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(Created page with "{{f5samples |id=FF:11268-116G8 |name=Fibroblast - Cardiac, donor1 |sample_id=11268 |rna_tube_id=116G8 |rna_box=116 |rna_position=G8 |sample_cell_lot=N/A |sample_cell_c...")
 
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{{f5samples
{{f5samples
|id=FF:11268-116G8
|DRA_sample_Accession=CAGE@SAMD00005836
|name=Fibroblast - Cardiac, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005836
|sample_id=11268
|accession_numbers=CAGE;DRX008243;DRR009115;DRZ000540;DRZ001925;DRZ011890;DRZ013275
|rna_tube_id=116G8
|accession_numbers_RNASeq=sRNA-Seq;DRX037205;DRR041571;DRZ007213
|rna_box=116
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|rna_position=G8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1592.00000
|rna_catalog_number=CA306-R10f
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=22 weeks old fetus
|sample_tissue=heart
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=embryo 22week
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6
|profile_hcage=CNhs12498,LSID916,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10013,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002494,CL:0002548
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000948,UBERON:0001009,UBERON:0001048,UBERON:0001062,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003084,UBERON:0003914,UBERON:0004120,UBERON:0004140,UBERON:0004141,UBERON:0004291,UBERON:0004535,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0005498,UBERON:0007005,UBERON:0007100
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000059
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def="A fibroblast from cardiac tissue." [GOC:tfm]
|expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!1.62!40.37!NKX2-5;;chr8:11561684..11561751,+!p1@GATA4!1.62!40.37!GATA4;;chr2:19558373..19558392,-!p1@OSR1!1.56!93.63!OSR1;;chr7:35293685..35293718,-!p1@TBX20!1.55!34.76!TBX20;;chr4:174451370..174451387,-!p1@HAND2!1.41!24.67!HAND2;;chr5:172662303..172662320,-!p2@NKX2-5!1.36!21.87!NKX2-5;;chr6:19837592..19837621,+!p1@ID4!1.31!116.06!ID4;;chr1:170633348..170633399,+!p2@PRRX1!1.24!22.43!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.15!41.49!GATA6;;chr11:61520075..61520136,+!p1@C11orf9!1.15!28.03!C11orf9;;chr6:85474299..85474324,-!p1@TBX18!1.12!21.87!TBX18;;chr18:19749386..19749404,+!p2@GATA6!1.12!17.38!GATA6;;chr6:134210243..134210257,+!p1@TCF21!1.12!12.33!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.12!12.33!SOX17;;chr1:170632285..170632309,+!p1@PRRX1!1.11!13.46!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.09!58.31!CREB3L1;;chr2:45236540..45236577,-!p1@SIX2!1.09!11.21!SIX2;;chr4:174450089..174450153,-!p2@HAND2!1.02!9.53!HAND2;;chr1:170633262..170633285,+!p3@PRRX1!0.99!10.09!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!0.98!11.21!PRRX2;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.41!ZFY;;chr1:197886461..197886558,+!p1@LHX9!0.97!8.41!LHX9;;chr16:86600426..86600441,+!p1@FOXC2!0.96!20.75!FOXC2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.95!7.85!PEG3;;chrY:21906594..21906622,-!p1@KDM5D!0.95!7.85!KDM5D;;chr5:2751762..2751784,-!p1@IRX2!0.95!7.85!IRX2;;chr8:72756637..72756664,-!p3@MSC!0.92!8.41!MSC;;chr11:125034640..125034655,+!p1@PKNOX2!0.92!7.29!PKNOX2;;chr15:42749722..42749739,-!p2@ZFP106!0.90!12.90!ZFP106;;chr10:63809013..63809041,+!p3@ARID5B!0.89!39.81!ARID5B;;chr11:46299539..46299620,+!p2@CREB3L1!0.89!11.77!CREB3L1;;chr4:174451350..174451363,-!p3@HAND2!0.89!6.73!HAND2;;chr5:3595977..3595999,+!p1@IRX1!0.89!6.73!IRX1;;chr7:19157248..19157268,-!p1@TWIST1!0.88!19.06!TWIST1;;chr8:72756667..72756736,-!p2@MSC!0.88!10.65!MSC;;chr19:47523058..47523114,+!p1@NPAS1!0.86!6.17!NPAS1;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.09!PAWR;;chr8:72756267..72756296,-!p4@MSC!0.82!8.41!MSC;;chr1:170632959..170632987,+!p4@PRRX1!0.82!6.17!PRRX1;;chr5:172662230..172662241,-!p3@NKX2-5!0.82!5.61!NKX2-5;;chr5:3595961..3595975,+!p3@IRX1!0.82!5.61!IRX1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.82!5.61!SEBOX;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.61!SOX11;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.61!CREB3L1;;chr8:123793988..123794016,+!p1@ZHX2!0.79!9.53!ZHX2;;chr16:67881588..67881612,-!p2@CENPT!0.79!7.29!CENPT;;chr16:31076332..31076388,-!p3@ZNF668!0.78!5.05!ZNF668;;chr8:40755333..40755352,-!p1@ZMAT4!0.78!5.05!ZMAT4;;chr1:164528942..164528964,+!p11@PBX1!0.78!5.05!PBX1;;chr1:170633058..170633084,+!p5@PRRX1!0.78!5.05!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.78!5.05!EBF3;;chr9:132427883..132427951,+!p2@PRRX2!0.78!5.05!PRRX2;;chr12:66218255..66218304,+!p3@HMGA2!0.77!14.02!HMGA2;;chr15:100106670..100106697,+!p4@MEF2A!0.77!8.41!MEF2A;;chr8:106330656..106330684,+!p1@ZFPM2!0.74!12.90!ZFPM2;;chr6:10415276..10415341,-!p2@TFAP2A!0.74!5.61!TFAP2A;;chr8:93074803..93074845,-!p1@RUNX1T1!0.74!4.49!RUNX1T1;;chr11:125034605..125034636,+!p2@PKNOX2!0.74!4.49!PKNOX2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.41!GLIS2;;chr6:144329384..144329405,-!p1@PLAGL1!0.69!51.58!PLAGL1;;chr5:139492456..139492489,+!p7@PURA!0.69!3.92!PURA;;chr5:2751785..2751808,-!p2@IRX2!0.69!3.92!IRX2;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.92!MAFK;;chr17:35294075..35294102,+!p1@ENST00000559335!0.69!3.92!LHX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.92!PRRX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.68!6.73!TFAP2A;;chr2:85981222..85981259,+!p2@ATOH8!0.68!6.73!ATOH8;;chr1:8934931..8934947,-!p4@ENO1!0.67!13.46!ENO1;;chr12:80084167..80084197,-!p5@PAWR!0.67!9.53!PAWR;;chr10:63809106..63809127,+!p1@ARID5B!0.66!56.63!ARID5B;;chr14:62162285..62162296,+!p3@HIF1A!0.66!21.31!HIF1A;;chr6:126240356..126240379,+!p7@NCOA7!0.66!4.49!NCOA7;;chr14:61116183..61116208,-!p1@SIX1!0.65!15.14!SIX1;;chr18:19749517..19749531,+!p3@GATA6!0.65!6.73!GATA6;;chr12:3068544..3068597,+!p1@TEAD4!0.64!23.55!TEAD4;;chr2:239756739..239756755,+!p2@TWIST2!0.64!6.17!TWIST2;;chr12:80084137..80084165,-!p10@PAWR!0.64!4.49!PAWR;;chr13:45150455..45150472,-!p8@TSC22D1!0.64!3.36!TSC22D1;;chr1:170632115..170632136,+!p9@PRRX1!0.64!3.36!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.64!3.36!FOXS1;;chr16:67881534..67881549,-!p4@CENPT!0.64!3.36!CENPT;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!0.64!3.36!SEBOX;;chr5:321810..321877,+!p1@AHRR!0.63!11.77!AHRR;;chr8:72756063..72756125,-!p1@MSC!0.63!7.29!MSC;;chr11:65686732..65686756,+!p2@DRAP1!0.62!15.70!DRAP1;;chr7:150945754..150945789,-!p2@SMARCD3!0.62!11.21!SMARCD3;;chr19:13134772..13134822,+!p2@NFIX!0.62!5.05!NFIX;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.32!HIF1A;;chr12:80084279..80084293,-!p8@PAWR!0.61!5.61!PAWR;;chr5:72744594..72744609,-!p1@FOXD1!0.60!16.26!FOXD1;;chr6:126240380..126240430,+!p2@NCOA7!0.60!8.97!NCOA7;;chr17:1959369..1959388,+!p2@HIC1!0.60!8.97!HIC1;;chr17:3571863..3571881,-!p1@TAX1BP3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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002548;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg38.nobarcode.ctss.bed.gz
|id=FF:11268-116G8
|is_a=EFO:0002091;;FF:0000059
|is_obsolete=
|library_id=CNhs12498
|library_id_phase_based=2:CNhs12498
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11268
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TGACCA.11268
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11268
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TGACCA.11268
