FFCP PHASE1:Hg19::chr12:6346978..6347022,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:6346978..6347022,- to FFCP PHASE1:Hg19::chr12:6346978..6347022,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_CU680149_5end | |||
|cluster_id=chr12:6346978..6347022,- | |||
|description=CAGE_peak_1_at_CU680149_5end | |||
|id=chr12:6346978..6347022,- | |||
|ontology_enrichment_celltype=CL:0000066!4.94e-21!254;CL:0002321!1.62e-14!248;CL:0000220!2.58e-14!246;CL:0002078!4.94e-14!44;CL:0000115!7.17e-12!35;CL:0000213!5.39e-11!57;CL:0000215!5.39e-11!57;CL:0000222!5.56e-09!119;CL:0002139!3.67e-08!24;CL:1000449!2.35e-07!16;CL:0002681!3.70e-07!13;CL:0002584!3.70e-07!13;CL:1000497!9.21e-07!18;CL:0002518!9.21e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.06e-16;36!CL:0002078;4.19e-12;45!CL:0002139;8.82e-12;24!CL:0000235;3.37e-11;6!CL:0000071;3.54e-11;18!CL:1000449;9.10e-11;15!CL:0002681;1.50e-10;12!CL:0002584;1.50e-10;12!CL:1000746;6.40e-10;7!CL:1000612;6.40e-10;7!CL:0002188;1.94e-09;5!CL:1000497;2.51e-09;17!CL:0002518;2.51e-09;17!CL:1000413;7.88e-08;9!CL:0000213;1.40e-07;58!CL:0000215;1.40e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,5.72e-18,36;CL:0002078,1.91e-17,45;CL:0000213,2.89e-12,58;CL:0000215,2.89e-12,58;CL:0002139,1.06e-11,24;CL:0000235,1.96e-11,6;CL:0000071,5.01e-11,18;CL:0002546,5.01e-11,18;CL:1000449,1.28e-10,15;CL:0002681,2.35e-10,12;CL:0002584,2.35e-10,12;CL:1000746,1.13e-09,7;CL:1000612,1.13e-09,7;CL:0002188,2.19e-09,5;CL:1000497,3.38e-09,17;CL:0002518,3.38e-09,17;CL:0000066,2.38e-08,253;CL:1000413,1.37e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;3.54e-11;18!UBERON:0005795;9.92e-07;10 | |||
|ontology_enrichment_disease=DOID:193!8.37e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:0060084;5.41e-09;3!DOID:127;5.41e-09;3!DOID:0060072;7.89e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,5.49e-09,3;DOID:127,5.49e-09,3;DOID:0060072,7.97e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000468!2.77e-10!659;UBERON:0000480!2.52e-09!626;UBERON:0000467!3.18e-09!625;UBERON:0000922!2.69e-08!612;UBERON:0000080!2.01e-07!18;UBERON:0002120!2.01e-07!18;UBERON:0004875!2.01e-07!18;UBERON:0005721!2.01e-07!18;UBERON:0005754!2.01e-07!18;UBERON:0007297!2.01e-07!18;UBERON:0000477!2.25e-07!286;UBERON:0004211!2.35e-07!16;UBERON:0001285!2.35e-07!16;UBERON:0007684!2.35e-07!16;UBERON:0003220!2.35e-07!16;UBERON:0004208!2.35e-07!16;UBERON:0004876!2.94e-07!20;UBERON:0006555!3.17e-07!17;UBERON:0005103!3.17e-07!17;UBERON:0000083!3.17e-07!17;UBERON:0009201!3.17e-07!17;UBERON:0004819!3.17e-07!17;UBERON:0006553!3.17e-07!17;UBERON:0003074!3.17e-07!17;UBERON:0003060!3.17e-07!17;UBERON:0000055!3.63e-07!69;UBERON:0001225!3.70e-07!13;UBERON:0008987!3.70e-07!13;UBERON:0002049!4.21e-07!79;UBERON:0007798!4.21e-07!79;UBERON:0002050!4.86e-07!605;UBERON:0005423!4.86e-07!605;UBERON:0000923!6.95e-07!604;UBERON:0005291!6.95e-07!604;UBERON:0006598!6.95e-07!604;UBERON:0002532!6.95e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;2.70e-13;15!UBERON:0004638;3.54e-11;18!UBERON:0001986;3.54e-11;18!UBERON:0004852;3.54e-11;18!UBERON:0006555;9.10e-11;15!UBERON:0004819;9.10e-11;15!UBERON:0001285;9.10e-11;15!UBERON:0007684;9.10e-11;15!UBERON:0001225;1.50e-10;12!UBERON:0008987;1.50e-10;12!UBERON:0000074;6.40e-10;7!UBERON:0001229;6.40e-10;7!UBERON:0006914;2.09e-09;25!UBERON:0000487;8.18e-09;22!UBERON:0001851;3.24e-08;15!UBERON:0003914;6.54e-08;74!UBERON:0003915;7.88e-08;9!UBERON:0004700;7.88e-08;9!UBERON:0001917;7.88e-08;9!UBERON:0006554;2.24e-07;30!UBERON:0001008;2.24e-07;30!UBERON:0000964;8.13e-07;4!UBERON:0010409;8.13e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000353,4.05e-13,15