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{{f5samples
{{f5samples
|id=FF:10415-106C1
|DRA_sample_Accession=CAGE@SAMD00005593
|name=gall bladder carcinoma cell line:TGBC2TKB
|accession_numbers=CAGE;DRX007889;DRR008761;DRZ000186;DRZ001571;DRZ011536;DRZ012921
|sample_id=10415
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002110,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0002294,UBERON:0001173,UBERON:0000916,UBERON:0002423
|rna_tube_id=106C1
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000415
|rna_box=106
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
|rna_position=C1
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1130
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.11!126.89!EHF;;chr11:34645791..34645836,+!p3@EHF!1.76!56.59!EHF;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.65!43.69!SOHLH2;;chr6:10415276..10415341,-!p2@TFAP2A!1.54!40.72!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.34!FOXQ1;;chr7:27153454..27153469,-!p2@HOXA3!1.44!26.61!HOXA3;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!38.56!TFAP2A;;chr7:26191809..26191890,+!p1@NFE2L3!1.38!109.34!NFE2L3;;chr1:201979743..201979762,+!p1@ELF3!1.34!21.08!ELF3;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!100.52!CREB3L1;;chr8:72756063..72756125,-!p1@MSC!1.28!36.47!MSC;;chr8:55370487..55370503,+!p1@SOX17!1.27!17.55!SOX17;;chr6:45390025..45390076,+!p2@RUNX2!1.25!40.32!RUNX2;;chr6:45390300..45390335,+!p4@RUNX2!1.25!26.05!RUNX2;;chr8:72755987..72756002,-!p7@MSC!1.25!16.83!MSC;;chr6:10412392..10412409,-!p4@TFAP2A!1.21!17.47!TFAP2A;;chr7:28448965..28448994,+!p2@CREB5!1.20!51.78!CREB5;;chr17:46682321..46682362,-!p1@HOXB6!1.20!14.67!HOXB6;;chr12:66218598..66218645,+!p2@HMGA2!1.17!63.97!HMGA2;;chr8:72756637..72756664,-!p3@MSC!1.16!15.31!MSC;;chr6:45390077..45390105,+!p9@RUNX2!1.15!16.67!RUNX2;;chr11:34642656..34642667,+!p2@EHF!1.14!12.67!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.13!12.42!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.11!13.23!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.04!26.85!HMGA2;;chr17:46703687..46703740,-!p1@HOXB9!1.04!10.02!HOXB9;;chr6:45390343..45390388,+!p10@RUNX2!1.02!12.99!RUNX2;;chr18:55102598..55102623,+!p1@ONECUT2!1.02!9.54!ONECUT2;;chr18:55102628..55102646,+!p2@ONECUT2!1.02!9.46!ONECUT2;;chr14:38064429..38064486,-!p1@FOXA1!1.02!9.38!FOXA1;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.22!TFAP2A;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.23!FOXD1;;chr6:45390269..45390298,+!p5@RUNX2!1.00!14.99!RUNX2;;chr6:45390002..45390023,+!p6@RUNX2!0.99!15.23!RUNX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!76.87!PPP1R13L;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.77!ARNTL2;;chr14:62162285..62162296,+!p3@HIF1A!0.96!43.21!HIF1A;;chr7:115670804..115670825,-!p1@TFEC!0.96!8.18!TFEC;;chr8:72756023..72756055,-!p6@MSC!0.94!9.78!MSC;;chr8:72756667..72756736,-!p2@MSC!0.93!11.86!MSC;;chr11:65667884..65667895,-!p2@FOSL1!0.92!29.58!FOSL1;;chr11:61520075..61520136,+!p1@C11orf9!0.92!16.11!C11orf9;;chr6:10412576..10412599,-!p5@TFAP2A!0.92!7.37!TFAP2A;;chr14:62162258..62162269,+!p2@HIF1A!0.91!71.58!HIF1A;;chr7:17338324..17338341,+!p3@AHR!0.91!24.85!AHR;;chr17:46688334..46688385,-!p1@HOXB7!0.91!10.50!HOXB7;;chr3:114343768..114343822,-!p1@ZBTB20!0.90!31.66!ZBTB20;;chr19:45971246..45971265,+!p1@FOSB!0.88!129.06!FOSB;;chr5:134369905..134369972,-!p1@PITX1!0.88!10.34!PITX1;;chr6:34204921..34204939,+!p3@HMGA1!0.86!197.99!HMGA1;;chr7:17338266..17338282,+!p1@AHR!0.86!70.86!AHR;;chr19:45252008..45252024,+!p2@BCL3!0.85!21.32!BCL3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.85!6.01!ZBED1;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.14!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.83!8.74!MSC;;chr3:25469724..25469773,+!p1@RARB!0.83!8.50!RARB;;chr11:65667846..65667868,-!p1@FOSL1!0.82!160.48!FOSL1;;chr6:45390137..45390148,+!p12@RUNX2!0.82!5.61!RUNX2;;chr17:70117153..70117174,+!p1@SOX9!0.81!60.12!SOX9;;chr9:16705069..16705086,-!p3@BNC2!0.81!5.53!BNC2;;chr1:6479968..6479986,-!p1@HES2!0.81!5.53!HES2;;chr13:73633131..73633149,+!p1@KLF5!0.80!61.72!KLF5;;chr12:26277956..26277980,-!p1@BHLHE41!0.80!20.68!BHLHE41;;chr6:45390399..45390418,+!p15@RUNX2!0.80!5.29!RUNX2;;chr18:19749541..19749557,+!p1@GATA6!0.79!17.31!GATA6;;chr1:158979872..158979898,+!p3@IFI16!0.79!16.91!IFI16;;chr19:53636125..53636178,-!p1@ZNF415!0.79!15.79!ZNF415;;chr3:21792631..21792665,-!p3@ZNF385D!0.79!5.13!ZNF385D;;chr3:32023232..32023273,+!p1@ZNF860!0.78!7.45!ZNF860;;chr7:27153428..27153440,-!p3@HOXA3!0.78!5.05!HOXA3;;chr9:22447422..22447483,+!p1@DMRTA1!0.78!5.05!DMRTA1;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.58!CREB3L1;;chr6:10413188..10413249,-!p7@TFAP2A!0.77!4.89!TFAP2A;;chr5:321810..321877,+!p1@AHRR!0.76!16.51!AHRR;;chr1:44513995..44514031,+!p1@KLF17!0.76!4.81!KLF17;;chr8:102504651..102504683,+!p1@GRHL2!0.76!4.73!GRHL2;;chr20:48599506..48599526,+!p1@SNAI1!0.75!32.70!SNAI1;;chr19:53496768..53496799,-!p1@ZNF702P!0.75!7.53!ZNF702P;;chr12:66218212..66218244,+!p5@HMGA2!0.75!7.05!HMGA2;;chr12:26277817..26277863,-!p2@BHLHE41!0.75!6.49!BHLHE41;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.74!47.37!ZNF595;;chr7:28725740..28725778,+!p1@CREB5!0.74!45.13!CREB5;;chr12:80084167..80084197,-!p5@PAWR!0.74!11.46!PAWR;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.69!TBX18;;chr1:40105299..40105326,-!p1@HEYL!0.74!4.49!HEYL;;chr5:72744594..72744609,-!p1@FOXD1!0.73!22.36!FOXD1;;chr7:101917407..101917443,+!p3@CUX1!0.73!4.33!CUX1;;chr3:25469815..25469866,+!p3@RARB!0.73!4.33!RARB;;chr6:15246200..15246214,+!p2@JARID2!0.72!12.75!JARID2;;chr6:45390442..45390479,+!p8@RUNX2!0.72!6.81!RUNX2;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.73!ETV4;;chr19:53289995..53290050,-!p1@ZNF600!0.71!18.84!ZNF600;;chr12:66218183..66218209,+!p4@HMGA2!0.71!8.58!HMGA2;;chr2:10091815..10091864,+!p1@GRHL1!0.71!5.69!GRHL1;;chr17:46703942..46703964,-!p4@HOXB9!0.71!4.17!HOXB9;;chr3:21792682..21792720,-!p1@ZNF385D!0.71!4.09!ZNF385D;;chr2:46524897..46524911,+!p2@EPAS1!0.70!12.50!EPAS1;;chr3:114343826..114343869,-!p4@ZBTB20!0.70!8.74!ZBTB20;;chr18:19749517..19749531,+!p3@GATA6!0.70!7.62!GATA6;;chr8:67525443..67525459,-!p2@MYBL1!0.70!6.25!MYBL1;;chr5:72743793..72743855,-!p4@FOXD1!0.70!4.89!FOXD1;;chrX:89176902..89176913,+!p1@TGIF2LX!0.70!4.01!TGIF2LX;;chr2:176969228..176969260,+!p1@HOXD11!0.70!4.01!HOXD11;;chr10:51572408..51572454,+!p3@NCOA4!0.69!25.73!NCOA4;;chr11:46299186..46299195,+!p3@CREB3L1!0.69!4.41!CREB3L1;;chr3:21792585..21792625,-!p2@ZNF385D!0.69!4.41!ZNF385D;;chr6:34524025..34524045,-!p3@SPDEF!0.69!3.93!SPDEF;;chr8:49833978..49833996,-!p1@SNAI2!0.68!90.02!SNAI2;;chr5:43120995..43121052,+!p1@ZNF131!0.68!22.12!ZNF131;;chr2:200323414..200323455,-!p1@SATB2!0.68!8.82!SATB2;;chr12:85673977..85674015,+!p1@ALX1!0.68!3.77!ALX1;;chr8:49833948..49833973,-!p2@SNAI2!0.67!27.01!SNAI2;;chr6:34204672..34204692,+!p1@HMGA1!0.66!470.69!HMGA1;;chr3:148804275..148804346,-!p1@HLTF!0.66!137.31!HLTF;;chr19:53496806..53496848,-!p2@ZNF702P!0.66!5.77!ZNF702P;;chr7:28448995..28449011,+!p4@CREB5!0.66!5.37!CREB5;;chr6:34524049..34524089,-!p2@SPDEF!0.66!3.61!SPDEF;;chr1:37940170..37940190,+!p1@ZC3H12A!0.65!49.78!ZC3H12A;;chr1:151032860..151032918,+!p1@MLLT11!0.65!47.69!MLLT11;;chr17:56065729..56065781,-!p2@VEZF1!0.65!17.23!VEZF1;;chr18:19749386..19749404,+!p2@GATA6!0.65!5.21!GATA6;;chr17:45928443..45928473,-!p2@SP6!0.65!3.45!SP6;;chr12:80084737..80084763,-!p3@PAWR!0.64!14.35!PAWR;;chr20:48807779..48807802,+!p10@CEBPB!0.64!6.01!CEBPB;;chr19:45909594..45909625,-!p2@PPP1R13L!0.63!17.31!PPP1R13L;;chr6:12008986..12009016,+!p3@HIVEP1!0.63!11.70!HIVEP1;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.05!SATB2;;chr11:65554528..65554546,+!p1@OVOL1!0.63!3.29!OVOL1;;chr21:38071403..38071428,+!p2@SIM2!0.63!3.29!SIM2;;chr3:141087339..141087387,+!p2@ZBTB38!0.62!38.88!ZBTB38;;chr17:41623009..41623053,-!p4@ETV4!0.62!5.61!ETV4;;chr8:72756213..72756243,-!p5@MSC!0.62!4.33!MSC;;chr3:18486354..18486377,-!p2@SATB1!0.62!4.17!SATB1;;chrX:30327504..30327509,-!p1@NR0B1!0.62!3.13!NR0B1;;chr12:54694758..54694805,-!p1@NFE2!0.61!3.85!NFE2;;chr13:100623375..100