|name=Fibroblast - Cardiac, donor1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12498,LSID916,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.03299516705659,0,0.362529138108376,0.405287514971519,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539060578942455,0,0,0.096656598571488,0,0,0.228655496721894,0,0,0.377951574727979,0,0,0,0,0,0,0,0,0,0,0,0,0.249877808595661,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0971187613767046,0,0.229621031747347,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157668923714332,0,0,0,0.0350049909071819,0.108748232455077,0,0,0,0,-0.0980353512377064,0.0248294956940808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.275145864991027,0.438860830804405,0,0,0,0,0,0
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|rna_box=116
|rna_catalog_number=CA306-R10f
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1592
|rna_od260/230=
|rna_od260/280=
|rna_position=G8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116G8
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.TGACCA
|sample_age=embryo 22week
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=22 weeks old fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.00908784575532e-218!GO:0005737;cytoplasm;5.93652907023949e-206!GO:0043226;organelle;1.70207988942274e-169!GO:0043229;intracellular organelle;3.04883615889607e-169!GO:0043231;intracellular membrane-bound organelle;1.4899624313785e-158!GO:0043227;membrane-bound organelle;3.3184439446554e-158!GO:0044444;cytoplasmic part;5.57900019309471e-146!GO:0044422;organelle part;1.25558055127054e-131!GO:0044446;intracellular organelle part;2.54125683455581e-130!GO:0032991;macromolecular complex;4.86946739945392e-96!GO:0005515;protein binding;7.59539556836789e-95!GO:0030529;ribonucleoprotein complex;1.15437306867735e-81!GO:0044237;cellular metabolic process;4.16405539921544e-74!GO:0044238;primary metabolic process;1.12628996693785e-73!GO:0005739;mitochondrion;9.24646065821651e-66!GO:0043170;macromolecule metabolic process;1.23753867117697e-65!GO:0043233;organelle lumen;2.42044798042949e-64!GO:0031974;membrane-enclosed lumen;2.42044798042949e-64!GO:0003723;RNA binding;3.37799281871029e-61!GO:0044428;nuclear part;4.83377939710721e-57!GO:0019538;protein metabolic process;1.43197188566483e-54!GO:0005840;ribosome;9.77883103762855e-54!GO:0016043;cellular component organization and biogenesis;2.54742191342242e-53!GO:0006412;translation;4.06960648139218e-52!GO:0005634;nucleus;3.41534705502867e-50!GO:0044260;cellular macromolecule metabolic process;1.95422289273972e-49!GO:0043234;protein complex;2.33301411104025e-49!GO:0031090;organelle membrane;1.31107470335176e-48!GO:0044267;cellular protein metabolic process;3.28171097025851e-48!GO:0003735;structural constituent of ribosome;1.93885279890313e-47!GO:0009058;biosynthetic process;1.36248331268082e-45!GO:0044429;mitochondrial part;1.677984435111e-44!GO:0044249;cellular biosynthetic process;1.20488065247285e-42!GO:0009059;macromolecule biosynthetic process;2.05693840833648e-42!GO:0005829;cytosol;3.17926799101831e-42!GO:0033279;ribosomal subunit;9.53442249943702e-42!GO:0015031;protein transport;8.11270575020511e-41!GO:0033036;macromolecule localization;1.65011329931486e-40!GO:0006396;RNA processing;2.67704356611396e-40!GO:0045184;establishment of protein localization;3.64290212107715e-38!GO:0031967;organelle envelope;3.72178516623578e-38!GO:0008104;protein localization;6.91428636828173e-38!GO:0031975;envelope;8.97561473167281e-38!GO:0043228;non-membrane-bound organelle;1.78621095501887e-35!GO:0043232;intracellular non-membrane-bound organelle;1.78621095501887e-35!GO:0031981;nuclear lumen;3.19614389525928e-35!GO:0046907;intracellular transport;5.09873801835701e-33!GO:0006996;organelle organization and biogenesis;1.33200504310954e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.39777539863666e-31!GO:0016071;mRNA metabolic process;3.59929190016817e-31!GO:0065003;macromolecular complex assembly;1.03327486341945e-30!GO:0043283;biopolymer metabolic process;4.03843946520514e-30!GO:0008380;RNA splicing;1.45691615338271e-29!GO:0005740;mitochondrial envelope;6.55762226373489e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.34577927986037e-28!GO:0022607;cellular component assembly;3.03949054264611e-28!GO:0031966;mitochondrial membrane;2.44589005538269e-27!GO:0006886;intracellular protein transport;4.33013784811145e-27!GO:0006397;mRNA processing;1.29248573643525e-26!GO:0010467;gene expression;1.47061831571856e-26!GO:0019866;organelle inner membrane;2.55571041009191e-26!GO:0005743;mitochondrial inner membrane;1.46501239984909e-24!GO:0044445;cytosolic part;1.64942483704993e-24!GO:0006119;oxidative phosphorylation;3.89067423589105e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.34906909496683e-22!GO:0051649;establishment of cellular localization;1.35336394609439e-21!GO:0015934;large ribosomal subunit;1.39696534782056e-21!GO:0005783;endoplasmic reticulum;1.91329449906668e-21!GO:0051641;cellular localization;2.30539402241057e-21!GO:0015935;small ribosomal subunit;3.31790274982362e-21!GO:0044455;mitochondrial membrane part;5.60001836753689e-21!GO:0005681;spliceosome;6.20856248994819e-21!GO:0005654;nucleoplasm;1.06309307926356e-20!GO:0016462;pyrophosphatase activity;1.84079310646762e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.16109009214602e-19!GO:0031980;mitochondrial lumen;2.17850236806655e-19!GO:0005759;mitochondrial matrix;2.17850236806655e-19!GO:0012505;endomembrane system;2.28139578068605e-19!GO:0000166;nucleotide binding;2.37904762321941e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.81813051153043e-19!GO:0006457;protein folding;4.36645699115234e-19!GO:0048770;pigment granule;6.84932018203583e-19!GO:0042470;melanosome;6.84932018203583e-19!GO:0006259;DNA metabolic process;1.04785481267621e-18!GO:0017111;nucleoside-triphosphatase activity;1.25055324587011e-18!GO:0005746;mitochondrial respiratory chain;5.17141354128361e-18!GO:0007049;cell cycle;1.38120640428422e-17!GO:0016874;ligase activity;2.4622221431916e-17!GO:0044451;nucleoplasm part;4.93903636165017e-17!GO:0022618;protein-RNA complex assembly;5.66564098675049e-17!GO:0044432;endoplasmic reticulum part;1.7013240445044e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.08241609559191e-16!GO:0008134;transcription factor binding;4.63272917408122e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.91517491409187e-16!GO:0005794;Golgi apparatus;7.7189707715621e-16!GO:0005730;nucleolus;9.64704375688398e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.43081785997354e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.49500581538816e-15!GO:0003954;NADH dehydrogenase activity;1.49500581538816e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.49500581538816e-15!GO:0051186;cofactor metabolic process;2.1601688119775e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.16400837055974e-15!GO:0008135;translation factor activity, nucleic acid binding;8.0544199932896e-15!GO:0044265;cellular macromolecule catabolic process;1.4097250728552e-14!GO:0016192;vesicle-mediated transport;1.52479450041656e-14!GO:0006512;ubiquitin cycle;1.62873187163795e-14!GO:0005761;mitochondrial ribosome;1.62980605317506e-14!GO:0000313;organellar ribosome;1.62980605317506e-14!GO:0032553;ribonucleotide binding;3.07407738266817e-14!GO:0032555;purine ribonucleotide binding;3.07407738266817e-14!GO:0006605;protein targeting;4.65588642419896e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.69768809018055e-14!GO:0042773;ATP synthesis coupled electron transport;7.69768809018055e-14!GO:0043285;biopolymer catabolic process;9.41909756023695e-14!GO:0012501;programmed cell death;9.84124214314704e-14!GO:0051082;unfolded protein binding;9.94838832296279e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.11795909120279e-13!GO:0045271;respiratory chain complex I;1.11795909120279e-13!GO:0005747;mitochondrial respiratory chain complex