FFCP PHASE1:Hg19::chr7:8008418..8008443,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:8008418..8008443,+ to FFCP PHASE1:Hg19::chr7:8008418..8008443,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=113263 | |EntrezGene=113263 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18713 | |HGNC=18713 | ||
|TSSclassifier=strong | |||
|UniProt=Q86VQ1 | |UniProt=Q86VQ1 | ||
|association_with_transcript=0bp_to_ENST00000223145,NM_138426,uc003srk.2_5end | |||
|cluster_id=chr7:8008418..8008443,+ | |||
|description=CAGE_peak_2_at_GLCCI1_5end | |||
|id=chr7:8008418..8008443,+ | |||
|ontology_enrichment_celltype=CL:0000542!9.07e-22!53;CL:0000051!9.07e-22!53;CL:0000838!1.29e-21!52;CL:0000084!9.39e-11!25;CL:0000827!9.39e-11!25;CL:0000945!3.42e-10!24;CL:0000826!3.42e-10!24;CL:0000791!1.27e-09!18;CL:0000789!1.27e-09!18;CL:0002420!1.27e-09!18;CL:0002419!1.27e-09!18;CL:0000790!1.27e-09!18;CL:0000236!4.23e-07!14;CL:0000625!7.93e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;4.55e-13;53!CL:0000084;6.38e-11;25!CL:0000945;1.95e-10;24!CL:0000791;1.25e-09;18!CL:0000789;1.25e-09;18!CL:0002419;1.25e-09;18!CL:0000236;5.56e-07;13!CL:0000625;6.47e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.59e-22,53;CL:0000051,6.59e-22,53;CL:0000838,9.38e-22,52;CL:0000084,8.12e-11,25;CL:0000827,8.12e-11,25;CL:0000945,2.98e-10,24;CL:0000826,2.98e-10,24;CL:0000791,1.12e-09,18;CL:0000789,1.12e-09,18;CL:0002420,1.12e-09,18;CL:0002419,1.12e-09,18;CL:0000790,1.12e-09,18;CL:0000236,3.88e-07,14;CL:0000625,7.29e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;4.55e-13;53!CL:0000790;1.25e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.60e-12!57;UBERON:0005068!2.60e-12!57;UBERON:0006241!2.60e-12!57;UBERON:0007135!2.60e-12!57;UBERON:0001017!5.80e-12!82;UBERON:0005743!6.43e-12!86;UBERON:0003080!8.98e-12!42;UBERON:0002780!9.07e-12!41;UBERON:0001890!9.07e-12!41;UBERON:0006240!9.07e-12!41;UBERON:0007023!3.10e-11!115;UBERON:0000955!3.93e-11!69;UBERON:0006238!3.93e-11!69;UBERON:0000073!4.11e-11!94;UBERON:0001016!4.11e-11!94;UBERON:0002616!4.25e-11!59;UBERON:0001869!3.58e-10!32;UBERON:0001893!4.59e-10!34;UBERON:0002020!7.78e-10!34;UBERON:0003528!7.78e-10!34;UBERON:0002791!1.01e-09!33;UBERON:0002619!1.31e-08!22;UBERON:0001950!2.93e-08!20;UBERON:0000956!3.46e-08!25;UBERON:0000203!3.46e-08!25;UBERON:0003056!2.17e-07!61;UBERON:0000153!8.00e-07!129;UBERON:0007811!8.00e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.19e-09;32!UBERON:0001893;3.94e-09;34!UBERON:0002791;4.21e-09;32!UBERON:0002780;6.62e-09;41!UBERON:0001890;6.62e-09;41!UBERON:0003528;7.42e-09;34!UBERON:0002020;7.42e-09;34!UBERON:0002619;1.21e-08;22!UBERON:0000956;2.20e-08;25!UBERON:0000203;2.20e-08;25!UBERON:0001950;2.88e-08;20!UBERON:0000073;9.31e-08;53!UBERON:0002616;9.31e