FFCP PHASE1:Hg19::chr1:113249721..113249731,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:113249721..113249731,- to FFCP PHASE1:Hg19::chr1:113249721..113249731,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=389 | |EntrezGene=389 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=669 | |HGNC=669 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JR07,E9PLA2 | |UniProt=Q5JR07,E9PLA2 | ||
|association_with_transcript=0bp_to_ENST00000436685,ENST00000468093_5end | |||
|cluster_id=chr1:113249721..113249731,- | |||
|coexpression_cluster_id=C843 | |||
|description=CAGE_peak_3_at_RHOC_5end | |||
|id=chr1:113249721..113249731,- | |||
|ontology_enrichment_celltype=CL:0000222!9.17e-32!119;CL:0000055!9.01e-30!180;CL:0000220!5.63e-29!246;CL:0002321!6.04e-28!248;CL:0000144!2.55e-24!625;CL:0002371!8.31e-24!591;CL:0000548!1.93e-22!679;CL:0000004!1.93e-22!679;CL:0000255!1.93e-22!679;CL:0000012!4.77e-21!682;CL:0000183!2.93e-19!59;CL:0000680!5.12e-17!57;CL:0000056!5.12e-17!57;CL:0000355!5.12e-17!57;CL:0000187!1.36e-16!54;CL:0000192!5.87e-16!42;CL:0000514!5.87e-16!42;CL:0000057!1.99e-14!75;CL:0000393!1.56e-13!60;CL:0000211!1.56e-13!60;CL:0000359!2.47e-13!32;CL:0000213!3.42e-13!57;CL:0000215!3.42e-13!57;CL:0002078!2.76e-12!44;CL:0000066!6.11e-12!254;CL:0000115!9.20e-12!35;CL:0000003!2.95e-10!722;CL:0002139!3.92e-10!24;CL:0000071!1.51e-09!18;CL:0002546!1.51e-09!18;CL:1000449!2.01e-08!16;CL:1000497!8.69e-08!18;CL:0002518!8.69e-08!18;CL:0002681!1.23e-07!13;CL:0002584!1.23e-07!13;CL:0000063!5.72e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.02e-12;32!CL:0000192;7.93e-12;43!CL:0000115;1.55e-10;36!CL:0002139;3.07e-10;24!CL:0000071;1.28e-09;18!CL:0000187;1.61e-09;55!CL:0002078;7.66e-09;45!CL:0000213;8.83e-09;58!CL:0000215;8.83e-09;58!CL:1000449;1.77e-08;15!CL:1000497;9.70e-08;17!CL:0002518;9.70e-08;17!CL:0002681;1.13e-07;12!CL:0002584;1.13e-07;12!CL:0000393;1.97e-07;61!CL:0000211;1.97e-07;61!CL:0000349;3.66e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.26e-32,121;CL:0002321,7.55e-29,250;CL:0000680,2.47e-17,58;CL:0000056,2.47e-17,58;CL:0000355,2.47e-17,58;CL:0000187,6.69e-17,55;CL:0000192,3.07e-16,43;CL:0000514,3.07e-16,43;CL:0000057,7.20e-15,76;CL:0000393,7.71e-14,61;CL:0000211,7.71e-14,61;CL:0000213,1.30e-13,58;CL:0000215,1.30e-13,58;CL:0000359,1.89e-13,32;CL:0002078,1.06e-12,45;CL:0000115,2.92e-12,36;CL:0000066,1.30e-11,253;CL:0002139,3.22e-10,24;CL:0000071,1.26e-09,18;CL:0002546,1.26e-09,18;CL:1000449,2.11e-08,15;CL:1000497,9.99e-08,17;CL:0002518,9.99e-08,17;CL:0002681,1.25e-07,12;CL:0002584,1.25e-07,12;CL:0000076,2.56e-07,63;CL:0000349,4.07e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;7.93e-12;43!CL:0000222;1.27e-09;121!CL:0002546;1.28e-09;18!CL:0000355;2.28e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!2.42e-27!118;UBERON:0002049!9.89e-26!79;UBERON:0007798!9.89e-26!79;UBERON:0004872!1.37e-24!84;UBERON:0005256!4.53e-23!143;UBERON:0000055!5.05e-23!69;UBERON:0001981!2.73e-21!60;UBERON:0007500!2.73e-21!60;UBERON:0004537!2.73e-21!60;UBERON:0006965!2.73e-21!60;UBERON:0002100!3.27e-21!216;UBERON:0000490!3.78e-20!138;UBERON:0000914!8.77e-20!83;UBERON:0002329!8.77e-20!83;UBERON:0003077!8.77e-20!83;UBERON:0003059!8.77e-20!83;UBERON:0007282!8.77e-20!83;UBERON:0009618!8.77e-20!83;UBERON:0007285!8.77e-20!83;UBERON:0000486!3.20e-19!82;UBERON:0004290!1.88e-18!70;UBERON:0004535!1.97e-18!110;UBERON:0001009!6.03e-18!113;UBERON:0001637!1.61e-17!42;UBERON:0003509!1.61e-17!42;UBERON:0004572!1.61e-17!42;UBERON:0000119!3.03e-16!312;UBERON:0001134!1.24e-15!61;UBERON:0002036!1.24e-15!61;UBERON:0003082!1.24e-15!61;UBERON:0000483!1.43e-15!309;UBERON:0002385!1.75e-15!63;UBERON:0001015!1.75e-15!63;UBERON:0000383!1.75e-15!63;UBERON:0000926!3.06e-15!448;UBERON:0004120!3.06e-15!448;UBERON:0006603!3.06e-15!448;UBERON:0003104!6.27e-15!238;UBERON:0009142!6.27e-15!238;UBERON:0000468!8