I;1.11795909120279e-13!GO:0017076;purine nucleotide binding;1.19491474855578e-13!GO:0048193;Golgi vesicle transport;1.35375313977878e-13!GO:0043412;biopolymer modification;1.4058547402525e-13!GO:0009057;macromolecule catabolic process;1.47877997083965e-13!GO:0006915;apoptosis;3.18611722933987e-13!GO:0022402;cell cycle process;3.51148911130401e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.64574028200216e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.23489552161611e-13!GO:0006464;protein modification process;1.11446038304472e-12!GO:0048523;negative regulation of cellular process;1.28936550028351e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.92476089383544e-12!GO:0008219;cell death;1.92855621229609e-12!GO:0016265;death;1.92855621229609e-12!GO:0000278;mitotic cell cycle;2.17360660835757e-12!GO:0042254;ribosome biogenesis and assembly;2.79594241610624e-12!GO:0019941;modification-dependent protein catabolic process;3.3829346191151e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.3829346191151e-12!GO:0044257;cellular protein catabolic process;3.65328168101281e-12!GO:0006511;ubiquitin-dependent protein catabolic process;4.49722903474981e-12!GO:0044248;cellular catabolic process;5.05626772167146e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.93002495319101e-12!GO:0000375;RNA splicing, via transesterification reactions;5.93002495319101e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.93002495319101e-12!GO:0006732;coenzyme metabolic process;7.41673578853595e-12!GO:0030163;protein catabolic process;1.28485529020081e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.91412436121991e-11!GO:0009055;electron carrier activity;3.4314136436599e-11!GO:0005793;ER-Golgi intermediate compartment;3.89880396609209e-11!GO:0048519;negative regulation of biological process;4.84721190748578e-11!GO:0005789;endoplasmic reticulum membrane;5.14562087164723e-11!GO:0003743;translation initiation factor activity;5.26960108756618e-11!GO:0006413;translational initiation;6.19843981673245e-11!GO:0005524;ATP binding;1.12630942455119e-10!GO:0009259;ribonucleotide metabolic process;1.18829694660895e-10!GO:0003712;transcription cofactor activity;1.25317445057804e-10!GO:0043687;post-translational protein modification;1.36145063045076e-10!GO:0032559;adenyl ribonucleotide binding;1.3998720491957e-10!GO:0006163;purine nucleotide metabolic process;2.88171916762665e-10!GO:0005635;nuclear envelope;3.30361065798447e-10!GO:0008639;small protein conjugating enzyme activity;3.30897926248186e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.93755091287573e-10!GO:0009150;purine ribonucleotide metabolic process;6.61532461219479e-10!GO:0030554;adenyl nucleotide binding;6.90160545645082e-10!GO:0003676;nucleic acid binding;7.35852562607614e-10!GO:0004842;ubiquitin-protein ligase activity;7.83949534598285e-10!GO:0006446;regulation of translational initiation;1.49666510992205e-09!GO:0019787;small conjugating protein ligase activity;1.55119663164238e-09!GO:0006164;purine nucleotide biosynthetic process;1.67530775093603e-09!GO:0031965;nuclear membrane;1.80364113687292e-09!GO:0042623;ATPase activity, coupled;1.8130412764224e-09!GO:0009260;ribonucleotide biosynthetic process;1.98684778768252e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.038176179316e-09!GO:0006461;protein complex assembly;2.05993489846336e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.36963297445897e-09!GO:0006913;nucleocytoplasmic transport;2.89970737799351e-09!GO:0016887;ATPase activity;3.29318368462482e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.36941472155632e-09!GO:0051726;regulation of cell cycle;3.51549397934494e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.67939586134172e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.82597893107894e-09!GO:0008565;protein transporter activity;3.94549200689743e-09!GO:0044453;nuclear membrane part;4.05867331519097e-09!GO:0000074;regulation of progression through cell cycle;4.40267666299365e-09!GO:0043067;regulation of programmed cell death;4.61135614617094e-09!GO:0042981;regulation of apoptosis;5.65040135945612e-09!GO:0051169;nuclear transport;5.84313034400954e-09!GO:0006974;response to DNA damage stimulus;6.64146989054466e-09!GO:0009141;nucleoside triphosphate metabolic process;6.85385434780762e-09!GO:0030120;vesicle coat;7.52960831092284e-09!GO:0030662;coated vesicle membrane;7.52960831092284e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.54660128483436e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.54660128483436e-09!GO:0003924;GTPase activity;8.13329083225347e-09!GO:0051276;chromosome organization and biogenesis;8.63611297829561e-09!GO:0006323;DNA packaging;8.97455171971283e-09!GO:0006399;tRNA metabolic process;9.34134123450828e-09!GO:0051246;regulation of protein metabolic process;1.02635909397045e-08!GO:0015986;ATP synthesis coupled proton transport;1.31829204899833e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31829204899833e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.36027760238961e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.58482847517534e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.58482847517534e-08!GO:0016881;acid-amino acid ligase activity;1.71569661602724e-08!GO:0009060;aerobic respiration;2.28993563461431e-08!GO:0005768;endosome;2.70950348194988e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.27530145003547e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.27530145003547e-08!GO:0045333;cellular respiration;3.91061635113121e-08!GO:0017038;protein import;4.22077180473709e-08!GO:0016023;cytoplasmic membrane-bound vesicle;4.38576981761904e-08!GO:0005788;endoplasmic reticulum lumen;5.21042396508032e-08!GO:0019829;cation-transporting ATPase activity;5.35089547654085e-08!GO:0046034;ATP metabolic process;5.35089547654085e-08!GO:0006366;transcription from RNA polymerase II promoter;5.72338992974913e-08!GO:0005694;chromosome;6.2709300629935e-08!GO:0000087;M phase of mitotic cell cycle;6.51851691290941e-08!GO:0031988;membrane-bound vesicle;6.53029787576541e-08!GO:0007067;mitosis;6.80243597431921e-08!GO:0022403;cell cycle phase;7.72669516929851e-08!GO:0043069;negative regulation of programmed cell death;8.21972505536692e-08!GO:0016604;nuclear body;8.235723505587e-08!GO:0051188;cofactor biosynthetic process;8.55568234587297e-08!GO:0065004;protein-DNA complex assembly;8.74441772661479e-08!GO:0006364;rRNA processing;8.74508761292842e-08!GO:0006333;chromatin assembly or disassembly;9.7268504470872e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.03541194739207e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.03541194739207e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.03541194739207e-07!GO:0048475;coated membrane;1.14893657506548e-07!GO:0030117;membrane coat;1.14893657506548e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.17829364161765e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.24542815108892e-07!GO:0043066;negative regulation of apoptosis;1.58050147019194e-07!GO:0016072;rRNA metabolic process;1.74092311063997e-07!GO:0006754;ATP biosynthetic process;1.88602640745604e-07!GO:0006753;nucleoside phosphate metabolic process;1.88602640745604e-07!GO:0009117;nucleotide metabolic process;1.88632694376306e-07!GO:0016491;oxidoreductase activity;1.93206705678063e-07!GO:0043038;amino acid activation;2.11308706730896e-07!GO:0006418;tRNA aminoacylation for protein translation;2.11308706730896e-07!GO:0043039;tRNA aminoacylation;2.11308706730896e-07!GO:0016070;RNA metabolic process;2.28946082367289e-07!GO:0016049;cell growth;2.29504613935118e-07!GO:0008361;regulation of cell size;2.6532507222261e-07!GO:0009056;catabolic