623425,-!p1@ZIC5!0.61!3.05!ZIC5;;chr7:101459230..101459243,+!p2@CUX1!0.60!17.31!CUX1;;chr3:150126759..150126784,+!p2@TSC22D2!0.60!15.95!TSC22D2;;chr6:126240380..126240430,+!p2@NCOA7!0.60!8.98!NCOA7;;chr15:67418119..67418162,+!p5@SMAD3!0.60!3.37!SMAD3;;chr17:8027418..8027432,-!p1@HES7!0.60!2.97!HES7;;chr6:10412477..10412490,-!p10@TFAP2A!0.60!2.97!TFAP2A;;chr17:17740287..17740307,-!p1@SREBF1!0.59!93.14!SREBF1;;chr12:27485785..27485816,+!p1@ARNTL2!0.59!24.05!ARNTL2;;chr2:60780753..60780800,-!p1@BCL11A!0.59!17.15!BCL11A;;chr5:34929947..34930005,+!p3@DNAJC21!0.59!9.54!DNAJC21;;chr18:56530692..56530723,+!p2@ZNF532!0.59!7.70!ZNF532;;chr1:158979851..158979865,+!p5@IFI16!0.59!7.21!IFI16;;chr11:85376097..85376108,-!p2@CREBZF!0.59!6.01!CREBZF;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.59!5.29!MEIS3P1;;chr12:26278008..26278024,-!p4@BHLHE41!0.59!3.61!BHLHE41;;chr19:53193790..53193821,-!p3@ZNF83!0.58!9.94!ZNF83;;chr3:107241882..107241904,+!p2@BBX!0.58!8.02!BBX;;chr12:66218152..66218174,+!p10@HMGA2!0.58!3.05!HMGA2;;chr19:22193731..22193751,-!p1@ZNF208!0.58!2.81!ZNF208;;chr7:17338239..17338262,+!p2@AHR!0.57!24.53!AHR;;chr3:129158854..129158883,-!p3@MBD4!0.57!16.51!MBD4;;chr17:41623692..41623715,-!p1@ETV4!0.57!13.95!ETV4;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.57!6.81!SOHLH2;;chr3:5021268..5021282,+!p4@BHLHE40!0.57!6.33!BHLHE40;;chr3:107244229..107244254,+!p3@BBX!0.57!4.97!BBX;;chr21:36260295..36260310,-!p3@RUNX1!0.57!4.81!RUNX1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.57!2.73!TFCP2L1;;chr2:63277948..63277974,+!p1@OTX1!0.57!2.73!OTX1;;chr18:55102806..55102847,+!p3@ONECUT2!0.57!2.73!ONECUT2;;chr8:81787006..81787031,-!p2@ZNF704!0.57!2.73!ZNF704;;chr14:62162224..62162254,+!p1@HIF1A!0.56!485.52!HIF1A;;chr12:77459306..77459365,-!p1@E2F7!0.56!41.44!E2F7;;chr12:80084303..80084332,-!p1@PAWR!0.56!19.00!PAWR;;chr14:75988771..75988826,+!p1@BATF!0.56!3.77!BATF;;chr17:46622229..46622257,-!p6@HOXB2!0.56!3.21!HOXB2;;chr15:90294062..90294079,-!p2@MESP1!0.56!2.65!MESP1;;chr9:115819058..115819082,-!p2@ZFP37!0.56!2.65!ZFP37;;chr13:28543285..28543314,-!p2@CDX2!0.56!2.65!CDX2;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.55!21.72!ZNF410;;chr19:44952635..44952668,-!p1@ZNF229!0.55!15.47!ZNF229;;chr5:133450365..133450444,+!p1@TCF7!0.55!14.11!TCF7;;chrX:129402768..129402796,-!p2@ZNF280C!0.55!9.38!ZNF280C;;chr12:80084137..80084165,-!p10@PAWR!0.55!3.53!PAWR;;chr17:38020392..38020477,-!p1@IKZF3!0.55!2.57!IKZF3;;chr4:149363494..149363543,-!p1@NR3C2!0.55!2.57!NR3C2;;chr6:34210478..34210481,+!p8@HMGA1!0.55!2.57!HMGA1;;chr6:15246261..15246312,+!p1@JARID2!0.54!76.95!JARID2;;chr22:42229246..42229270,+!p2@SREBF2!0.54!39.28!SREBF2;;chr12:27485823..27485868,+!p2@ARNTL2!0.54!12.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|sample_dev_stage=
|sample_tissue=gall bladder
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=unknown
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.43
|rna_od260/280=2.09
|sample_cell_type=unclassifiable
|sample_cell_line=TGBC2TKB
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=gall bladder carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=38.08725
|rna_concentration=1.52349
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10733,LSID691,release008,COMPLETED
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|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000119,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001007,UBERON:0001041,UBERON:0001062,UBERON:0001173,UBERON:0001555,UBERON:0002050,UBERON:0002075,UBERON:0002100,UBERON:0002110,UBERON:0002294,UBERON:0002323,UBERON:0002417,UBERON:0002423,UBERON:0002532,UBERON:0002553,UBERON:0003104,UBERON:0003914,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004458,UBERON:0004912,UBERON:0004921,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0005911,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4
|sample_description=
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 66: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|is_a=CL:1000415;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100297
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg38.nobarcode.ctss.bed.gz
|id=FF:10415-106C1
|is_a=CL:1000415;;EFO:0002091;;FF:0000210;;FF:0100297
|is_obsolete=
|library_id=CNhs10733
|library_id_phase_based=2:CNhs10733
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10415
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10415
|name=gall bladder carcinoma cell line:TGBC2TKB
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
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|profile_hcage=CNhs10733,LSID691,release008,COMPLETED
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_catalog_number=
|rna_concentration=1.52349
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.43
|rna_od260/280=2.09
|rna_position=C1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=106C1
|rna_weight_ug=38.08725
|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=RCB1130
|sample_cell_line=TGBC2TKB
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=gall bladder carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.10971134052274e-228!GO:0005737;cytoplasm;2.57885775165427e-186!GO:0043226;organelle;8.16836043018378e-179!GO:0043229;intracellular organelle;2.2822862127184e-178!GO:0043231;intracellular membrane-bound organelle;3.55208882239396e-177!GO:0043227;membrane-bound organelle;5.53898032030429e-177!GO:0044422;organelle part;3.00613395235135e-136!GO:0044446;intracellular organelle part;1.54071634273751e-134!GO:0044444;cytoplasmic part;2.02854253029451e-129!GO:0032991;macromolecular complex;6.75887054667967e-85!GO:0044238;primary metabolic process;1.02045472198206e-80!GO:0044237;cellular metabolic process;5.4403153518221e-80!GO:0005515;protein binding;1.23077527994053e-76!GO:0030529;ribonucleoprotein complex;2.44008344380383e-76!GO:0043170;macromolecule metabolic process;2.73065897641099e-74!GO:0044428;nuclear part;1.60341280544974e-70!GO:0043233;organelle lumen;3.16184555726722e-69!GO:0031974;membrane-enclosed lumen;3.16184555726722e-69!GO:0005634;nucleus;1.20912326436936e-65!GO:0003723;RNA binding;8.14896045177389e-62!GO:0031090;organelle membrane;1.45203563481403e-53!GO:0005739;mitochondrion;1.99615040976771e-52!GO:0016043;cellular component organization and biogenesis;4.32228047924895e-50!GO:0019538;protein metabolic process;9.56539633422193e-49!GO:0033036;macromolecule localization;2.04780419339545e-48!GO:0015031;protein transport;3.27212749750622e-47!GO:0006396;RNA processing;5.8849347655269e-47!GO:0008104;protein localization;9.44302420042879e-45!GO:0045184;establishment of protein localization;1.55543782781316e-44!GO:0006412;translation;2.57245655668614e-44!GO:0005840;ribosome;1.44784744524665e-43!GO:0044267;cellular protein metabolic process;7.52173854593811e-43!GO:0044260;cellular macromolecule metabolic process;9.29081916758759e-43!GO:0031981;nuclear lumen;5.90706582336061e-42!GO:0043234;protein complex;1.08205766196835e-41!GO:0043283;biopolymer metabolic process;9.8250210470556e-41!GO:0005829;cytosol;5.23849446352951e-40!GO:0003735;structural constituent of ribosome;1.02573264703048e-37!GO:0016071;mRNA metabolic process;6.62192608621403e-37!GO:0009058;biosynthetic process;1.10263233424521e-36!GO:0010467;gene expression;1.788643951888e-36!GO:0046907;intracellular transport;4.49294709756159e-36!GO:0008380;RNA splicing;2.40301822352289e-35!GO:0044429;mitochondrial part;3.04855816748218e-35!GO:0031967;organelle envelope;4.85747371568348e-35!GO:0031975;envelope;6.89597926877449e-35!GO:0009059;macromolecule biosynthetic process;9.79379063053137e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.32895504338465e-33!GO:0044249;cellular biosynthetic process;5.57678816689714e-33!GO:0006397;mRNA processing;3.52760572610947e-32!GO:0006886;intracellular protein transport;1.02515329314606e-31!GO:0033279;ribosomal subunit;1.31205043124076e-31!GO:0006996;organelle organization and biogenesis;2.68655518975204e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.95418593964126e-29!GO:0065003;macromolecular complex