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.02e-12,53;UBERON:0002616,1.02e-12,53;UBERON:0001049,2.36e-12,56;UBERON:0005068,2.36e-12,56;UBERON:0006241,2.36e-12,56;UBERON:0007135,2.36e-12,56;UBERON:0002780,7.72e-12,41;UBERON:0001890,7.72e-12,41;UBERON:0003080,7.72e-12,41;UBERON:0006240,7.72e-12,41;UBERON:0001017,8.07e-12,81;UBERON:0000955,5.54e-11,68;UBERON:0006238,5.54e-11,68;UBERON:0001016,6.47e-11,89;UBERON:0007023,7.56e-11,114;UBERON:0001869,3.13e-10,32;UBERON:0001893,4.01e-10,34;UBERON:0003528,6.83e-10,34;UBERON:0002020,6.83e-10,34;UBERON:0002791,8.02e-10,32;UBERON:0002619,1.17e-08,22;UBERON:0001950,2.63e-08,20;UBERON:0000956,3.11e-08,25;UBERON:0000203,3.11e-08,25;UBERON:0003056,1.22e-07,61;UBERON:0011216,4.08e-07,223;UBERON:0003075,7.05e-07,82;UBERON:0007284,7.05e-07,82 | |||
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| ||
|short_description=p2@GLCCI1 | |||
}} | }} |
Latest revision as of 16:35, 19 September 2015
Short description: | p2@GLCCI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GLCCI1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000223145, NM_138426, uc003srk.2_5end |
EntrezGene: | GLCCI1 |
HGNC: | 18713 |
UniProt: | Q86VQ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.59e-22 | 53 |
common lymphoid progenitor | 6.59e-22 | 53 |
lymphoid lineage restricted progenitor cell | 9.38e-22 | 52 |
T cell | 8.12e-11 | 25 |
pro-T cell | 8.12e-11 | 25 |
lymphocyte of B lineage | 2.98e-10 | 24 |
pro-B cell | 2.98e-10 | 24 |
mature alpha-beta T cell | 1.12e-09 | 18 |
alpha-beta T cell | 1.12e-09 | 18 |
immature T cell | 1.12e-09 | 18 |
mature T cell | 1.12e-09 | 18 |
immature alpha-beta T cell | 1.12e-09 | 18 |
B cell | 3.88e-07 | 14 |
CD8-positive, alpha-beta T cell | 7.29e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.02e-12 | 53 |
regional part of brain | 1.02e-12 | 53 |
neural tube | 2.36e-12 | 56 |
neural rod | 2.36e-12 | 56 |
future spinal cord | 2.36e-12 | 56 |
neural keel | 2.36e-12 | 56 |
regional part of forebrain | 7.72e-12 | 41 |
forebrain | 7.72e-12 | 41 |
anterior neural tube | 7.72e-12 | 41 |
future forebrain | 7.72e-12 | 41 |
central nervous system | 8.07e-12 | 81 |
brain | 5.54e-11 | 68 |
future brain | 5.54e-11 | 68 |
nervous system | 6.47e-11 | 89 |
adult organism | 7.56e-11 | 114 |
cerebral hemisphere | 3.13e-10 | 32 |
telencephalon | 4.01e-10 | 34 |
brain grey matter | 6.83e-10 | 34 |
gray matter | 6.83e-10 | 34 |
regional part of telencephalon | 8.02e-10 | 32 |
regional part of cerebral cortex | 1.17e-08 | 22 |
neocortex | 2.63e-08 | 20 |
cerebral cortex | 3.11e-08 | 25 |
pallium | 3.11e-08 | 25 |
pre-chordal neural plate | 1.22e-07 | 61 |
organ system subdivision | 4.08e-07 | 223 |
neural plate | 7.05e-07 | 82 |
presumptive neural plate | 7.05e-07 | 82 |