process;2.77630700266932e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.09296179063209e-07!GO:0044427;chromosomal part;3.18599062822798e-07!GO:0005643;nuclear pore;3.2114878750175e-07!GO:0065002;intracellular protein transport across a membrane;3.31741633686909e-07!GO:0006916;anti-apoptosis;3.36380787229558e-07!GO:0007005;mitochondrion organization and biogenesis;3.50835820216369e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.11556661595641e-07!GO:0006793;phosphorus metabolic process;4.52973179950197e-07!GO:0006796;phosphate metabolic process;4.52973179950197e-07!GO:0006260;DNA replication;5.18472430800447e-07!GO:0009719;response to endogenous stimulus;5.34242492764265e-07!GO:0044431;Golgi apparatus part;5.41165510180501e-07!GO:0000785;chromatin;6.82937343885007e-07!GO:0031410;cytoplasmic vesicle;7.75052217560162e-07!GO:0031982;vesicle;8.21671927739993e-07!GO:0001558;regulation of cell growth;8.81702937500032e-07!GO:0030036;actin cytoskeleton organization and biogenesis;9.53949358077945e-07!GO:0045259;proton-transporting ATP synthase complex;1.03459579746238e-06!GO:0008026;ATP-dependent helicase activity;1.23255327065403e-06!GO:0051301;cell division;1.32691935001318e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.32938802581312e-06!GO:0006099;tricarboxylic acid cycle;1.34134615634932e-06!GO:0046356;acetyl-CoA catabolic process;1.34134615634932e-06!GO:0016310;phosphorylation;1.35398668285271e-06!GO:0046930;pore complex;1.49659959942904e-06!GO:0006281;DNA repair;1.56333764851895e-06!GO:0004386;helicase activity;1.61548851261278e-06!GO:0008092;cytoskeletal protein binding;1.64101711860744e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.65458863726612e-06!GO:0006752;group transfer coenzyme metabolic process;1.78951550468598e-06!GO:0006334;nucleosome assembly;1.78951550468598e-06!GO:0051187;cofactor catabolic process;1.95697251359765e-06!GO:0016567;protein ubiquitination;2.05567355349685e-06!GO:0031252;leading edge;2.05922425491636e-06!GO:0031324;negative regulation of cellular metabolic process;2.09892033517807e-06!GO:0032446;protein modification by small protein conjugation;2.13331018330662e-06!GO:0030029;actin filament-based process;2.1659811468756e-06!GO:0016853;isomerase activity;2.58948468145751e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.80705655750139e-06!GO:0031497;chromatin assembly;2.85516520268781e-06!GO:0009109;coenzyme catabolic process;2.86692348536875e-06!GO:0050794;regulation of cellular process;3.07746912881292e-06!GO:0003714;transcription corepressor activity;3.37857253940811e-06!GO:0005525;GTP binding;3.42103583205347e-06!GO:0016607;nuclear speck;4.12095885775262e-06!GO:0016740;transferase activity;4.22351364608637e-06!GO:0005798;Golgi-associated vesicle;4.44193912981454e-06!GO:0006084;acetyl-CoA metabolic process;4.44193912981454e-06!GO:0048522;positive regulation of cellular process;5.40848632095077e-06!GO:0005773;vacuole;6.26612371758256e-06!GO:0007010;cytoskeleton organization and biogenesis;6.2772371586982e-06!GO:0016564;transcription repressor activity;6.346910828968e-06!GO:0009108;coenzyme biosynthetic process;6.4229725902549e-06!GO:0045786;negative regulation of progression through cell cycle;6.53943901996791e-06!GO:0044440;endosomal part;7.36140914039721e-06!GO:0010008;endosome membrane;7.36140914039721e-06!GO:0005762;mitochondrial large ribosomal subunit;7.57531369095796e-06!GO:0000315;organellar large ribosomal subunit;7.57531369095796e-06!GO:0015980;energy derivation by oxidation of organic compounds;7.58866361084634e-06!GO:0051789;response to protein stimulus;8.3472204341375e-06!GO:0006986;response to unfolded protein;8.3472204341375e-06!GO:0005667;transcription factor complex;9.19123655230755e-06!GO:0004298;threonine endopeptidase activity;9.52138919568228e-06!GO:0043623;cellular protein complex assembly;1.16019068766634e-05!GO:0000245;spliceosome assembly;1.2387731202136e-05!GO:0000151;ubiquitin ligase complex;1.26840368966793e-05!GO:0005770;late endosome;1.33588800046964e-05!GO:0050657;nucleic acid transport;1.40085369952375e-05!GO:0051236;establishment of RNA localization;1.40085369952375e-05!GO:0050658;RNA transport;1.40085369952375e-05!GO:0006403;RNA localization;1.47143283166546e-05!GO:0032561;guanyl ribonucleotide binding;1.53404584654996e-05!GO:0019001;guanyl nucleotide binding;1.53404584654996e-05!GO:0003697;single-stranded DNA binding;1.55548221844897e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.56585029280441e-05!GO:0005905;coated pit;1.62157298303437e-05!GO:0009892;negative regulation of metabolic process;1.63647048841587e-05!GO:0051170;nuclear import;1.64742829376131e-05!GO:0006091;generation of precursor metabolites and energy;2.00845044345582e-05!GO:0045454;cell redox homeostasis;2.23822064272136e-05!GO:0006606;protein import into nucleus;2.59397500548044e-05!GO:0050789;regulation of biological process;2.67796427753784e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.73959275131328e-05!GO:0016787;hydrolase activity;2.76183522128437e-05!GO:0019843;rRNA binding;2.82668896313686e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.94244335862995e-05!GO:0006613;cotranslational protein targeting to membrane;3.09941581014575e-05!GO:0016779;nucleotidyltransferase activity;3.1794093502885e-05!GO:0051329;interphase of mitotic cell cycle;3.78958237865795e-05!GO:0051325;interphase;3.95946712723197e-05!GO:0016568;chromatin modification;4.09013577322446e-05!GO:0043566;structure-specific DNA binding;4.43116947596374e-05!GO:0000139;Golgi membrane;4.90393574276832e-05!GO:0015630;microtubule cytoskeleton;4.91221580135686e-05!GO:0000323;lytic vacuole;5.15068421028741e-05!GO:0005764;lysosome;5.15068421028741e-05!GO:0003724;RNA helicase activity;5.51542592415264e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.72513043177612e-05!GO:0016563;transcription activator activity;5.84383265034623e-05!GO:0000279;M phase;5.99202401427146e-05!GO:0040008;regulation of growth;6.25422849809525e-05!GO:0003713;transcription coactivator activity;8.06807367483462e-05!GO:0030867;rough endoplasmic reticulum membrane;8.16404006662052e-05!GO:0019867;outer membrane;8.29959429423722e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.42242879515388e-05!GO:0031968;organelle outer membrane;9.45017277108651e-05!GO:0044262;cellular carbohydrate metabolic process;9.58406626030608e-05!GO:0008654;phospholipid biosynthetic process;9.99105217882341e-05!GO:0016044;membrane organization and biogenesis;0.0001081455161151!GO:0048518;positive regulation of biological process;0.000130414141012574!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00013609661261339!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000136430262740618!GO:0051427;hormone receptor binding;0.000153611614336072!GO:0003899;DNA-directed RNA polymerase activity;0.000174885448717932!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000179242584034193!GO:0005769;early endosome;0.000197564526337932!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000205193076318984!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000208244344970656!GO:0000314;organellar small ribosomal subunit;0.000211943516430986!GO:0005763;mitochondrial small ribosomal subunit;0.000211943516430986!GO:0005741;mitochondrial outer membrane;0.000228264101670914!GO:0016859;cis-trans isomerase activity;0.000228646243535304!GO:0048468;cell development;0.000228646243535304!