assembly;9.72846858922409e-29!GO:0012505;endomembrane system;3.97131533978802e-27!GO:0043228;non-membrane-bound organelle;4.1986153200691e-27!GO:0043232;intracellular non-membrane-bound organelle;4.1986153200691e-27!GO:0005681;spliceosome;1.51593503679652e-25!GO:0022607;cellular component assembly;4.50571818605581e-25!GO:0005654;nucleoplasm;1.80358058256975e-24!GO:0051649;establishment of cellular localization;3.16568667966545e-24!GO:0051641;cellular localization;5.17333511062097e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.90641977204517e-23!GO:0005783;endoplasmic reticulum;3.73204815109942e-22!GO:0005740;mitochondrial envelope;1.25828572629458e-21!GO:0019866;organelle inner membrane;1.17250467232906e-20!GO:0044451;nucleoplasm part;1.31610186566661e-20!GO:0016462;pyrophosphatase activity;2.1780481821882e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.40621967302573e-20!GO:0044432;endoplasmic reticulum part;3.4628609143607e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;5.03315980069498e-20!GO:0031966;mitochondrial membrane;5.03315980069498e-20!GO:0006457;protein folding;5.47673168854091e-20!GO:0017111;nucleoside-triphosphatase activity;7.30154116739776e-20!GO:0006259;DNA metabolic process;9.06187078441088e-20!GO:0000166;nucleotide binding;1.37791124463581e-19!GO:0006119;oxidative phosphorylation;3.28714496087622e-19!GO:0005743;mitochondrial inner membrane;3.38973235729865e-19!GO:0044445;cytosolic part;6.15339116273378e-19!GO:0016874;ligase activity;1.66080322123048e-18!GO:0008134;transcription factor binding;1.94004039700142e-18!GO:0005794;Golgi apparatus;2.92959310788269e-18!GO:0003676;nucleic acid binding;4.75471715501354e-18!GO:0005730;nucleolus;4.84952602255591e-18!GO:0044265;cellular macromolecule catabolic process;7.53725405870091e-18!GO:0022618;protein-RNA complex assembly;1.0943768787235e-17!GO:0007049;cell cycle;3.72089902849429e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.95314799384398e-17!GO:0015934;large ribosomal subunit;1.33505878328838e-16!GO:0043285;biopolymer catabolic process;1.51777597623112e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.51777597623112e-16!GO:0016070;RNA metabolic process;1.61910663576108e-16!GO:0019941;modification-dependent protein catabolic process;1.95332113644266e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.95332113644266e-16!GO:0006512;ubiquitin cycle;2.18676408018891e-16!GO:0044455;mitochondrial membrane part;2.23525165724018e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.37216472226938e-16!GO:0044257;cellular protein catabolic process;2.86294251999432e-16!GO:0015935;small ribosomal subunit;4.47936465011812e-16!GO:0009057;macromolecule catabolic process;4.87290794274781e-16!GO:0048193;Golgi vesicle transport;4.87290794274781e-16!GO:0031980;mitochondrial lumen;8.55511438779151e-16!GO:0005759;mitochondrial matrix;8.55511438779151e-16!GO:0048770;pigment granule;1.27118684221396e-15!GO:0042470;melanosome;1.27118684221396e-15!GO:0030163;protein catabolic process;1.76014814332595e-15!GO:0006605;protein targeting;2.13967027220343e-15!GO:0016192;vesicle-mediated transport;5.03051414177079e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.07339821997659e-15!GO:0005789;endoplasmic reticulum membrane;2.38814820960458e-14!GO:0005746;mitochondrial respiratory chain;2.63892049015053e-14!GO:0044248;cellular catabolic process;4.26603548224381e-14!GO:0051082;unfolded protein binding;7.28611064056492e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.35127911750158e-14!GO:0017076;purine nucleotide binding;9.82390471509632e-14!GO:0005635;nuclear envelope;1.12667822192974e-13!GO:0032553;ribonucleotide binding;1.19852132425338e-13!GO:0032555;purine ribonucleotide binding;1.19852132425338e-13!GO:0051186;cofactor metabolic process;1.24043057078401e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.49092728616278e-13!GO:0000375;RNA splicing, via transesterification reactions;2.49092728616278e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.49092728616278e-13!GO:0031965;nuclear membrane;5.14753320958727e-13!GO:0005761;mitochondrial ribosome;6.68078953797124e-13!GO:0000313;organellar ribosome;6.68078953797124e-13!GO:0043412;biopolymer modification;8.40359435282367e-13!GO:0042254;ribosome biogenesis and assembly;8.66359399043927e-13!GO:0006913;nucleocytoplasmic transport;9.07014395500172e-13!GO:0008135;translation factor activity, nucleic acid binding;9.64069599130173e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.24484070951247e-12!GO:0003954;NADH dehydrogenase activity;1.24484070951247e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.24484070951247e-12!GO:0051169;nuclear transport;1.98276152149039e-12!GO:0006974;response to DNA damage stimulus;2.26795869969737e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.12194014272992e-12!GO:0016604;nuclear body;5.69710711542241e-12!GO:0022402;cell cycle process;6.05557520774461e-12!GO:0006732;coenzyme metabolic process;1.06190280322296e-11!GO:0003712;transcription cofactor activity;1.53228569683242e-11!GO:0012501;programmed cell death;1.66675975146483e-11!GO:0006464;protein modification process;2.2088049382631e-11!GO:0005793;ER-Golgi intermediate compartment;2.25426078242928e-11!GO:0044453;nuclear membrane part;2.48567400590889e-11!GO:0006915;apoptosis;2.58121447240287e-11!GO:0005524;ATP binding;3.57195871559014e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.37655572200879e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.04707184040619e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.07902328442043e-11!GO:0042773;ATP synthesis coupled electron transport;5.07902328442043e-11!GO:0032559;adenyl ribonucleotide binding;7.58869435222461e-11!GO:0004386;helicase activity;7.63454125797608e-11!GO:0030554;adenyl nucleotide binding;7.68860321822142e-11!GO:0030964;NADH dehydrogenase complex (quinone);8.38531600072139e-11!GO:0045271;respiratory chain complex I;8.38531600072139e-11!GO:0005747;mitochondrial respiratory chain complex I;8.38531600072139e-11!GO:0016887;ATPase activity;1.54369735840112e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.64495248124847e-10!GO:0008639;small protein conjugating enzyme activity;1.68100133194147e-10!GO:0000278;mitotic cell cycle;1.83841737793938e-10!GO:0008219;cell death;2.3325162430201e-10!GO:0016265;death;2.3325162430201e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.41473382217222e-10!GO:0006281;DNA repair;2.80513365135182e-10!GO:0004842;ubiquitin-protein ligase activity;2.91964437138736e-10!GO:0006446;regulation of translational initiation;3.03545437022951e-10!GO:0006413;translational initiation;5.3128257680654e-10!GO:0008026;ATP-dependent helicase activity;6.23615865728431e-10!GO:0003743;translation initiation factor activity;6.23615865728431e-10!GO:0019787;small conjugating protein ligase activity;6.74157108392817e-10!GO:0042623;ATPase activity, coupled;6.74157108392817e-10!GO:0006461;protein complex assembly;8.07914843493701e-10!GO:0016607;nuclear speck;9.12622106391701e-10!GO:0006399;tRNA metabolic process;9.86431336445144e-10!GO:0016881;acid-amino acid ligase activity;1.36677809541393e-09!GO:0017038;protein import;1.43924136326323e-09!GO:0009055;electron carrier activity;1.48508253958298e-09!GO:0006366;transcription from RNA polymerase II promoter;1.68418423612491e-09!GO:0005643;nuclear pore;2.71678750936569e-09!GO:0009056;catabolic process;4.21946955364101e-09!GO:0005768;endosome;4.38214983513378e-09!GO:0043687;post-translational protein modification;4.46258339270034e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.07338125362628e-09!GO:0006888;ER to Golgi vesicle-mediated transport;6.33978214783339e-09!GO:0006403;RNA localization;9.40063253627892e-09!GO:0044431;Golgi apparatus part;9.6548837886592e-09!GO:0050657;nucleic acid transport;1.12461745351721e-08!GO:0051236;establishment of RNA localization;1.12461745351721e-08!GO:0050658;RNA transport;1.12461745351721e-08!GO:0008565;protein transporter activity;1.20456570546934e-08!GO:0051276;chromosome organization and biogenesis;1.21230068452848e-08!GO:0009259;ribonucleotide metabolic process;1.29186583176879e-08!GO:0009719;response