202
660.583
670.323
680.23
690.217
70.629
700.0201
710.0616
720.403
730.119
740.0963
750.148
760.776
770.0032
780.877
790.112
80.0326
800.713
810.306
820.0733
830.923
840.414
850.0691
860.754
870.127
880.457
890.0293
90.269
900.755
910.365
920.041
930.92
940.154
950.763
960.701
970.98
980.0706
990.0424



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11371


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002521 (subcutaneous fat cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001013 (adipose tissue)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002190 (subcutaneous adipose tissue)
0002072 (hypodermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000011 (human subcutaneous adipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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