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00025045649706593!GO:0030133;transport vesicle;0.000253423540525799!GO:0051028;mRNA transport;0.000260583350071549!GO:0005048;signal sequence binding;0.000286876206301951!GO:0009165;nucleotide biosynthetic process;0.000295699429542804!GO:0005885;Arp2/3 protein complex;0.000300244833294649!GO:0035257;nuclear hormone receptor binding;0.000307298663329819!GO:0007243;protein kinase cascade;0.00032254003585634!GO:0043284;biopolymer biosynthetic process;0.000334674784462273!GO:0043021;ribonucleoprotein binding;0.000362319943008857!GO:0030663;COPI coated vesicle membrane;0.000368153008209173!GO:0030126;COPI vesicle coat;0.000368153008209173!GO:0006414;translational elongation;0.00038997836425369!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000432664194676786!GO:0043681;protein import into mitochondrion;0.000463277788069144!GO:0016481;negative regulation of transcription;0.000470134968068784!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000519992184829777!GO:0008250;oligosaccharyl transferase complex;0.000599811005284408!GO:0004576;oligosaccharyl transferase activity;0.000641361309501647!GO:0008186;RNA-dependent ATPase activity;0.000678479592467676!GO:0007050;cell cycle arrest;0.00068552344650108!GO:0000786;nucleosome;0.000687730861386484!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000701684255237047!GO:0005791;rough endoplasmic reticulum;0.000734347682062192!GO:0051920;peroxiredoxin activity;0.000808581039354411!GO:0030658;transport vesicle membrane;0.000865158162847167!GO:0006612;protein targeting to membrane;0.000875739300474525!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000944620937605049!GO:0015399;primary active transmembrane transporter activity;0.000944620937605049!GO:0030137;COPI-coated vesicle;0.000962615860073922!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00105556911469298!GO:0030659;cytoplasmic vesicle membrane;0.00105624851621015!GO:0006626;protein targeting to mitochondrion;0.00105983977978364!GO:0030176;integral to endoplasmic reticulum membrane;0.00106119837452732!GO:0019899;enzyme binding;0.0010688476966332!GO:0048471;perinuclear region of cytoplasm;0.0010919974819782!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00118991583794584!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00121934630053408!GO:0030027;lamellipodium;0.00122788161895523!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0013057180486555!GO:0030132;clathrin coat of coated pit;0.00131613601608026!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00131870084313016!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00139362848489001!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00139362848489001!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00139362848489001!GO:0065009;regulation of a molecular function;0.00146005202393592!GO:0018196;peptidyl-asparagine modification;0.00162730265107087!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00162730265107087!GO:0007006;mitochondrial membrane organization and biogenesis;0.00163207913604062!GO:0004004;ATP-dependent RNA helicase activity;0.00179719472754886!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00202231032860215!GO:0006082;organic acid metabolic process;0.00202577674950572!GO:0016197;endosome transport;0.00202583877246848!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00214933618336881!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00214933618336881!GO:0030308;negative regulation of cell growth;0.0021550778460466!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00224854304916921!GO:0045792;negative regulation of cell size;0.00225954979929334!GO:0019752;carboxylic acid metabolic process;0.00226752708949053!GO:0046474;glycerophospholipid biosynthetic process;0.00227187900852198!GO:0030118;clathrin coat;0.00240729358065526!GO:0004177;aminopeptidase activity;0.00246299500078711!GO:0051128;regulation of cellular component organization and biogenesis;0.00258644369638192!GO:0030880;RNA polymerase complex;0.00259214151697428!GO:0006509;membrane protein ectodomain proteolysis;0.00261398887195117!GO:0033619;membrane protein proteolysis;0.00261398887195117!GO:0051168;nuclear export;0.00274399835123034!GO:0003746;translation elongation factor activity;0.00278497862302211!GO:0001726;ruffle;0.00282558079483212!GO:0030660;Golgi-associated vesicle membrane;0.00288067223571132!GO:0048487;beta-tubulin binding;0.00291374576192074!GO:0044433;cytoplasmic vesicle part;0.00314515425813379!GO:0009967;positive regulation of signal transduction;0.00320152898899878!GO:0042802;identical protein binding;0.00321243741388076!GO:0046483;heterocycle metabolic process;0.00322351725873561!GO:0003729;mRNA binding;0.0032415998532105!GO:0031072;heat shock protein binding;0.00330775002554353!GO:0051252;regulation of RNA metabolic process;0.00333607945092461!GO:0000059;protein import into nucleus, docking;0.00357379787205573!GO:0005819;spindle;0.00359259965504404!GO:0005813;centrosome;0.0036505206835268!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00365214842385226!GO:0006839;mitochondrial transport;0.00367289279635283!GO:0016126;sterol biosynthetic process;0.00372109062315848!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00379651807093811!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00381787683236195!GO:0003779;actin binding;0.00386298248657367!GO:0008632;apoptotic program;0.00386391932094708!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00392768000882473!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00392768000882473!GO:0015002;heme-copper terminal oxidase activity;0.00392768000882473!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00392768000882473!GO:0004129;cytochrome-c oxidase activity;0.00392768000882473!GO:0006979;response to oxidative stress;0.0042758719682789!GO:0030125;clathrin vesicle coat;0.00428818130758197!GO:0030665;clathrin coated vesicle membrane;0.00428818130758197!GO:0051287;NAD binding;0.00437113356005967!GO:0000082;G1/S transition of mitotic cell cycle;0.00441521578054968!GO:0043488;regulation of mRNA stability;0.00456827717792659!GO:0043487;regulation of RNA stability;0.00456827717792659!GO:0007264;small GTPase mediated signal transduction;0.00459354376258914!GO:0048500;signal recognition particle;0.00462770517961681!GO:0022890;inorganic cation transmembrane transporter activity;0.00464738184076479!GO:0033673;negative regulation of kinase activity;0.00469427378676103!GO:0006469;negative regulation of protein kinase activity;0.00469427378676103!GO:0006897;endocytosis;0.00471353983700368!GO:0010324;membrane invagination;0.00471353983700368!GO:0017166;vinculin binding;0.00475895871047918!GO:0015631;tubulin binding;0.00483523117493114!GO:0006383;transcription from RNA polymerase III promoter;0.00485768582738441!GO:0008139;nuclear localization sequence binding;0.00492378996396198!GO:0051348;negative regulation of transferase activity;0.00500155713032002!GO:0045893;positive regulation of transcription, DNA-dependent;0.00505566075187901!GO:0031543;peptidyl-proline dioxygenase activity;0.00531334004598262!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00534477299822068!GO:0006007;glucose catabolic process;0.00537166332877337!GO:0016363;nuclear matrix;0.00541537961099327!GO:0045941;positive regulation of transcription;0.00541850401693534!GO:0030521;androgen receptor signaling pathway;0.0054374208854876!GO:0043065;positive regulation of apoptosis;0.00560714357366437!GO:0008180;signalosome;0.0056711719436785!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00570230213775279!GO:0000428;DNA-directed RNA polymerase complex;0.00570230213775279!GO:0035258;steroid hormone receptor binding;0.00576808445798233!GO:0051087;chaperone binding;0.00578760453817254!GO:0005815;microtubule organizing center;0.0059553269468197!GO:0044452;nucleolar part;0.00601688812839158!GO:0043492;ATPase activity, coupled to movement of substances;0.00612267689151511!GO:0008610;lipid biosynthetic process;0.00632618468898053!