to endogenous stimulus;2.11056050345003e-08!GO:0006260;DNA replication;2.25557715652758e-08!GO:0043038;amino acid activation;2.66537675376225e-08!GO:0006418;tRNA aminoacylation for protein translation;2.66537675376225e-08!GO:0043039;tRNA aminoacylation;2.66537675376225e-08!GO:0006163;purine nucleotide metabolic process;2.66709273021933e-08!GO:0051246;regulation of protein metabolic process;2.99469053450592e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.99469053450592e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.99469053450592e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.99469053450592e-08!GO:0065002;intracellular protein transport across a membrane;3.07035943999172e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.44190936474309e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.49180804585155e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.57419693522278e-08!GO:0009060;aerobic respiration;4.18830304613669e-08!GO:0051188;cofactor biosynthetic process;5.40989299084553e-08!GO:0006164;purine nucleotide biosynthetic process;5.43254426489093e-08!GO:0022403;cell cycle phase;5.44777638977507e-08!GO:0009150;purine ribonucleotide metabolic process;6.64499085772653e-08!GO:0005788;endoplasmic reticulum lumen;6.75034058630917e-08!GO:0006364;rRNA processing;7.23475669979583e-08!GO:0016072;rRNA metabolic process;7.48592185064263e-08!GO:0005839;proteasome core complex (sensu Eukaryota);8.42835680620567e-08!GO:0009260;ribonucleotide biosynthetic process;8.84720182198979e-08!GO:0043067;regulation of programmed cell death;9.76694867679866e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.13054453692312e-07!GO:0042981;regulation of apoptosis;1.16900646866103e-07!GO:0000087;M phase of mitotic cell cycle;1.19264161185232e-07!GO:0030120;vesicle coat;1.30193442447745e-07!GO:0030662;coated vesicle membrane;1.30193442447745e-07!GO:0003924;GTPase activity;1.30326335277463e-07!GO:0015986;ATP synthesis coupled proton transport;1.31818112382739e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31818112382739e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.33774977245743e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.39008078826054e-07!GO:0045333;cellular respiration;1.50272802899238e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.55651034847748e-07!GO:0051726;regulation of cell cycle;1.66278805371974e-07!GO:0000074;regulation of progression through cell cycle;1.85470295698941e-07!GO:0050794;regulation of cellular process;1.89392205580758e-07!GO:0005694;chromosome;1.93048877684202e-07!GO:0007067;mitosis;2.00739680146307e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.08548804709461e-07!GO:0051170;nuclear import;2.52156655159008e-07!GO:0016787;hydrolase activity;2.90187473767302e-07!GO:0046930;pore complex;3.12291548022601e-07!GO:0051301;cell division;3.54135336525898e-07!GO:0005773;vacuole;4.09829912039597e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;4.55963765678224e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.77841333061905e-07!GO:0044440;endosomal part;5.5296932251771e-07!GO:0010008;endosome membrane;5.5296932251771e-07!GO:0048523;negative regulation of cellular process;5.91291437407626e-07!GO:0004298;threonine endopeptidase activity;6.0863102364707e-07!GO:0048475;coated membrane;6.10049557828497e-07!GO:0030117;membrane coat;6.10049557828497e-07!GO:0006606;protein import into nucleus;6.48930708721576e-07!GO:0009108;coenzyme biosynthetic process;6.81043897938916e-07!GO:0051028;mRNA transport;6.88024621102696e-07!GO:0009117;nucleotide metabolic process;8.46874008820148e-07!GO:0000245;spliceosome assembly;8.65178688312178e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.09521431280749e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.09521431280749e-07!GO:0019829;cation-transporting ATPase activity;9.09521431280749e-07!GO:0032446;protein modification by small protein conjugation;9.18285025472702e-07!GO:0009141;nucleoside triphosphate metabolic process;9.24970790688805e-07!GO:0000139;Golgi membrane;9.27155750824988e-07!GO:0043566;structure-specific DNA binding;9.92647495816096e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.11328446479798e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.13170407611628e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.13170407611628e-06!GO:0016567;protein ubiquitination;1.20166803333008e-06!GO:0006323;DNA packaging;1.23618332203316e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.39307609772715e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.39307609772715e-06!GO:0043069;negative regulation of programmed cell death;1.61738703423573e-06!GO:0007005;mitochondrion organization and biogenesis;1.67529160441989e-06!GO:0006754;ATP biosynthetic process;1.93274416233038e-06!GO:0006753;nucleoside phosphate metabolic process;1.93274416233038e-06!GO:0000323;lytic vacuole;1.93464826133938e-06!GO:0005764;lysosome;1.93464826133938e-06!GO:0031988;membrane-bound vesicle;1.937913050025e-06!GO:0006099;tricarboxylic acid cycle;2.13630122498812e-06!GO:0046356;acetyl-CoA catabolic process;2.13630122498812e-06!GO:0003724;RNA helicase activity;2.18964123207792e-06!GO:0031982;vesicle;2.31611023659819e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.35381084425674e-06!GO:0016740;transferase activity;2.39022308970124e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.45561212697846e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.45963912117585e-06!GO:0000279;M phase;3.04806667565501e-06!GO:0031410;cytoplasmic vesicle;3.20290184615908e-06!GO:0044427;chromosomal part;3.21998881714742e-06!GO:0046034;ATP metabolic process;3.28057850642654e-06!GO:0005770;late endosome;3.37004390221397e-06!GO:0005798;Golgi-associated vesicle;3.69347311464274e-06!GO:0043066;negative regulation of apoptosis;3.98450516749101e-06!GO:0043623;cellular protein complex assembly;4.59452928985959e-06!GO:0006613;cotranslational protein targeting to membrane;4.62944408432672e-06!GO:0006916;anti-apoptosis;5.52388945281116e-06!GO:0006084;acetyl-CoA metabolic process;5.65602615971811e-06!GO:0051789;response to protein stimulus;5.7046529974634e-06!GO:0006986;response to unfolded protein;5.7046529974634e-06!GO:0016779;nucleotidyltransferase activity;6.86012761015138e-06!GO:0003714;transcription corepressor activity;7.69799380977866e-06!GO:0016853;isomerase activity;8.84044499223768e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.24168794355401e-06!GO:0016469;proton-transporting two-sector ATPase complex;9.89087242203939e-06!GO:0048519;negative regulation of biological process;1.04641174170323e-05!GO:0003713;transcription coactivator activity;1.0964275595366e-05!GO:0003697;single-stranded DNA binding;1.1085312225766e-05!GO:0045259;proton-transporting ATP synthase complex;1.15221882471553e-05!GO:0016859;cis-trans isomerase activity;1.35845719764875e-05!GO:0015630;microtubule cytoskeleton;1.35845719764875e-05!GO:0016563;transcription activator activity;1.59792608456975e-05!GO:0016568;chromatin modification;1.91353585917359e-05!GO:0007243;protein kinase cascade;2.41280581068384e-05!GO:0005525;GTP binding;2.41280581068384e-05!GO:0031324;negative regulation of cellular metabolic process;2.65152297210768e-05!GO:0016564;transcription repressor activity;2.69419623377469e-05!GO:0000151;ubiquitin ligase complex;2.82061283381373e-05!GO:0016491;oxidoreductase activity;3.36781233539546e-05!GO:0009109;coenzyme catabolic process;3.438409629304e-05!GO:0030867;rough endoplasmic reticulum membrane;3.51288697513531e-05!GO:0065004;protein-DNA complex assembly;3.75171028644005e-05!GO:0006752;group transfer coenzyme metabolic process;4.13947309302458e-05!GO:0043021;ribonucleoprotein binding;4.46227960168974e-05!GO:0005667;transcription factor complex;4.73955880548738e-05!GO:0051187;cofactor catabolic process;5.90616287918891e-05!GO:0009892;negative regulation of metabolic process;6.42508650757666e-05!GO:0006793;phosphorus metabolic process;6.57962606852995e-05!GO:0006796;phosphate metabolic process;6.57962606852995e-05!GO:0008186;RNA-dependent ATPase activity;6.86812028789161e-05!GO:0045454;cell redox homeostasis;7.4895642417004e-05!GO:0008654;phospholipid biosynthetic process;8.07469595184709e-05!GO:0030133;transport vesicle;8.74054562824222e-05!GO:0031252;leading edge;0.000103658552930883!GO:0019899;enzyme binding;0.000110467076591087!GO:0051168;nuclear export;0.000110674723164973!GO:0051427;hormone receptor binding;0.000116585678133029!GO:0048471;perinuclear region of cytoplasm;0.000117314281449616!GO:0005813;centrosome;0.000123216220375613!GO:0005762;mitochondrial large ribosomal subunit;0.000128442691656527!GO:0000315;organellar large ribosomal subunit;0.000128442691656527!GO:0005791;rough endoplasmic reticulum;0.000142798481218873!GO:0050789;regulation of biological process;0.000146277009848318!