FFCP PHASE1:Hg19::chr1:28052456..28052515,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:28052456..28052515,+ to FFCP PHASE1:Hg19::chr1:28052456..28052515,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=199870 | |EntrezGene=199870 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28530 | |HGNC=28530 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TAV0,B4DWT3 | |UniProt=Q8TAV0,B4DWT3 | ||
|association_with_transcript=0bp_to_ENST00000373954,ENST00000419687,NM_001143912,NM_001143913,NM_001143914,NM_001143915,NM_152660,uc001boq.2,uc001bor.2,uc001bos.2,uc001bot.2,uc009vtb.2,uc010ofm.1_5end | |||
|cluster_id=chr1:28052456..28052515,+ | |||
|description=CAGE_peak_1_at_FAM76A_5end | |||
|id=chr1:28052456..28052515,+ | |||
|ontology_enrichment_celltype=CL:0000791!6.22e-09!18;CL:0000789!6.22e-09!18;CL:0002420!6.22e-09!18;CL:0002419!6.22e-09!18;CL:0000790!6.22e-09!18;CL:0000738!2.50e-08!140;CL:0000838!1.55e-07!52;CL:0000542!2.41e-07!53;CL:0000051!2.41e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.50e-09;18!CL:0000789;4.50e-09;18!CL:0002419;4.50e-09;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.71e-10,136;CL:0000791,6.22e-09,18;CL:0000789,6.22e-09,18;CL:0002420,6.22e-09,18;CL:0002419,6.22e-09,18;CL:0000790,6.22e-09,18;CL:0000838,1.55e-07,52;CL:0000542,2.41e-07,53;CL:0000051,2.41e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;4.50e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.74e-35!115;UBERON:0001049!5.02e-16!57;UBERON:0005068!5.02e-16!57;UBERON:0006241!5.02e-16!57;UBERON:0007135!5.02e-16!57;UBERON:0001017!4.49e-15!82;UBERON:0003080!1.80e-14!42;UBERON:0002780!2.52e-14!41;UBERON:0001890!2.52e-14!41;UBERON:0006240!2.52e-14!41;UBERON:0002616!4.61e-14!59;UBERON:0005743!4.91e-14!86;UBERON:0000955!2.00e-12!69;UBERON:0006238!2.00e-12!69;UBERON:0000073!4.98e-12!94;UBERON:0001016!4.98e-12!94;UBERON:0001893!2.43e-11!34;UBERON:0001869!8.43e-11!32;UBERON:0002791!8.72e-11!33;UBERON:0002020!1.36e-10!34;UBERON:0003528!1.36e-10!34;UBERON:0002619!6.58e-09!22;UBERON:0003075!7.05e-09!86;UBERON:0007284!7.05e-09!86;UBERON:0001950!1.24e-08!20;UBERON:0002346!1.38e-08!90;UBERON:0004121!2.78e-08!169;UBERON:0000924!3.68e-08!173;UBERON:0006601!3.68e-08!173;UBERON:0000956!4.98e-08!25;UBERON:0000203!4.98e-08!25;UBERON:0000153!6.41e-08!129;UBERON:0007811!6.41e-08!129;UBERON:0000033!4.59e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.03e-10;41!UBERON:0001890;2.03e-10;41!UBERON:0007023;3.68e-10;114!UBERON:0001893;6.91e-10;34!UBERON:0001869;1.02e-09;32!UBERON:0000073;2.00e-09;53!UBERON:0002616;2.00e-09;53!UBERON:0002791;2.68e-09;32!UBERON:0003528;3.12e-09;34!UBERON:0002020;3.12e-09;34!UBERON:0002619;6.19e-09;22!UBERON:0001950;1.16e-08;20!UBERON:0000956;6.17e-08;25!UBERON:0000203;6.17e-08;25!UBERON:0001017;6.68e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.90e-35,114;UBERON:0001049,7.33e-16,56;UBERON:0005068,7.33e-16,