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00637524472248344!GO:0043068;positive regulation of programmed cell death;0.00645220950751629!GO:0005684;U2-dependent spliceosome;0.00662224240478812!GO:0006891;intra-Golgi vesicle-mediated transport;0.00679662006623515!GO:0007040;lysosome organization and biogenesis;0.00681540804714323!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00681857742952307!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00682942074299165!GO:0008033;tRNA processing;0.00687269169419458!GO:0006402;mRNA catabolic process;0.00711689239553027!GO:0006950;response to stress;0.00720648366377631!GO:0006595;polyamine metabolic process;0.00748172427205032!GO:0006740;NADPH regeneration;0.00749667689515759!GO:0006098;pentose-phosphate shunt;0.00749667689515759!GO:0030041;actin filament polymerization;0.00761457660642921!GO:0030134;ER to Golgi transport vesicle;0.00775614870499477!GO:0008312;7S RNA binding;0.00781129777723702!GO:0065007;biological regulation;0.0079526987244032!GO:0005869;dynactin complex;0.00800260718990653!GO:0019798;procollagen-proline dioxygenase activity;0.0080579944375397!GO:0031418;L-ascorbic acid binding;0.00813845689693681!GO:0006261;DNA-dependent DNA replication;0.00814288577772717!GO:0006417;regulation of translation;0.00837060365228976!GO:0015992;proton transport;0.00859714053664649!GO:0012506;vesicle membrane;0.00862347875248305!GO:0008283;cell proliferation;0.00875069711154697!GO:0007033;vacuole organization and biogenesis;0.0089994521854447!GO:0031901;early endosome membrane;0.00911162341585856!GO:0030127;COPII vesicle coat;0.00918263519784663!GO:0012507;ER to Golgi transport vesicle membrane;0.00918263519784663!GO:0001666;response to hypoxia;0.00928678637424919!GO:0045936;negative regulation of phosphate metabolic process;0.00982500722703167!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00991278262806183!GO:0030833;regulation of actin filament polymerization;0.00998049786527363!GO:0043433;negative regulation of transcription factor activity;0.0100594809805188!GO:0046467;membrane lipid biosynthetic process;0.0100937741860992!GO:0007051;spindle organization and biogenesis;0.0100937741860992!GO:0030119;AP-type membrane coat adaptor complex;0.0102060609646276!GO:0006818;hydrogen transport;0.0102840168144973!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0103198774249194!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0103198774249194!GO:0045047;protein targeting to ER;0.0103198774249194!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0104196542963401!GO:0006778;porphyrin metabolic process;0.0106712543472546!GO:0033013;tetrapyrrole metabolic process;0.0106712543472546!GO:0045926;negative regulation of growth;0.0110075842148493!GO:0006695;cholesterol biosynthetic process;0.0111609744738253!GO:0045045;secretory pathway;0.0111689834482965!GO:0051098;regulation of binding;0.0111689834482965!GO:0045892;negative regulation of transcription, DNA-dependent;0.0112384028866892!GO:0005856;cytoskeleton;0.0112452483009127!GO:0000049;tRNA binding;0.0113744585785231!GO:0044420;extracellular matrix part;0.0113929524584586!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0116597346762359!GO:0008637;apoptotic mitochondrial changes;0.0118264349617709!GO:0008154;actin polymerization and/or depolymerization;0.0119437255477867!GO:0006401;RNA catabolic process;0.012154607578826!GO:0005637;nuclear inner membrane;0.0122028139316049!GO:0000902;cell morphogenesis;0.0124231522856858!GO:0032989;cellular structure morphogenesis;0.0124231522856858!GO:0005862;muscle thin filament tropomyosin;0.0125796095231424!GO:0005583;fibrillar collagen;0.0129534148763962!GO:0005581;collagen;0.0130854787250132!GO:0031529;ruffle organization and biogenesis;0.0132867788196482!GO:0043022;ribosome binding;0.0135580666297783!GO:0050681;androgen receptor binding;0.0136655138580695!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0138232332880407!GO:0033043;regulation of organelle organization and biogenesis;0.0138232332880407!GO:0051059;NF-kappaB binding;0.0138236740190954!GO:0001527;microfibril;0.0143200835077986!GO:0005832;chaperonin-containing T-complex;0.0149275651445904!GO:0031902;late endosome membrane;0.0152678354883339!GO:0031301;integral to organelle membrane;0.0152678354883339!GO:0016408;C-acyltransferase activity;0.0154221500436001!GO:0008286;insulin receptor signaling pathway;0.0155540345225666!GO:0006892;post-Golgi vesicle-mediated transport;0.0156367986397971!GO:0006144;purine base metabolic process;0.0166293374898759!GO:0030131;clathrin adaptor complex;0.0167483946510116!GO:0008022;protein C-terminus binding;0.0170005609488699!GO:0051101;regulation of DNA binding;0.0170234677031442!GO:0009116;nucleoside metabolic process;0.0173004340982828!GO:0005774;vacuolar membrane;0.0173004340982828!GO:0009112;nucleobase metabolic process;0.0175033653769386!GO:0051270;regulation of cell motility;0.0177296798761237!GO:0003690;double-stranded DNA binding;0.0185263440719294!GO:0016860;intramolecular oxidoreductase activity;0.0185263440719294!GO:0006520;amino acid metabolic process;0.0185276550691964!GO:0004674;protein serine/threonine kinase activity;0.0188313862707203!GO:0008047;enzyme activator activity;0.0188313862707203!GO:0042168;heme metabolic process;0.0190395190598593!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0197173333342644!GO:0008094;DNA-dependent ATPase activity;0.0197480816891191!GO:0016272;prefoldin complex;0.0200134245755392!GO:0031124;mRNA 3'-end processing;0.0200295680765625!GO:0007167;enzyme linked receptor protein signaling pathway;0.0201900256422436!GO:0031272;regulation of pseudopodium formation;0.0201900256422436!GO:0031269;pseudopodium formation;0.0201900256422436!GO:0031344;regulation of cell projection organization and biogenesis;0.0201900256422436!GO:0031268;pseudopodium organization and biogenesis;0.0201900256422436!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0201900256422436!GO:0031274;positive regulation of pseudopodium formation;0.0201900256422436!GO:0046489;phosphoinositide biosynthetic process;0.020491344527614!GO:0006779;porphyrin biosynthetic process;0.020538987074834!GO:0033014;tetrapyrrole biosynthetic process;0.020538987074834!GO:0003711;transcription elongation regulator activity;0.0209591941310817!GO:0051539;4 iron, 4 sulfur cluster binding;0.0216301275451373!GO:0003756;protein disulfide isomerase activity;0.0221657522523716!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0221657522523716!GO:0000339;RNA cap binding;0.0228007286549102!GO:0031326;regulation of cellular biosynthetic process;0.023242920900293!GO:0019318;hexose metabolic process;0.0235173486264545!GO:0005665;DNA-directed RNA polymerase II, core complex;0.023724760887833!GO:0008064;regulation of actin polymerization and/or depolymerization;0.023724760887833!GO:0042326;negative regulation of phosphorylation;0.0239503419965276!GO:0008652;amino acid biosynthetic process;0.024115080131665!GO:0050790;regulation of catalytic activity;0.0249551045986061!GO:0030865;cortical cytoskeleton organization and biogenesis;0.025411674906125!GO:0009889;regulation of biosynthetic process;0.0256650543531868!GO:0004860;protein kinase inhibitor activity;0.0256650543531868!GO:0008147;structural constituent of bone;0.0256954142534315!GO:0000075;cell cycle checkpoint;0.0263570362516044!GO:0005520;insulin-like growth factor binding;0.0263858137208437!GO:0003684;damaged DNA binding;0.0265692990257395!GO:0005874;microtubule;0.0265692990257395!GO:0000209;protein polyubiquitination;0.0268190910157401!GO:0008629;induction of apoptosis by intracellular signals;0.0268190910157401!GO:0008243;plasminogen activator activity;0.0273869960666927!GO:0046426;negative regulation of JAK-STAT cascade;0.0274169446406743!GO:0030032;lamellipodium biogenesis;0.0280648777239383!GO:0005657;replication fork;0.0281433047194295!GO:0003682;chromatin binding;0.0281433047194295!GO:0006650;glycerophospholipid metabolic process;0.0284534208663169!GO:0000287;magnesium ion binding;0.0289094694093395!