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000151162129343753!GO:0007010;cytoskeleton organization and biogenesis;0.000151162129343753!GO:0006612;protein targeting to membrane;0.000155664109369803!GO:0003899;DNA-directed RNA polymerase activity;0.00015906253248011!GO:0033116;ER-Golgi intermediate compartment membrane;0.000175803477948944!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000175803477948944!GO:0008250;oligosaccharyl transferase complex;0.000196920677683312!GO:0004004;ATP-dependent RNA helicase activity;0.000203883650558668!GO:0030036;actin cytoskeleton organization and biogenesis;0.000204040932386732!GO:0035257;nuclear hormone receptor binding;0.000231785826129183!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000234675937747088!GO:0032561;guanyl ribonucleotide binding;0.000275337306801123!GO:0019001;guanyl nucleotide binding;0.000275337306801123!GO:0003690;double-stranded DNA binding;0.000283432781370143!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000283591833840309!GO:0006891;intra-Golgi vesicle-mediated transport;0.000300036572041395!GO:0005048;signal sequence binding;0.000301417793283891!GO:0016363;nuclear matrix;0.000306529818067445!GO:0005815;microtubule organizing center;0.000317783933753892!GO:0006333;chromatin assembly or disassembly;0.000334831420928401!GO:0016126;sterol biosynthetic process;0.000353968949853346!GO:0000314;organellar small ribosomal subunit;0.000363493886705781!GO:0005763;mitochondrial small ribosomal subunit;0.000363493886705781!GO:0006091;generation of precursor metabolites and energy;0.000378515548029178!GO:0030176;integral to endoplasmic reticulum membrane;0.000396467330557533!GO:0005769;early endosome;0.000411251033583242!GO:0004576;oligosaccharyl transferase activity;0.000453717261331214!GO:0016310;phosphorylation;0.000488656041683895!GO:0008361;regulation of cell size;0.000490350338157077!GO:0005885;Arp2/3 protein complex;0.000504555389033497!GO:0009967;positive regulation of signal transduction;0.000534838114526211!GO:0001558;regulation of cell growth;0.000570005389348059!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0006440682841407!GO:0031072;heat shock protein binding;0.000711430890331795!GO:0000785;chromatin;0.000713085951465257!GO:0019222;regulation of metabolic process;0.000736098019569202!GO:0046489;phosphoinositide biosynthetic process;0.00078978093809291!GO:0009165;nucleotide biosynthetic process;0.000799025512959717!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000852209590606589!GO:0008092;cytoskeletal protein binding;0.00087127011400019!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000926094034447486!GO:0016049;cell growth;0.000930507049078573!GO:0006695;cholesterol biosynthetic process;0.000972925592122893!GO:0015980;energy derivation by oxidation of organic compounds;0.00102348069545847!GO:0051252;regulation of RNA metabolic process;0.00103250360206412!GO:0006402;mRNA catabolic process;0.00104427217927841!GO:0048522;positive regulation of cellular process;0.00109368497006726!GO:0030134;ER to Golgi transport vesicle;0.0010960194208205!GO:0030127;COPII vesicle coat;0.00112827958959961!GO:0012507;ER to Golgi transport vesicle membrane;0.00112827958959961!GO:0016044;membrane organization and biogenesis;0.00113355772115929!GO:0005905;coated pit;0.00113863317391649!GO:0045045;secretory pathway;0.00114385229318015!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00118396903245056!GO:0042802;identical protein binding;0.00119931929021384!GO:0000075;cell cycle checkpoint;0.0012159730429501!GO:0018196;peptidyl-asparagine modification;0.00123383392639472!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00123383392639472!GO:0007264;small GTPase mediated signal transduction;0.00123545509057294!GO:0051329;interphase of mitotic cell cycle;0.00131195875680199!GO:0006261;DNA-dependent DNA replication;0.00131664289567087!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0013339035282997!GO:0048500;signal recognition particle;0.0013339035282997!GO:0045786;negative regulation of progression through cell cycle;0.00139487576040842!GO:0046483;heterocycle metabolic process;0.00148478929267395!GO:0030029;actin filament-based process;0.00148478929267395!GO:0006352;transcription initiation;0.00155339333735636!GO:0046474;glycerophospholipid biosynthetic process;0.00160873523831774!GO:0031902;late endosome membrane;0.00165824317612916!GO:0030663;COPI coated vesicle membrane;0.00174594340036039!GO:0030126;COPI vesicle coat;0.00174594340036039!GO:0008610;lipid biosynthetic process;0.00177268731217289!GO:0009112;nucleobase metabolic process;0.00181713901767188!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00186219016113829!GO:0006672;ceramide metabolic process;0.00203670580568089!GO:0006383;transcription from RNA polymerase III promoter;0.00204338147021485!GO:0043488;regulation of mRNA stability;0.00208038408647139!GO:0043487;regulation of RNA stability;0.00208038408647139!GO:0030658;transport vesicle membrane;0.00213764316049429!GO:0051325;interphase;0.00214946232278075!GO:0003729;mRNA binding;0.00236486014470026!GO:0050662;coenzyme binding;0.00254979776937904!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00264932254998558!GO:0045047;protein targeting to ER;0.00264932254998558!GO:0016251;general RNA polymerase II transcription factor activity;0.00293378979197433!GO:0001726;ruffle;0.00302355254781198!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00303607546716043!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00303607546716043!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00303607546716043!GO:0044452;nucleolar part;0.00310402040647324!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00313317644968156!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00315151018925584!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0031630322610391!GO:0051059;NF-kappaB binding;0.00318066642228751!GO:0006414;translational elongation;0.00318176875045522!GO:0016197;endosome transport;0.00325093318752528!GO:0046519;sphingoid metabolic process;0.00347824284859857!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00359719360434846!GO:0046467;membrane lipid biosynthetic process;0.00359719360434846!GO:0032940;secretion by cell;0.00365521448437159!GO:0005819;spindle;0.00373358766211798!GO:0016481;negative regulation of transcription;0.00373905376736744!GO:0043681;protein import into mitochondrion;0.00381185248709112!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00388011634297217!GO:0008312;7S RNA binding;0.00398975558667727!GO:0008033;tRNA processing;0.00398975558667727!GO:0000059;protein import into nucleus, docking;0.00403388566760974!GO:0051235;maintenance of localization;0.00404745219559192!GO:0030384;phosphoinositide metabolic process;0.00411080224723037!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00416907115487586!GO:0065009;regulation of a molecular function;0.00428287975339548!GO:0030880;RNA polymerase complex;0.0043463299636773!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00438244801995576!GO:0030137;COPI-coated vesicle;0.00438244801995576!GO:0006401;RNA catabolic process;0.00454811440494814!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00464682870425167!