56;UBERON:0006241,7.33e-16,56;UBERON:0007135,7.33e-16,56;UBERON:0000073,1.74e-15,53;UBERON:0002616,1.74e-15,53;UBERON:0001017,6.78e-15,81;UBERON:0002780,2.52e-14,41;UBERON:0001890,2.52e-14,41;UBERON:0003080,2.52e-14,41;UBERON:0006240,2.52e-14,41;UBERON:0001016,1.07e-12,89;UBERON:0000955,2.99e-12,68;UBERON:0006238,2.99e-12,68;UBERON:0001893,2.43e-11,34;UBERON:0001869,8.43e-11,32;UBERON:0003528,1.36e-10,34;UBERON:0002020,1.36e-10,34;UBERON:0002791,2.82e-10,32;UBERON:0002619,6.58e-09,22;UBERON:0001950,1.24e-08,20;UBERON:0003075,3.12e-08,82;UBERON:0007284,3.12e-08,82;UBERON:0000956,4.98e-08,25;UBERON:0000203,4.98e-08,25;UBERON:0002346,5.95e-08,86;UBERON:0004121,9.57e-08,171;UBERON:0000924,9.57e-08,171;UBERON:0006601,9.57e-08,171;UBERON:0010371,1.87e-07,104;UBERON:0003056,9.93e-07,61 | |||
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| ||
|short_description=p1@FAM76A | |||
}} | }} |
Latest revision as of 09:00, 17 September 2015
Short description: | p1@FAM76A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FAM76A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000373954, ENST00000419687, NM_001143912, NM_001143913, NM_001143914, NM_001143915, NM_152660, uc001boq.2, uc001bor.2, uc001bos.2, uc001bot.2, uc009vtb.2, uc010ofm.1_5end |
EntrezGene: | FAM76A |
HGNC: | 28530 |
UniProt: | Q8TAV0B4DWT3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 9.71e-10 | 136 |
mature alpha-beta T cell | 6.22e-09 | 18 |
alpha-beta T cell | 6.22e-09 | 18 |
immature T cell | 6.22e-09 | 18 |
mature T cell | 6.22e-09 | 18 |
immature alpha-beta T cell | 6.22e-09 | 18 |
lymphoid lineage restricted progenitor cell | 1.55e-07 | 52 |
lymphocyte | 2.41e-07 | 53 |
common lymphoid progenitor | 2.41e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.90e-35 | 114 |
neural tube | 7.33e-16 | 56 |
neural rod | 7.33e-16 | 56 |
future spinal cord | 7.33e-16 | 56 |
neural keel | 7.33e-16 | 56 |
regional part of nervous system | 1.74e-15 | 53 |
regional part of brain | 1.74e-15 | 53 |
central nervous system | 6.78e-15 | 81 |
regional part of forebrain | 2.52e-14 | 41 |
forebrain | 2.52e-14 | 41 |
anterior neural tube | 2.52e-14 | 41 |
future forebrain | 2.52e-14 | 41 |
nervous system | 1.07e-12 | 89 |
brain | 2.99e-12 | 68 |
future brain | 2.99e-12 | 68 |
telencephalon | 2.43e-11 | 34 |
cerebral hemisphere | 8.43e-11 | 32 |
brain grey matter | 1.36e-10 | 34 |
gray matter | 1.36e-10 | 34 |
regional part of telencephalon | 2.82e-10 | 32 |
regional part of cerebral cortex | 6.58e-09 | 22 |
neocortex | 1.24e-08 | 20 |
neural plate | 3.12e-08 | 82 |
presumptive neural plate | 3.12e-08 | 82 |
cerebral cortex | 4.98e-08 | 25 |
pallium | 4.98e-08 | 25 |
neurectoderm | 5.95e-08 | 86 |
ectoderm-derived structure | 9.57e-08 | 171 |
ectoderm | 9.57e-08 | 171 |
presumptive ectoderm | 9.57e-08 | 171 |
ecto-epithelium | 1.87e-07 | 104 |
pre-chordal neural plate | 9.93e-07 | 61 |