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0289591561831731!GO:0050178;phenylpyruvate tautomerase activity;0.0292227837292292!GO:0006739;NADP metabolic process;0.0296071110708757!GO:0000096;sulfur amino acid metabolic process;0.0296071110708757!GO:0005996;monosaccharide metabolic process;0.0296506897867628!GO:0022415;viral reproductive process;0.0308432345230128!GO:0008538;proteasome activator activity;0.030979933408961!GO:0050811;GABA receptor binding;0.0309878037698905!GO:0046519;sphingoid metabolic process;0.0311572210291201!GO:0035035;histone acetyltransferase binding;0.0312489379285937!GO:0030518;steroid hormone receptor signaling pathway;0.0313706700913941!GO:0031625;ubiquitin protein ligase binding;0.0315456036844688!GO:0051540;metal cluster binding;0.0333464253439602!GO:0051536;iron-sulfur cluster binding;0.0333464253439602!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0345603068449914!GO:0004784;superoxide dismutase activity;0.0345603068449914!GO:0051052;regulation of DNA metabolic process;0.0345603068449914!GO:0007021;tubulin folding;0.0345603068449914!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0347446003460082!GO:0006783;heme biosynthetic process;0.0359669633401102!GO:0006354;RNA elongation;0.0360665699700823!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0361643544991961!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0361643544991961!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.036413411095704!GO:0030508;thiol-disulfide exchange intermediate activity;0.037370247527101!GO:0006611;protein export from nucleus;0.037370247527101!GO:0032535;regulation of cellular component size;0.0379269213099341!GO:0044437;vacuolar part;0.0379327958949902!GO:0006352;transcription initiation;0.0380481084460061!GO:0030832;regulation of actin filament length;0.0386277961665364!GO:0033239;negative regulation of amine metabolic process;0.0392560042698167!GO:0045763;negative regulation of amino acid metabolic process;0.0392560042698167!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0392560042698167!GO:0005938;cell cortex;0.0394403034404487!GO:0006672;ceramide metabolic process;0.0394948410448379!GO:0033559;unsaturated fatty acid metabolic process;0.040246679559857!GO:0006636;unsaturated fatty acid biosynthetic process;0.040246679559857!GO:0008287;protein serine/threonine phosphatase complex;0.0405623512912017!GO:0006096;glycolysis;0.0405623512912017!GO:0048144;fibroblast proliferation;0.0409558772119567!GO:0048145;regulation of fibroblast proliferation;0.0409558772119567!GO:0030911;TPR domain binding;0.0413223796926047!GO:0032508;DNA duplex unwinding;0.0416157765874522!GO:0032392;DNA geometric change;0.0416157765874522!GO:0030145;manganese ion binding;0.0417720504192065!GO:0031123;RNA 3'-end processing;0.0417720504192065!GO:0046365;monosaccharide catabolic process;0.042041781169263!GO:0009303;rRNA transcription;0.0423272153261728!GO:0040011;locomotion;0.0428259435292601!GO:0016301;kinase activity;0.0437770900002476!GO:0032906;transforming growth factor-beta2 production;0.0437919555022688!GO:0032909;regulation of transforming growth factor-beta2 production;0.0437919555022688!GO:0007088;regulation of mitosis;0.0440736826092036!GO:0016584;nucleosome positioning;0.0440736826092036!GO:0031371;ubiquitin conjugating enzyme complex;0.0446374552374822!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0448070859279067!GO:0006376;mRNA splice site selection;0.0448167846352965!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0448167846352965!GO:0030433;ER-associated protein catabolic process;0.0450397807782968!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0450397807782968!GO:0030031;cell projection biogenesis;0.0452506704762858!GO:0007346;regulation of progression through mitotic cell cycle;0.0452661343643756!GO:0006302;double-strand break repair;0.0455563802844584!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0475426621855573!GO:0004287;prolyl oligopeptidase activity;0.0476890290993492!GO:0030503;regulation of cell redox homeostasis;0.04772474190927!GO:0007030;Golgi organization and biogenesis;0.048280867464856!GO:0006607;NLS-bearing substrate import into nucleus;0.0484329290673164!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0484547436686932!GO:0009893;positive regulation of metabolic process;0.0484795125310468!GO:0007034;vacuolar transport;0.0486214827001869!GO:0016251;general RNA polymerase II transcription factor activity;0.0488297575460309!GO:0006984;ER-nuclear signaling pathway;0.0488750434107751!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0495560776556765!GO:0001725;stress fiber;0.0495560776556765!GO:0032432;actin filament bundle;0.0495560776556765!GO:0003678;DNA helicase activity;0.0497835672431174!GO:0006518;peptide metabolic process;0.0498048713713566
|sample_id=11268
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=heart
|top_motifs=HOX{A5,B5}:1.7152184001;XBP1:1.48662197063;GTF2A1,2:1.4678860414;IKZF1:1.44848067223;NR3C1:1.40738796944;TEAD1:1.35090992626;HIF1A:1.30668004245;SRF:1.28165382793;GLI1..3:1.26131497575;NFE2L1:1.1300272652;ZIC1..3:1.07901975553;TBP:1.07437420906;ALX4:1.04868768607;HMX1:1.0380284994;GFI1B:1.02753633675;UFEwm:1.02176606425;TAL1_TCF{3,4,12}:0.992190517886;LHX3,4:0.960673994543;TLX1..3_NFIC{dimer}:0.937717246642;RXRA_VDR{dimer}:0.899688263545;SMAD1..7,9:0.894378066316;TFAP4:0.84397899064;HAND1,2:0.820533599703;XCPE1{core}:0.801627343876;GCM1,2:0.78169407207;EBF1:0.780326907516;ZBTB6:0.746672365649;PAX5:0.71106438162;TBX4,5:0.707257829881;ZNF148:0.704053317259;NKX3-2:0.651904582492;FOXM1:0.613430258268;MAZ:0.613259199424;MYBL2:0.609051999156;GTF2I:0.608092082793;EN1,2:0.593466983666;ONECUT1,2:0.593004049979;TP53:0.575420395183;KLF4:0.569877710874;STAT5{A,B}:0.569140295725;SOX17:0.560100811377;TFAP2B:0.559715414604;NKX3-1:0.554375484997;PATZ1:0.552729287914;PPARG:0.533536915512;ZNF238:0.528682234476;MEF2{A,B,C,D}:0.505184252756;AR:0.484352550483;EVI1:0.464364310587;RXR{A,B,G}:0.438641481018;NR5A1,2:0.435169756742;TFCP2:0.429799040433;ESR1:0.409578796733;ADNP_IRX_SIX_ZHX:0.398055806056;TOPORS:0.396094384142;MTE{core}:0.391540550025;HIC1:0.387090726768;POU3F1..4:0.382806422787;bHLH_family:0.381967459361;NKX2-1,4:0.374123872913;HES1:0.370162142645;ZNF423:0.354297919028;GFI1:0.345677273492;NR6A1:0.331388139249;ESRRA:0.319676083461;NANOG{mouse}:0.308221537639;NFIX:0.305866275174;GATA6:0.298843928497;STAT2,4,6:0.276232784459;MAFB:0.275200363326;EGR1..3:0.26848435053;REST:0.254470196212;NFE2L2:0.254015250197;ZNF384:0.222254434367;GATA4:0.216349650598;NFATC1..3:0.214971367897;SP1:0.202512811551;SPZ1:0.188254908943;TFAP2{A,C}:0.166264623586;LEF1_TCF7_TCF7L1,2:0.152033116034;HLF:0.110214596062;HOXA9_MEIS1:0.107103696645;SOX2:0.104299485816;RREB1:0.0847933618451;BACH2:0.0561670485502;PRDM1:0.0525325661929;HSF1,2:0.0337912150219;PAX8:0.0206057895084;FOS_FOS{B,L1}_JUN{B,D}:0.0190071299158;NHLH1,2:0.00593544540036;MZF1:-0.00993744796577;LMO2:-0.020086730413;ZNF143:-0.032112652036;MYFfamily:-0.0431466105905;HMGA1,2:-0.0499386420462;MTF1:-0.0628595657875;ATF6:-0.0706715856149;HNF1A:-0.0776751492289;GZF1:-0.0801542567699;POU2F1..3:-0.0983620561554;FOXL1:-0.0985689336974;PAX6:-0.110863343526;CDC5L:-0.122346357575;TFDP1:-0.127