.37e-15!659;UBERON:0000480!2.43e-14!626;UBERON:0000467!2.79e-14!625;UBERON:0000475!7.02e-14!365;UBERON:0004573!3.81e-13!33;UBERON:0004571!3.81e-13!33;UBERON:0000481!1.90e-11!347;UBERON:0000477!7.41e-10!286;UBERON:0000487!9.68e-10!22;UBERON:0004111!1.31e-09!241;UBERON:0001986!1.51e-09!18;UBERON:0004638!1.51e-09!18;UBERON:0004852!1.51e-09!18;UBERON:0002050!4.00e-09!605;UBERON:0005423!4.00e-09!605;UBERON:0000923!4.03e-09!604;UBERON:0005291!4.03e-09!604;UBERON:0006598!4.03e-09!604;UBERON:0002532!4.03e-09!604;UBERON:0006914!5.47e-09!25;UBERON:0000353!7.91e-09!17;UBERON:0004211!2.01e-08!16;UBERON:0001285!2.01e-08!16;UBERON:0007684!2.01e-08!16;UBERON:0003220!2.01e-08!16;UBERON:0004208!2.01e-08!16;UBERON:0000922!2.68e-08!612;UBERON:0006555!3.50e-08!17;UBERON:0005103!3.50e-08!17;UBERON:0000083!3.50e-08!17;UBERON:0009201!3.50e-08!17;UBERON:0004819!3.50e-08!17;UBERON:0006553!3.50e-08!17;UBERON:0003074!3.50e-08!17;UBERON:0003060!3.50e-08!17;UBERON:0003102!4.20e-08!95;UBERON:0009569!6.50e-08!113;UBERON:0000025!1.01e-07!194;UBERON:0001225!1.23e-07!13;UBERON:0008987!1.23e-07!13;UBERON:0003103!1.33e-07!69;UBERON:0000947!1.52e-07!21;UBERON:0010191!1.52e-07!21;UBERON:0004876!1.55e-07!20;UBERON:0003081!1.79e-07!216;UBERON:0000080!1.93e-07!18;UBERON:0002120!1.93e-07!18;UBERON:0004875!1.93e-07!18;UBERON:0005721!1.93e-07!18;UBERON:0005754!1.93e-07!18;UBERON:0007297!1.93e-07!18;UBERON:0002199!7.36e-07!45;UBERON:0002416!7.36e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;5.67e-13;42!UBERON:0003509;5.67e-13;42!UBERON:0004572;5.67e-13;42!UBERON:0003914;6.00e-13;74!UBERON:0007500;2.15e-12;56!UBERON:0001981;2.15e-12;56!UBERON:0004537;2.15e-12;56!UBERON:0004573;5.23e-12;33!UBERON:0004571;5.23e-12;33!UBERON:0002049;5.69e-11;75!UBERON:0007798;5.69e-11;75!UBERON:0000055;9.25e-11;65!UBERON:0000487;8.12e-10;22!UBERON:0004638;1.28e-09;18!UBERON:0001986;1.28e-09;18!UBERON:0004852;1.28e-09;18!UBERON:0000490;4.01e-09;33!UBERON:0006914;5.64e-09;25!UBERON:0000353;1.02e-08;15!UBERON:0000025;1.37e-08;93!UBERON:0006555;1.77e-08;15!UBERON:0004819;1.77e-08;15!UBERON:0001285;1.77e-08;15!UBERON:0007684;1.77e-08;15!UBERON:0001225;1.13e-07;12!UBERON:0008987;1.13e-07;12!UBERON:0000947;1.26e-07;21!UBERON:0010191;1.26e-07;21!UBERON:0000119;7.28e-07;139 | |||
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| ||
|short_description=p3@RHOC | |||
}} | }} |
Latest revision as of 05:07, 16 September 2015
Short description: | p3@RHOC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RHOC_5end |
Coexpression cluster: | C843_Alveolar_Mesenchymal_Hepatic_Placental_Renal_Smooth_Fibroblast |
Association with transcript: | 0bp_to_ENST00000436685, ENST00000468093_5end |
EntrezGene: | RHOC |
HGNC: | 669 |
UniProt: | Q5JR07E9PLA2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.26e-32 | 121 |
embryonic cell | 7.55e-29 | 250 |
muscle precursor cell | 2.47e-17 | 58 |
myoblast | 2.47e-17 | 58 |
multi-potent skeletal muscle stem cell | 2.47e-17 | 58 |
muscle cell | 6.69e-17 | 55 |
smooth muscle cell | 3.07e-16 | 43 |
smooth muscle myoblast | 3.07e-16 | 43 |
fibroblast | 7.20e-15 | 76 |
electrically responsive cell | 7.71e-14 | 61 |
electrically active cell | 7.71e-14 | 61 |
lining cell | 1.30e-13 | 58 |
barrier cell | 1.30e-13 | 58 |
vascular associated smooth muscle cell | 1.89e-13 | 32 |
meso-epithelial cell | 1.06e-12 | 45 |
endothelial cell | 2.92e-12 | 36 |
epithelial cell | 1.30e-11 | 253 |
endothelial cell of vascular tree | 3.22e-10 | 24 |
blood vessel endothelial cell | 1.26e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.26e-09 | 18 |
epithelial cell of nephron | 2.11e-08 | 15 |
kidney cell | 9.99e-08 | 17 |
kidney epithelial cell | 9.99e-08 | 17 |
kidney cortical cell | 1.25e-07 | 12 |
renal cortical epithelial cell | 1.25e-07 | 12 |
squamous epithelial cell | 2.56e-07 | 63 |
extraembryonic cell | 4.07e-07 | 19 |