FFCP PHASE1:Mm9::chr5:70310332..70310338,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr5:70310332..70310338,+ to FFCP PHASE1:Mm9::chr5:70310332..70310338,+: NSchange) |
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(6 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=370 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000122630_5end | |||
|cluster_id=chr5:70310332..70310338,+ | |||
|description=CAGE_peak_1_at_ENSMUST00000122630_5end | |||
|id=chr5:70310332..70310338,+ | |||
|ontology_enrichment_celltype=CL:0000723!1.53e-18!91;CL:0000048!1.53e-18!91;CL:0002319!1.23e-17!43;CL:0000034!2.22e-17!97;CL:0000548!3.04e-17!115;CL:0000004!3.04e-17!115;CL:0000255!3.04e-17!115;CL:0000055!4.21e-17!50;CL:0000221!1.80e-16!44;CL:0000133!1.80e-16!44;CL:0000540!6.80e-16!33;CL:0000047!6.80e-16!33;CL:0000031!6.80e-16!33;CL:0000404!6.80e-16!33;CL:0002371!2.64e-15!118;CL:0000393!9.99e-15!39;CL:0000211!9.99e-15!39;CL:0000144!5.48e-14!121;CL:0000012!5.48e-14!121;CL:0000117!7.78e-14!23;CL:0000337!7.78e-14!23;CL:0002321!1.73e-11!70;CL:0000220!1.73e-11!70;CL:0000219!1.76e-09!54;CL:0002320!5.05e-08!46;CL:0000134!5.05e-08!46;CL:0000839!5.62e-07!13;CL:0002031!8.16e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,2.79e-27,91;CL:0000048,2.79e-27,91;CL:0000034,9.43e-26,97;CL:0002319,1.88e-23,43;CL:0000221,1.54e-22,44;CL:0000133,1.54e-22,44;CL:0000540,2.36e-21,33;CL:0000047,2.36e-21,33;CL:0000031,2.36e-21,33;CL:0000404,2.36e-21,33;CL:0000393,6.28e-20,39;CL:0000211,6.28e-20,39;CL:0002321,1.83e-18,70;CL:0000117,2.11e-18,23;CL:0000337,2.11e-18,23;CL:0000219,1.81e-12,54;CL:0002320,1.19e-10,46;CL:0000134,1.19e-10,46;CL:0002031,3.38e-09,25;CL:0000839,5.34e-09,13;CL:0000050,3.35e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.36e-16!73;UBERON:0005743!6.36e-16!73;UBERON:0000073!2.97e-15!75;UBERON:0001016!2.97e-15!75;UBERON:0002020!5.17e-13!34;UBERON:0002791!1.09e-10!29;UBERON:0003528!1.09e-10!29;UBERON:0001893!1.09e-10!29;UBERON:0000956!2.56e-09!21;UBERON:0001869!2.56e-09!21;UBERON:0000203!2.56e-09!21;UBERON:0001049!1.11e-08!52;UBERON:0005068!1.11e-08!52;UBERON:0006241!1.11e-08!52;UBERON:0007135!1.11e-08!52;UBERON:0000955!1.48e-08!50;UBERON:0006238!1.48e-08!50;UBERON:0002616!2.12e-08!49;UBERON:0002619!2.43e-08!17;UBERON:0007811!4.70e-08!86;UBERON:0004121!4.81e-08!102;UBERON:0000924!4.81e-08!102;UBERON:0006601!4.81e-08!102;UBERON:0002384!5.05e-08!46;UBERON:0002780!1.18e-07!39;UBERON:0001890!1.18e-07!39;UBERON:0006240!1.18e-07!39;UBERON:0003080!2.21e-07!40;UBERON:0000153!2.70e-07!94;UBERON:0002346!3.49e-07!71;UBERON:0003075!3.49e-07!71;UBERON:0007284!3.49e-07!71;UBERON:0002021!7.46e-07!10;UBERON:0000411!7.46e-07!10;UBERON:0001950!7.46e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.15e-19,73;UBERON:0001016,7.78e-18,75;UBERON:0002020,5.20e-17,34;UBERON:0003528,7.88e-14,29;UBERON:0002791,7.88e-14,29;UBERON:0001893,7.88e-14,29;UBERON:0004121,4.84e-12,95;UBERON:0000924,4.84e-12,95;UBERON:0006601,4.84e-12,95;UBERON:0000073,1.40e-11,54;UBERON:0000956,5.01