402178928;ATF2:-0.129559251795;AIRE:-0.131151354512;VSX1,2:-0.138244992343;CRX:-0.146114343565;NANOG:-0.153663332692;HNF4A_NR2F1,2:-0.160058811711;ELK1,4_GABP{A,B1}:-0.164613948396;SOX{8,9,10}:-0.168853822033;NKX2-2,8:-0.187115290797;FOSL2:-0.190718368048;TEF:-0.199712054531;EP300:-0.20451775117;E2F1..5:-0.209705022014;PAX1,9:-0.239933656135;PAX3,7:-0.247154494458;JUN:-0.247702178774;POU5F1:-0.249051887284;AHR_ARNT_ARNT2:-0.255189656529;POU1F1:-0.267285614848;HOX{A4,D4}:-0.267346799762;CEBPA,B_DDIT3:-0.274700880997;ARID5B:-0.280889594647;SNAI1..3:-0.290507460547;MYOD1:-0.299321578615;NFY{A,B,C}:-0.302416648971;PAX2:-0.32054151921;MYB:-0.333061800453;NRF1:-0.335376991057;PBX1:-0.358560879039;RUNX1..3:-0.377299250246;RFX1:-0.37980207342;NFE2:-0.383244007206;NFKB1_REL_RELA:-0.389929198332;ZFP161:-0.408541150193;YY1:-0.418719785017;SOX5:-0.422075451201;PRRX1,2:-0.429404992978;NKX6-1,2:-0.464470667891;SREBF1,2:-0.472907661767;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.479506070391;NFIL3:-0.489482768935;MED-1{core}:-0.507336459245;ALX1:-0.512252809208;PDX1:-0.524288128392;ZEB1:-0.529479540509;FOXA2:-0.540106776097;ELF1,2,4:-0.546224295096;TGIF1:-0.550961820815;ETS1,2:-0.55564749741;IRF1,2:-0.564675255004;NR1H4:-0.609079599559;CUX2:-0.61291424777;TLX2:-0.617329554968;NKX2-3_NKX2-5:-0.625752378756;HBP1_HMGB_SSRP1_UBTF:-0.653942843861;SPIB:-0.656254693953;ATF4:-0.656520947208;OCT4_SOX2{dimer}:-0.658745164708;BPTF:-0.675630537039;RORA:-0.682007791759;SPI1:-0.695436917266;DBP:-0.720512794444;CDX1,2,4:-0.731512869526;ATF5_CREB3:-0.735960261604;FOX{D1,D2}:-0.768454383396;BREu{core}:-0.77439329525;FOX{F1,F2,J1}:-0.821648156933;POU6F1:-0.826489139515;IRF7:-0.855928003798;FOXQ1:-0.876556869786;FOXP3:-0.903804096167;FOXO1,3,4:-0.943340089679;FOX{I1,J2}:-0.979298326931;IKZF2:-0.986188668853;CREB1:-1.01659363897;HOX{A6,A7,B6,B7}:-1.06916758417;STAT1,3:-1.07174538847;DMAP1_NCOR{1,2}_SMARC:-1.16169862589;FOXP1:-1.19157882274;T:-1.22563209356;PAX4:-1.24731738362;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.29517131638;RBPJ:-1.3734445448;PITX1..3:-1.3915867758;ZBTB16:-1.42728170112;FOXN1:-1.47042411851;RFX2..5_RFXANK_RFXAP:-1.59530913331;FOXD3:-1.69593013024
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11268-116G8;search_select_hide=table117:FF:11268-116G8
}}
}}

Latest revision as of 16:29, 3 June 2020

Name:Fibroblast - Cardiac, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12498
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage22 weeks old fetus
sexmale
ageembryo 22week
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1592
catalog numberCA306-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005836
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12498 CAGE DRX008243 DRR009115
Accession ID Hg19

Library idBAMCTSS
CNhs12498 DRZ000540 DRZ001925
Accession ID Hg38

Library idBAMCTSS
CNhs12498 DRZ011890 DRZ013275
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005836
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.TGACCA sRNA-Seq DRX037205 DRR041571
Accession ID Hg19

Library idBAMCTSS
SRhi10013.TGACCA DRZ007213


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.327
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00599
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.18
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.231
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.327
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.297
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.352
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.193
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.193
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.286
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.193
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0196
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0979
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.116
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.511
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.327
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.511
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.511
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.554
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.64
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12498

Jaspar motifP-value
MA0002.20.128
MA0003.10.484
MA0004.10.498
MA0006.10.116
MA0007.10.42
MA0009.10.232
MA0014.10.402
MA0017.10.904
MA0018.25.37713e-5
MA0019.10.262
MA0024.10.0178
MA0025.10.0634
MA0027.10.475
MA0028.10.00897
MA0029.10.0355
MA0030.10.354
MA0031.10.0202
MA0035.20.414
MA0038.10.353
MA0039.20.933
MA0040.10.808
MA0041.10.339
MA0042.10.632
MA0043.13.45333e-5
MA0046.10.278
MA0047.20.297
MA0048.10.626
MA0050.11.07886e-6
MA0051.10.00499
MA0052.10.482
MA0055.10.831
MA0057.10.112
MA0058.10.175
MA0059.10.811
MA0060.10.118
MA0061.10.0361
MA0062.21.26894e-7
MA0065.20.446
MA0066.10.63
MA0067.10.0137
MA0068.10.854
MA0069.10.619
MA0070.10.816
MA0071.10.649
MA0072.10.396
MA0073.10.871
MA0074.10.577
MA0076.12.94022e-4
MA0077.10.837
MA0078.10.266
MA0079.20.348
MA0080.22.00488e-9
MA0081.16.63092e-4
MA0083.13.2595e-5
MA0084.10.777
MA0087.10.922
MA0088.10.593
MA0090.13.63992e-5
MA0091.10.0433
MA0092.10.169
MA0093.10.456
MA0099.20.427
MA0100.10.0454
MA0101.10.0184
MA0102.20.0171
MA0103.10.264
MA0104.20.115
MA0105.10.0839
MA0106.10.161
MA0107.10.0148
MA0108.24.78383e-11
MA0111.10.261
MA0112.20.148
MA0113.10.592
MA0114.10.298
MA0115.10.0302
MA0116.10.702
MA0117.10.325
MA0119.10.167
MA0122.10.973
MA0124.10.0843
MA0125.10.41
MA0131.10.155
MA0135.10.211
MA0136.15.47247e-9
MA0137.20.447
MA0138.20.467
MA0139.10.979
MA0140.10.429
MA0141.10.472
MA0142.10.857
MA0143.10.916
MA0144.10.757
MA0145.10.215
MA0146.10.748
MA0147.10.264
MA0148.10.444
MA0149.10.961
MA0150.10.11
MA0152.10.214
MA0153.10.272
MA0154.10.634
MA0155.10.196
MA0156.15.89231e-7
MA0157.10.0701
MA0159.10.57
MA0160.10.271
MA0162.10.0533
MA0163.10.9
MA0164.10.881
MA0258.10.579
MA0259.10.903



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12498

Novel motifP-value
10.586
100.0411
1000.861
1010.077
1020.703
1030.448
1040.642
1050.735
1060.318
1070.0356
1080.224
1090.675
110.595
1100.672
1110.148
1120.681
1130.271
1140.948
1150.0218
1160.0413
1170.12
1180.881
1190.801
120.73
1200.372
1210.951
1220.654
1236.13859e-4
1240.242
1250.317
1260.446
1270.938
1280.271
1290.317
130.771
1300.678
1310.249
1320.385
1330.609
1340.665
1350.474
1360.892
1370.00978
1380.167
1390.542
140.356
1400.989
1410.563
1420.707
1430.552
1440.912
1450.533
1460.341
1470.211
1480.0804
1490.0191
150.735
1500.248
1510.973
1520.0655
1530.643
1540.207
1550.162
1560.35
1570.135
1580.0117
1590.847
160.0711
1600.0316
1610.425
1620.787
1630.989
1640.565
1650.353
1660.158
1670.371
1680.985
1690.0631
170.544
180.55
190.0298
20.158
200.301
210.777
220.275
230.434
240.734
250.317
260.593
270.501
280.0959
290.891
30.652
300.127
310.231
321.33199e-11
330.604
340.379
350.537
360.0576
370.996
380.705
390.251
40.843
400.923
410.8
420.479
430.922
440.229
450.516
460.718
470.906
480.791
490.721
50.75
500.901
510.893
520.402
530.138
540.81
550.829
560.983
570.954
580.157
590.0833
60.599
600.989
610.639
620.442
630.594
640.995
650.471
660.663
670.619
680.716
690.12
70.515
700.721
710.651
720.891
730.0437
740.662
750.579
760.152
770.0123
780.374
790.0105
80.184
800.584
810.799
820.375
830.598
840.586
850.271
860.791
870.109
880.324
890.0547
90.645
900.00869
910.642
920.976
930.511
940.923
950.896
960.706
970.714
980.774
990.00748



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12498


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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