;UBERON:0004638,5.01e-11,18;UBERON:0001986,5.01e-11,18;UBERON:0004852,5.01e-11,18;UBERON:0004211,1.28e-10,15;UBERON:0009773,1.28e-10,15;UBERON:0001231,1.28e-10,15;UBERON:0001285,1.28e-10,15;UBERON:0007684,1.28e-10,15;UBERON:0004208,1.28e-10,15;UBERON:0001225,2.35e-10,12;UBERON:0008987,2.35e-10,12;UBERON:0006555,7.30e-10,16;UBERON:0004819,7.30e-10,16;UBERON:0010532,1.13e-09,7;UBERON:0000074,1.13e-09,7;UBERON:0001229,1.13e-09,7;UBERON:0001230,1.13e-09,7;UBERON:0003220,1.13e-09,7;UBERON:0005749,1.13e-09,7;UBERON:0004199,1.13e-09,7;UBERON:0004209,1.13e-09,7;UBERON:0004198,1.13e-09,7;UBERON:0006914,2.80e-09,25;UBERON:0000487,1.08e-08,22;UBERON:0005103,2.05e-08,8;UBERON:0000083,2.05e-08,8;UBERON:0009201,2.05e-08,8;UBERON:0006553,2.05e-08,8;UBERON:0003074,2.05e-08,8;UBERON:0003060,2.05e-08,8;UBERON:0004876,2.09e-08,11;UBERON:0001851,4.59e-08,15;UBERON:0003915,1.37e-07,9;UBERON:0004700,1.37e-07,9;UBERON:0001917,1.37e-07,9;UBERON:0000055,1.93e-07,68;UBERON:0000080,1.96e-07,9;UBERON:0002120,1.96e-07,9;UBERON:0004875,1.96e-07,9;UBERON:0005721,1.96e-07,9;UBERON:0005754,1.96e-07,9;UBERON:0007297,1.96e-07,9;UBERON:0007500,6.48e-07,59;UBERON:0001981,6.48e-07,59;UBERON:0004537,6.48e-07,59;UBERON:0006965,6.48e-07,59;UBERON:0000964,6.78e-07,4;UBERON:0010409,6.78e-07,4;UBERON:0004348,6.78e-07,4;UBERON:0005427,6.78e-07,4 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0.245733936501509,0.697801167972428,0.436882744260345,0.791300934685361,0.74259811776028,2.31978163009541,0.672325146451775,0,1.46062018077475,0,0.492484232307152,0.408001382488506,0,1.14494394852423,0.547497700291537,0.753255837568817,0.0764134057479513,0,0.0787107813136792,0,0,0.309632246632152,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0.971680998056939,0.257575567634187,0.145398238779565,0.377875943688809,0.242584061187816,0,0,0.619412741790207,0,0,0,0,0.645484683583826,0,0,0.545812300115692,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0.722878304769133,1.00267582127178,0.289693037921647,0,0,0.283604451492204,0.886917589850256,0.175669571386252,0.196468613246569,1.45718115317017,1.48313777113772,0.324547393654683,0.174129737299267,0.664789802594326,0,0,0,0.39752481473341,3.4409383804245,0,0.56530794192401,4.19499436209906,1.10047216776027,1.04497483268405,1.29208379584664,0.71153252537342,0.33472061276467,3.62546385398232,0,1.46437234528902,0.735326160691737,4.0507097394088,0.267899184852239,0.22452937262617,0.225222960966644,1.53316637465883,0,2.01521918323448,0,0,2.61656431285521,0,0.25326102332916,0,0.573673241497627,1.41867352879343,0,0,0.24666754841716,0,0.942974704487816,0.653847612453835,0.302714855289863,0,0.468642863667593,1.5608003841516,0,1.19558944441441,0.117434498643765,0.161872944368132,0,1.42907919878425,0.859840221182376,0.723280468230358,0,0,0,0,0.168336113954066,0.250237039743928,0.277064115484183,0,0,0.150238058906597,0.453728732640084,0.179389635688862,0,0,0.600182192168805,0.103052529238439,0,0.37223371266318,0,0.194874010322397,0.252433774244115,0.0920498986422993,0.323292113637624,0,0,0.169560592310488,3.09217365061275,0.818238361772504,0.286804595389004,0.365921118388786,0.132529768321485,0.813357600086629,0.310983165046111,1.00928340350251,0.72995471815166,0,0,0,0,0,0.591534000199219,0.842923450390509,0,0.772057809126758,0.653638332277218,0.474541238222193,0.404493924480493,1.17732879075208,0.38474715694639,1.4763109092493,1.40241773803446,0,0,0,0,0,0,0.245976877086227,0,1.31700342490351,0,1.80952150340936,0.0925884451585296,0,5.19967392639789,0,0,0,1.58803092537181,0.462985512576611,0.951270761172991,1.58040879591855,0,0,1.40402559083543,1.93220510975347,0.93733833986777,0,0.708875