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00471911104316011!GO:0051920;peroxiredoxin activity;0.00483804303036358!GO:0006497;protein amino acid lipidation;0.00490827220611357!GO:0005684;U2-dependent spliceosome;0.00494087500362275!GO:0031968;organelle outer membrane;0.00494087500362275!GO:0033673;negative regulation of kinase activity;0.00500533241822577!GO:0006469;negative regulation of protein kinase activity;0.00500533241822577!GO:0030660;Golgi-associated vesicle membrane;0.00519353822517696!GO:0006950;response to stress;0.00536891277349643!GO:0019867;outer membrane;0.00541090401831712!GO:0006302;double-strand break repair;0.00553681882474365!GO:0051128;regulation of cellular component organization and biogenesis;0.00589314995743741!GO:0044262;cellular carbohydrate metabolic process;0.00594693653073516!GO:0006818;hydrogen transport;0.00638136723438228!GO:0009116;nucleoside metabolic process;0.00646951601739068!GO:0007051;spindle organization and biogenesis;0.00655666779669627!GO:0006506;GPI anchor biosynthetic process;0.00656250873641738!GO:0019752;carboxylic acid metabolic process;0.00656577067081661!GO:0006769;nicotinamide metabolic process;0.00669690617703882!GO:0015992;proton transport;0.00691763921790913!GO:0007088;regulation of mitosis;0.00699065073205591!GO:0045893;positive regulation of transcription, DNA-dependent;0.00716339056167159!GO:0048487;beta-tubulin binding;0.00719634498261126!GO:0003678;DNA helicase activity;0.00724981306855679!GO:0030659;cytoplasmic vesicle membrane;0.00747810995475906!GO:0031625;ubiquitin protein ligase binding;0.00761764856240123!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00773589910787823!GO:0000428;DNA-directed RNA polymerase complex;0.00773589910787823!GO:0003746;translation elongation factor activity;0.00793079391179654!GO:0008180;signalosome;0.00793079391179654!GO:0008139;nuclear localization sequence binding;0.0080126229686173!GO:0019843;rRNA binding;0.00815216293695461!GO:0005657;replication fork;0.00815216293695461!GO:0006650;glycerophospholipid metabolic process;0.00818859278617736!GO:0051348;negative regulation of transferase activity;0.00821279162928756!GO:0051052;regulation of DNA metabolic process;0.00831697432636634!GO:0003923;GPI-anchor transamidase activity;0.00854617465306455!GO:0016255;attachment of GPI anchor to protein;0.00854617465306455!GO:0042765;GPI-anchor transamidase complex;0.00854617465306455!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00864665159160073!GO:0015399;primary active transmembrane transporter activity;0.00864665159160073!GO:0006082;organic acid metabolic process;0.00873580277544099!GO:0030132;clathrin coat of coated pit;0.00905291591006597!GO:0006509;membrane protein ectodomain proteolysis;0.00909527693478557!GO:0033619;membrane protein proteolysis;0.00909527693478557!GO:0051087;chaperone binding;0.00909527693478557!GO:0003711;transcription elongation regulator activity;0.00909527693478557!GO:0006417;regulation of translation;0.00911923917037779!GO:0006505;GPI anchor metabolic process;0.00953466857489098!GO:0016272;prefoldin complex;0.00965669843468107!GO:0006405;RNA export from nucleus;0.00986607719305037!GO:0006611;protein export from nucleus;0.0100304026879351!GO:0007040;lysosome organization and biogenesis;0.0101806999502516!GO:0042158;lipoprotein biosynthetic process;0.0102475102665865!GO:0000082;G1/S transition of mitotic cell cycle;0.0105032616748536!GO:0003756;protein disulfide isomerase activity;0.0107237293403147!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0107237293403147!GO:0005832;chaperonin-containing T-complex;0.01106017072999!GO:0043022;ribosome binding;0.011163881528495!GO:0007093;mitotic cell cycle checkpoint;0.0111671420457319!GO:0006892;post-Golgi vesicle-mediated transport;0.0116422947117574!GO:0040008;regulation of growth;0.01169070886682!GO:0006740;NADPH regeneration;0.0117470649115652!GO:0006098;pentose-phosphate shunt;0.0117470649115652!GO:0006839;mitochondrial transport;0.011905898535154!GO:0046966;thyroid hormone receptor binding;0.0120076852148765!GO:0032200;telomere organization and biogenesis;0.012223892093259!GO:0000723;telomere maintenance;0.012223892093259!GO:0044433;cytoplasmic vesicle part;0.0124613365398404!GO:0030118;clathrin coat;0.0125034173140568!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0125286037773461!GO:0046822;regulation of nucleocytoplasmic transport;0.012546267730454!GO:0032507;maintenance of cellular protein localization;0.012546267730454!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0130636701361991!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0130636701361991!GO:0051287;NAD binding;0.013255126381035!GO:0012506;vesicle membrane;0.0132716835360043!GO:0003682;chromatin binding;0.014513714229794!GO:0005774;vacuolar membrane;0.0147384573070269!GO:0005862;muscle thin filament tropomyosin;0.0147920756991347!GO:0017166;vinculin binding;0.015249167505427!GO:0045792;negative regulation of cell size;0.015249167505427!GO:0000209;protein polyubiquitination;0.0154544495947481!GO:0006626;protein targeting to mitochondrion;0.0158100857290489!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0158100857290489!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.015932123698305!GO:0015002;heme-copper terminal oxidase activity;0.015932123698305!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.015932123698305!GO:0004129;cytochrome-c oxidase activity;0.015932123698305!GO:0030521;androgen receptor signaling pathway;0.0160292400556967!GO:0006334;nucleosome assembly;0.0163502293721131!GO:0006310;DNA recombination;0.0168558461340811!GO:0004674;protein serine/threonine kinase activity;0.0168692057797618!GO:0007033;vacuole organization and biogenesis;0.0168858058223236!GO:0005938;cell cortex;0.0179774215665395!GO:0016408;C-acyltransferase activity;0.0179808615485284!GO:0015631;tubulin binding;0.0181801900748063!GO:0004860;protein kinase inhibitor activity;0.0181801900748063!GO:0005874;microtubule;0.0182922520817058!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0183417640156054!GO:0009119;ribonucleoside metabolic process;0.0186315875765822!GO:0045185;maintenance of protein localization;0.0192703899978474!GO:0022890;inorganic cation transmembrane transporter activity;0.0195453088938432!GO:0043065;positive regulation of apoptosis;0.0196680803737366!GO:0006767;water-soluble vitamin metabolic process;0.0197059910257192!GO:0030149;sphingolipid catabolic process;0.0197375817259277!GO:0007034;vacuolar transport;0.0197375817259277!GO:0030308;negative regulation of cell growth;0.0197957735767944!GO:0005741;mitochondrial outer membrane;0.0200683364816464!GO:0007050;cell cycle arrest;0.0203275766880916!GO:0000049;tRNA binding;0.0204661911315062!GO:0043624;cellular protein complex disassembly;0.020544874189561!GO:0006144;purine base metabolic process;0.0207447259143468!GO:0046983;protein dimerization activity;0.0209392720486747!GO:0000776;kinetochore;0.0209392720486747!GO:0006984;ER-nuclear signaling pathway;0.0210128618338041!GO:0005637;nuclear inner membrane;0.0213122363766262!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0214076290511232!GO:0022406;membrane docking;0.0215289299494653!GO:0048278;vesicle docking;0.0215289299494653!GO:0016860;intramolecular oxidoreductase activity;0.0215558373196981!GO:0008637;apoptotic mitochondrial changes;0.0216195732492138!GO:0043068;positive regulation of programmed cell death;0.0217337995182888!GO:0032906;transforming growth factor-beta2 production;0.0217501799223817!GO:0032909;regulation of transforming growth factor-beta2 production;0.0217501799223817!GO:0065007;biological regulation;0.0219125113193759!GO:0008097;5S rRNA binding;0.0223616534723159!GO:0031497;chromatin assembly;0.0224361957311944!GO:0006376;mRNA splice site selection;0.0227756935974499!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0227756935974499!GO:0006607;NLS-bearing substrate import into nucleus;0.0234059526558422!GO:0031323;regulation of cellular metabolic process;0.0238417291360171!GO:0006733;oxidoreduction coenzyme metabolic process;0.0239569517589469!GO:0004527;exonuclease activity;0.024056486931226!GO:0006520;amino acid metabolic process;0.0242698610703347!