e-11,21;UBERON:0001869,5.01e-11,21;UBERON:0000203,5.01e-11,21;UBERON:0002384,1.19e-10,46;UBERON:0002619,1.28e-09,17;UBERON:0001049,2.32e-09,52;UBERON:0005068,2.32e-09,52;UBERON:0006241,2.32e-09,52;UBERON:0007135,2.32e-09,52;UBERON:0002021,7.86e-09,10;UBERON:0000411,7.86e-09,10;UBERON:0001950,7.86e-09,10;UBERON:0002346,1.83e-08,64;UBERON:0003075,1.83e-08,64;UBERON:0007284,1.83e-08,64;UBERON:0002780,2.00e-08,39;UBERON:0001890,2.00e-08,39;UBERON:0006240,2.00e-08,39;UBERON:0003080,5.44e-08,40;UBERON:0000955,1.55e-07,47;UBERON:0006238,1.55e-07,47;UBERON:0002616,2.45e-07,46 | |||
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| ||
|short_description=p1@ENSMUST00000122630 | |||
}} | }} |
Latest revision as of 13:51, 4 August 2015
Short description: | p1@ENSMUST00000122630 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000122630_5end |
Coexpression cluster: | MCL_coexpression_mm9:370 |
Association with transcript: | 0bp_to_ENSMUST00000122630_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 2.79e-27 | 91 |
multi fate stem cell | 2.79e-27 | 91 |
stem cell | 9.43e-26 | 97 |
neural cell | 1.88e-23 | 43 |
ectodermal cell | 1.54e-22 | 44 |
neurectodermal cell | 1.54e-22 | 44 |
neuron | 2.36e-21 | 33 |
neuronal stem cell | 2.36e-21 | 33 |
neuroblast | 2.36e-21 | 33 |
electrically signaling cell | 2.36e-21 | 33 |
electrically responsive cell | 6.28e-20 | 39 |
electrically active cell | 6.28e-20 | 39 |
embryonic cell | 1.83e-18 | 70 |
CNS neuron (sensu Vertebrata) | 2.11e-18 | 23 |
neuroblast (sensu Vertebrata) | 2.11e-18 | 23 |
motile cell | 1.81e-12 | 54 |
connective tissue cell | 1.19e-10 | 46 |
mesenchymal cell | 1.19e-10 | 46 |
hematopoietic lineage restricted progenitor cell | 3.38e-09 | 25 |
myeloid lineage restricted progenitor cell | 5.34e-09 | 13 |
megakaryocyte-erythroid progenitor cell | 3.35e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.15e-19 | 73 |
nervous system | 7.78e-18 | 75 |
gray matter | 5.20e-17 | 34 |
brain grey matter | 7.88e-14 | 29 |
regional part of telencephalon | 7.88e-14 | 29 |
telencephalon | 7.88e-14 | 29 |
ectoderm-derived structure | 4.84e-12 | 95 |
ectoderm | 4.84e-12 | 95 |
presumptive ectoderm | 4.84e-12 | 95 |
regional part of nervous system | 1.40e-11 | 54 |
cerebral cortex | 5.01e-11 | 21 |
cerebral hemisphere | 5.01e-11 | 21 |
pallium | 5.01e-11 | 21 |
connective tissue | 1.19e-10 | 46 |
regional part of cerebral cortex | 1.28e-09 | 17 |
neural tube | 2.32e-09 | 52 |
neural rod | 2.32e-09 | 52 |
future spinal cord | 2.32e-09 | 52 |
neural keel | 2.32e-09 | 52 |
occipital lobe | 7.86e-09 | 10 |
visual cortex | 7.86e-09 | 10 |
neocortex | 7.86e-09 | 10 |
neurectoderm | 1.83e-08 | 64 |
neural plate | 1.83e-08 | 64 |
presumptive neural plate | 1.83e-08 | 64 |
regional part of forebrain | 2.00e-08 | 39 |
forebrain | 2.00e-08 | 39 |
future forebrain | 2.00e-08 | 39 |
anterior neural tube | 5.44e-08 | 40 |
brain | 1.55e-07 | 47 |
future brain | 1.55e-07 | 47 |
regional part of brain | 2.45e-07 | 46 |