486211932,0.895585227028483,0.871901815541886,0.766765358330422,0,0,0,0,0,0.190493682876507,0,0,0,0.514137463516618,1.50171528921959,0,0,0.43596006883328,0.36669142910475,0.387815147273333,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0.904318131178758,0,0.199945982364114,1.2162378064119,1.50677127429638,8.43335757932127,0.479249710983165,0,0,0.144781306667579,0.410952645100767,0.358121926479791,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0.36807447515742,0.500170521059677,0.542530047399471,0.623912584592421,0.892144943985809,0.788512075169673,0.117141414992713,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0,0.128139149255701,0,0.482561763430822,0,0.308419387605311,0,0.164254312027618,0,0,0,0.601519410909855,0.552485933615378,0.114814448164607,0.182091168006717,0.524497659837696,1.35359883872224,0.924184045252977,0,2.92278449306521,0.73886140225013,5.68666920354483,8.6747789691023,1.0795795805107,1.54227252690289,0.812839312631559,1.00337954770971,2.80363900349542,0.831076008928724,0.447749509444357,0,0.261435451024901,0.512900250232778,0,0,0,0,0.247528499761764,0,0.650060246036521,0,0.290012154876366,0.308097234229289,0.307007349452259,0,0.107420244868274,0.290033387828457,0.0852266274161009,0,0.165284915360978,0.192190067365106,0.255225424989168,0.10115778085555,0,0.62962469366128,0,0.308033580176089,0,0.869932992075073,0.18532421910392,0.143124886741991,0.372158369359667,0,0,0.255897791311334,0,0,0,0,0,0.235624804691373,0.202182481573316,1.58510321173008,0.842516912477962,0,0.487426979262569,2.11300293513511,0.272999822815972,0.282810863907425,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0,0,0.845086807596724,0.143411352204052,0,0.7133421029625,0,2.11107635297664,0.658589785919804,0.379473173765715,0.699869440489966,0.0962221127255121,0,0,0.0941438007767792,1.29151611801369,3.36942951335251,0.886860307073351,0.229723400206959,0,0.764637207142375,0.569647187174163,0,0,0,0,0,0.213648142254946,0,0.490080431962063,0,0.865615277858669,0,0,0.199579371432817,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0.121360521749513,0,0.284136146806413,1.67121139316383,0.890894042497916,0.614321404198464,0,0,0,0,0,0.996239941255349,0,0,0.511343412510774,0,0,0.449341755736634,0,0,0.197286811273867,0,0,0,0.185536196323703,0,0,0.174919999992391,0,1.0241410345695,0.762760950878299,0.709163045303809,0,0,0,0,0,0,0,0.591095237907095,0,0.21787692703798,1.53366118706464,0.230850775511391,0,0.23056390438806,0.17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| ||
|short_description=p1@CU680149 | |||
}} | }} |
Latest revision as of 11:12, 24 July 2015
Short description: | p1@CU680149 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CU680149_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_CU680149_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 5.72e-18 | 36 |
meso-epithelial cell | 1.91e-17 | 45 |
lining cell | 2.89e-12 | 58 |
barrier cell | 2.89e-12 | 58 |
endothelial cell of vascular tree | 1.06e-11 | 24 |
macrophage | 1.96e-11 | 6 |
blood vessel endothelial cell | 5.01e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.01e-11 | 18 |
epithelial cell of nephron | 1.28e-10 | 15 |
kidney cortical cell | 2.35e-10 | 12 |
renal cortical epithelial cell | 2.35e-10 | 12 |
glomerular cell | 1.13e-09 | 7 |
kidney corpuscule cell | 1.13e-09 | 7 |
glomerular endothelial cell | 2.19e-09 | 5 |
kidney cell | 3.38e-09 | 17 |
kidney epithelial cell | 3.38e-09 | 17 |
epithelial cell | 2.38e-08 | 253 |
endothelial cell of artery | 1.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 5.49e-09 | 3 |
leiomyoma | 5.49e-09 | 3 |
benign neoplasm | 7.97e-07 | 4 |