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0248475894794375!GO:0007030;Golgi organization and biogenesis;0.0248475894794375!GO:0008022;protein C-terminus binding;0.0249132670075263!GO:0031124;mRNA 3'-end processing;0.0251897438052717!GO:0051101;regulation of DNA binding;0.025367895592196!GO:0008047;enzyme activator activity;0.0255194364833781!GO:0003684;damaged DNA binding;0.0255194364833781!GO:0045936;negative regulation of phosphate metabolic process;0.0256616520684514!GO:0051098;regulation of binding;0.0259173112757422!GO:0008601;protein phosphatase type 2A regulator activity;0.0262535322088695!GO:0043492;ATPase activity, coupled to movement of substances;0.026609167211302!GO:0019362;pyridine nucleotide metabolic process;0.026609167211302!GO:0043433;negative regulation of transcription factor activity;0.0268688514954752!GO:0045941;positive regulation of transcription;0.027164228386973!GO:0005869;dynactin complex;0.0275342854049298!GO:0006739;NADP metabolic process;0.0275672090815769!GO:0051651;maintenance of cellular localization;0.027584977171103!GO:0050811;GABA receptor binding;0.0277702880040468!GO:0016615;malate dehydrogenase activity;0.0279137780268982!GO:0031326;regulation of cellular biosynthetic process;0.0279977248643904!GO:0006007;glucose catabolic process;0.0283926544463704!GO:0005669;transcription factor TFIID complex;0.0284219028397103!GO:0006904;vesicle docking during exocytosis;0.0289771296520579!GO:0035258;steroid hormone receptor binding;0.0289771296520579!GO:0048518;positive regulation of biological process;0.0291445845154481!GO:0006595;polyamine metabolic process;0.0298293545999103!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0301660022320781!GO:0035267;NuA4 histone acetyltransferase complex;0.0304286590078599!GO:0006665;sphingolipid metabolic process;0.0305682363082726!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0309645154958189!GO:0017134;fibroblast growth factor binding;0.0315719754800676!GO:0030119;AP-type membrane coat adaptor complex;0.0316131123527696!GO:0005765;lysosomal membrane;0.0320001537775711!GO:0031301;integral to organelle membrane;0.0320718703312537!GO:0009889;regulation of biosynthetic process;0.0326616418077573!GO:0043189;H4/H2A histone acetyltransferase complex;0.0327638170162935!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0328218828501019!GO:0008234;cysteine-type peptidase activity;0.0328786441669815!GO:0048819;regulation of hair follicle maturation;0.0331988120138837!GO:0051794;regulation of catagen;0.0331988120138837!GO:0051795;positive regulation of catagen;0.0331988120138837!GO:0048818;positive regulation of hair follicle maturation;0.0331988120138837!GO:0030027;lamellipodium;0.0332118609023092!GO:0006378;mRNA polyadenylation;0.0337064750469497!GO:0048037;cofactor binding;0.0337284633761744!GO:0032984;macromolecular complex disassembly;0.0337417134236935!GO:0007004;telomere maintenance via telomerase;0.0338305847456543!GO:0016407;acetyltransferase activity;0.0339839093713795!GO:0032508;DNA duplex unwinding;0.034089266321741!GO:0032392;DNA geometric change;0.034089266321741!GO:0044437;vacuolar part;0.0341779717443189!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0341779717443189!GO:0008538;proteasome activator activity;0.0343887136863031!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0351722655578677!GO:0003702;RNA polymerase II transcription factor activity;0.0353568166725183!GO:0000086;G2/M transition of mitotic cell cycle;0.0353774244861192!GO:0016125;sterol metabolic process;0.0363476817563479!GO:0043284;biopolymer biosynthetic process;0.0371235627140652!GO:0030224;monocyte differentiation;0.0374757983747781!GO:0051540;metal cluster binding;0.0375197744485758!GO:0051536;iron-sulfur cluster binding;0.0375197744485758!GO:0007052;mitotic spindle organization and biogenesis;0.0375197744485758!GO:0019377;glycolipid catabolic process;0.0375336425397816!GO:0008094;DNA-dependent ATPase activity;0.0378873235366713!GO:0048468;cell development;0.0379824132170957!GO:0030131;clathrin adaptor complex;0.0385331967876917!GO:0042326;negative regulation of phosphorylation;0.0385638196285686!GO:0001836;release of cytochrome c from mitochondria;0.0386127138858115!GO:0006360;transcription from RNA polymerase I promoter;0.0389302152878704!GO:0019318;hexose metabolic process;0.0390413061224106!GO:0006354;RNA elongation;0.0390413061224106!GO:0000339;RNA cap binding;0.0393808980749521!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0394757923351024!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0402110906921652!GO:0009081;branched chain family amino acid metabolic process;0.0402814371033601!GO:0030125;clathrin vesicle coat;0.0405309071077412!GO:0030665;clathrin coated vesicle membrane;0.0405309071077412!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0409384555995666!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0409384555995666!GO:0007021;tubulin folding;0.0409778385095134!GO:0006118;electron transport;0.0419967431677256!GO:0005996;monosaccharide metabolic process;0.0426860157028435!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0427993769963741!GO:0000159;protein phosphatase type 2A complex;0.0429959612800134!GO:0047485;protein N-terminus binding;0.0431886243892993!GO:0030968;unfolded protein response;0.0433691362925995!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0436711209310068!GO:0005758;mitochondrial intermembrane space;0.0450033017599777!GO:0007162;negative regulation of cell adhesion;0.0451479053352042!GO:0006643;membrane lipid metabolic process;0.0462607506485818!GO:0022415;viral reproductive process;0.0468377812043747!GO:0016791;phosphoric monoester hydrolase activity;0.0468956720269503!GO:0005784;translocon complex;0.0469567399831897!GO:0030032;lamellipodium biogenesis;0.0472006615202732!GO:0000781;chromosome, telomeric region;0.0484837711111237!GO:0004003;ATP-dependent DNA helicase activity;0.0492793551104608!GO:0031970;organelle envelope lumen;0.0493057657762444!GO:0030433;ER-associated protein catabolic process;0.0494400507751546!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0494400507751546!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.049533353867581!GO:0030503;regulation of cell redox homeostasis;0.0498482141263689
|sample_id=10415
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=gall bladder
|top_motifs=ADNP_IRX_SIX_ZHX:1.56835707453;HSF1,2:1.51224439008;MYOD1:1.3607370381;STAT5{A,B}:1.3460824563;ZEB1:1.20343428067;STAT1,3:1.15024921235;EN1,2:1.08865793938;SNAI1..3:1.02879698673;VSX1,2:1.0124706281;HOXA9_MEIS1:0.994063600531;TBX4,5:0.975538402285;AHR_ARNT_ARNT2:0.930421614966;NKX2-1,4:0.863972999626;IKZF1:0.857017504489;bHLH_family:0.833890281516;ELK1,4_GABP{A,B1}:0.825468889533;NFE2L2:0.755037098744;SP1:0.753429539222;TEAD1:0.693140656191;POU1F1:0.618734635052;NKX3-1:0.612787496546;FOXA2:0.5640704702;NKX3-2:0.558780349252;PITX1..3:0.538072856954;LMO2:0.517819292811;BACH2:0.48081540563;RBPJ:0.46155442083;ZNF148:0.435693177907;NKX2-3_NKX2-5:0.435664700957;FOXN1:0.396863827503;PAX5:0.38618468581;HLF:0.378340330862;NFE2:0.369530620456;FOSL2:0.340060335885;FOS_FOS{B,L1}_JUN{B,D}:0.324877789422;XBP1:0.307217567325;SOX17:0.290876132676;LHX3,4:0.241357122324;HAND1,2:0.236503680454;HIF1A:0.234070727416;NFIX:0.222517071353;NFKB1_REL_RELA:0.20919477896;TLX1..3_NFIC{dimer}:0.206499631573;ATF4:0.205944455193;ELF1,2,4:0.199247856418;NRF1:0.185981001249;ARID5B:0.183884072205;PPARG:0.163008862975;XCPE1{core}:0.151347234426;ATF6:0.144942490175;HNF1A:0.14265882203;EP300:0.139479982653;CRX:0.137147435763;NFY{A,B,C}:0.129053368738;MYB:0.12126057524;SOX2:0.118656304885;LEF1_TCF7_TCF7L1,2:0.110513108377;ZNF143:0.109724922227;ZNF238:0.0970727032499;TFCP2:0.0927085218388;PAX8:0.0875411723559;NKX6-1,2:0.0697416625174;HMGA1,2:0.0589491455713;STAT2,4,6:0.0353615390625;ATF2:0.00787713653536;RFX1:-0.0043782062242;ATF5_CREB3:-0.00497804386774;ZFP161:-0.0135720010338;TEF:-0.0170998832088;TAL1_TCF{3,4,12}:-0.0193534448409;FOXQ1:-0.033104184894;HBP1_HMGB_SSRP1_UBTF:-0.0460228457054;IRF7:-0.0600454138976;ZBTB16:-0.0608320732144;ZBTB6:-0.0663444530265;PRDM1:-0.0724108586728;ALX4:-0.0750799835887;GFI1:-0.0769917275828;HES1:-0.0865374560748;MYBL2:-0.0882836318428;RFX2..5_RFXANK_RFXAP:-0.0905978558777;ONECUT1,2:-0.0961010163508;HOX{A5,B5}:-0.103878401385;MAZ:-0.105086805188;YY1:-0.121212957169;PAX2:-0.145764109254;E2F1..5:-0.146136172394;GATA6:-0.150618335319;GLI1..3:-0.152898292741;NANOG:-0.165562056216;MED-1{core}:-0.165820588385;JUN:-0.166707230239;EGR1..3:-0.17083973587;PATZ1:-0.173488181545;MZF1:-0.174317823963;POU5F1:-0.176229081675;PRRX1,2:-0.178783874466;DBP:-0.192828110697;GTF2I:-0.194405003402;TFDP1:-0.19548532943;POU3F1..4:-0.198626395293;FOX{D1,D2}:-0.19939998249;OCT4_SOX2{dimer}:-0.206164352935;TBP:-0.213989121136;IRF1,2:-0.215846021823;MEF2{A,B,C,D}:-0.220072565929;ZIC1..3:-0.233003044607;NFATC1..3:-0.242481648554;GTF2A1,2:-0.242608748109;PBX1:-0.251977289683;HNF4A_NR2F1,2:-0.270994885675;ZNF423:-0.273096713398;ETS1,2:-0.28418176651;RUNX1..3:-0.284551747763;FOXP1:-0.308313172338;TP53:-0.311249958442;FOX{I1,J2}:-0.34091600248;CDC5L:-0.358863426108;CUX2:-0.359037662567;SPIB:-0.382948064327;TFAP2B:-0.384304419943;AIRE:-0.38690640874;GCM1,2:-0.391331812935;SRF:-0.394462705796;RREB1:-0.401079638569;HIC1:-0.401773547034;PDX1:-0.419926361468;CREB1:-0.427175388314;GFI1B:-0.428828486919;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.435025579015;BPTF:-0.437632091733;GZF1:-0.437643256399;CEBPA,B_DDIT3:-0.444293894811;SPI1:-0.448029457121;MTF1:-0.45593812435;MTE{core}:-0.461993977118;ALX1:-0.473328224853;BREu{core}:-0.479066376926;SMAD1..7,9:-0.481304108845;SREBF1,2:-0.483974072353;FOXO1,3,4:-0.490667583732;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.499453643622;PAX4:-0.516566065407;NR1H4:-0.523527469054;NR5A1,2:-0.52831993065;POU2F1..3:-0.547844463961;TFAP2{A,C}:-0.571232412446;PAX3,7:-0.580094531494;FOXL1:-0.590686057311;ESRRA:-0.595666664916;POU6F1:-0.597558830757;EVI1:-0.599800128748;RXRA_VDR{dimer}:-0.608620665191;NR6A1:-0.620371141793;NR3C1:-0.62322988132;FOXD3:-0.647775132896;DMAP1_NCOR{1,2}_SMARC:-0.652008788385;SOX5:-0.657862578113;NHLH1,2:-0.6798677252;TLX2:-0.681826394314;SOX{8,9,10}:-0.684723808744;NFIL3:-0.688873092036;MYFfamily:-0.690838100286;AR:-0.696272529557;T:-0.706464951439;CDX1,2,4:-0.725453089467;REST:-0.728834882703;NFE2L1:-0.730002071887;UFEwm:-0.732570064644;EBF1:-0.741222320609;KLF4:-0.766836246738;MAFB:-0.785104568179;PAX1,9:-0.818880021919;TOPORS:-0.848753720761;TFAP4:-0.891438435229;FOXP3:-0.926146708475;PAX6:-0.946025168151;HOX{A6,A7,B6,B7}:-0.949290193616;SPZ1:-0.964943722557;FOXM1:-0.979292490356;GATA4:-1.00356797767;FOX{F1,F2,J1}:-1.01131479895;IKZF2:-1.08244292651;RORA:-1.09219453004;ESR1:-1.13577345095;HOX{A4,D4}:-1.17534568495;HMX1:-1.19281425573;NANOG{mouse}:-1.24379640929;RXR{A,B,G}:-1.30103223807;ZNF384:-1.36028731848;NKX2-2,8:-1.38762351787;TGIF1:-1.54083895633
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10415-106C1;search_select_hide=table117:FF:10415-106C1
}}
}}

Latest revision as of 14:00, 3 June 2020

Name:gall bladder carcinoma cell line:TGBC2TKB
Species:Human (Homo sapiens)
Library ID:CNhs10733
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegall bladder
dev stageNA
sexfemale
ageunknown
cell typeunclassifiable
cell lineTGBC2TKB
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005593
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10733 CAGE DRX007889 DRR008761
Accession ID Hg19

Library idBAMCTSS
CNhs10733 DRZ000186 DRZ001571
Accession ID Hg38

Library idBAMCTSS
CNhs10733 DRZ011536 DRZ012921
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0502
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0939
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.191
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0294
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0334
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.139
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.236
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.555
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.021
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0335
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0335
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00122
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0364
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0335
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0335
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.256
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.373
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10733

Jaspar motifP-value
MA0002.20.66
MA0003.10.55
MA0004.10.525
MA0006.10.469
MA0007.10.504
MA0009.10.434
MA0014.10.0704
MA0017.10.691
MA0018.20.637
MA0019.10.454
MA0024.10.652
MA0025.10.174
MA0027.10.764
MA0028.17.2445e-9
MA0029.10.571
MA0030.10.315
MA0031.10.559
MA0035.20.92
MA0038.10.0758
MA0039.24.8828e-4
MA0040.10.833
MA0041.10.313
MA0042.10.732
MA0043.10.0255
MA0046.10.106
MA0047.20.263
MA0048.10.311
MA0050.10.942
MA0051.10.055
MA0052.10.0163
MA0055.10.00171
MA0057.10.502
MA0058.10.436
MA0059.10.97
MA0060.10.039
MA0061.10.317
MA0062.21.24398e-6
MA0065.20.234
MA0066.10.892
MA0067.10.396
MA0068.16.63606e-4
MA0069.10.731
MA0070.10.285
MA0071.10.212
MA0072.10.67
MA0073.10.439
MA0074.10.435
MA0076.11.04826e-6
MA0077.10.184
MA0078.10.596
MA0079.20.179
MA0080.20.00222
MA0081.10.298
MA0083.10.48
MA0084.10.754
MA0087.10.149
MA0088.10.626
MA0090.12.57356e-4
MA0091.10.0379
MA0092.10.885
MA0093.10.692
MA0099.23.33579e-14
MA0100.10.714
MA0101.10.00415
MA0102.20.748
MA0103.11.32532e-6
MA0104.20.865
MA0105.10.831
MA0106.10.904
MA0107.10.0288
MA0108.20.293
MA0111.10.277
MA0112.20.282
MA0113.10.183
MA0114.10.0635
MA0115.10.947
MA0116.10.0818
MA0117.10.699
MA0119.10.466
MA0122.10.731
MA0124.10.309
MA0125.10.63
MA0131.10.61
MA0135.10.431
MA0136.10.218
MA0137.22.34054e-5
MA0138.20.113
MA0139.12.50149e-4
MA0140.10.38
MA0141.10.158
MA0142.10.91
MA0143.10.479
MA0144.10.00144
MA0145.10.117
MA0146.10.71
MA0147.10.991
MA0148.10.0304
MA0149.10.145
MA0150.17.46974e-5
MA0152.10.208
MA0153.10.499
MA0154.10.974
MA0155.10.163
MA0156.10.0418
MA0157.10.536
MA0159.10.269
MA0160.10.903
MA0162.10.856
MA0163.10.0152
MA0164.10.953
MA0258.10.664
MA0259.10.886



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10733

Novel motifP-value
10.944
100.212
1000.637
1010.237
1020.987
1030.778
1040.814
1050.198
1060.145
1070.569
1080.18
1090.913
110.239
1100.586
1110.198
1120.118
1130.0287
1140.892
1150.132
1160.0954
1170.121
1180.503
1190.653
120.454
1200.279
1210.484
1220.952
1230.0141
1240.082
1250.276
1260.167
1270.444
1280.188
1290.404
130.135
1300.466
1310.208
1320.235
1330.0115
1340.638
1350.614
1360.145
1370.0615
1380.959
1390.201
140.625
1400.113
1410.921
1420.65
1430.76
1440.255
1450.0838
1460.339
1470.785
1480.505
1490.261
150.723
1500.704
1510.748
1520.374
1530.441
1540.499
1550.558
1560.144
1570.398
1580.764
1590.868
160.63
1600.204
1610.839
1620.498
1630.326
1640.416
1650.914
1660.453
1670.252
1680.82
1690.971
170.693
180.61
190.684
20.737
200.0925
210.884
220.235
230.741
240.262
250.299
260.586
270.194
280.135
290.803
30.611
300.249
310.369
323.69568e-4
330.28
340.25
350.0445
360.782
370.982
380.855
390.901
40.301
400.887
410.159
420.618
430.197
440.691
450.125
460.196
470.868
480.966
490.141
50.935
500.537
510.942
520.334
530.303
540.873
550.972
560.679
570.908
580.605
590.65
60.895
600.298
610.195
620.189
630.433
640.537
650.486
660.0046
670.433
680.0525
690.261
70.899
700.23
710.789
720.907
730.925
740.289
750.114
760.841
770.316
780.256
790.0256
80.237
800.787
810.00838
820.00176
830.647
840.493
850.0584
860.567
870.124
880.504
890.76
90.3
900.266
910.0325
920.432
930.965
940.174
950.741
960.579
970.182
980.091
990.413



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10733


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000415 (epithelial cell of gall bladder)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002110 (gallbladder)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0002294 (biliary system)
0001173 (biliary tree)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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