FF:11525-119I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005232 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008198;DRR009070;DRZ000495;DRZ001880;DRZ011845;DRZ013230 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000118 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor1.CNhs12341.11525-119I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11525-119I4 | |id=FF:11525-119I4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000118 | ||
|is_obsolete= | |||
|library_id=CNhs12341 | |||
|library_id_phase_based=2:CNhs12341 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11525 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11525 | |||
|name=Cardiac Myocyte, donor1 | |name=Cardiac Myocyte, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12341,LSID913,release011,COMPLETED | |profile_hcage=CNhs12341,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.842893967232521,0.7348605780971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38299153557005,0,0,0,0,0,0.43835664965042,0,0,1.06095826131353,0,0,0,0,0,0,0,0,0,0,0,0,0.711225077190483,0.369316737692938,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.67174830955597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56012804971302,0,0,0.242182790689335,0.173348565688665,0,0,0,0,-0.0980353512377064,0.73026825103238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.807478373021619,1.18193784649843,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,1.12025609942604,0,0,0,0,0,0.521913061483503,0,0.0622283271664688,-0.143515142523472,0,0,0.032631303194755,0,0,0,0,0,0,0,0,0,0.408194678965912,0,0.485901994329162,0,0,0,0,0,0.23084231502007,0,0.385869988563508,0.963156088249118,0,0,0,0,-0.00208339637508549,0,-0.120879483793741,0.68637176844565,0.328050807849137,0.407818792009057,-0.04680465889238,0,0,0,0.15621284011578,0.238494646659488,0,0,-0.121779851751874,-0.181349618560659,0,0,0.145269964366842,0,-0.901372083617727,0.079728964473856,0,0,0,0,0,0,0,0,0,0,0,0,0,0.951075475350064,0.442103340090098,0,0,0,0,-0.222360099120874,0,0,1.27881735641143,-0.269631976484861,0.0999450857988525,-0.387880634728323,0,-0.302389727009913,0.0647548152111377,0.206948137338655,0.242182790689335,-0.147401849371139,0.729839060658804,0,0.0474786601010813,-0.786272629114012,-0.103899570260289,-0.0358648882373098,0.0080198947217356,-0.0374936571947104,0.115600319767247,0,0,0,-0.76514378723743,0,0,0.541385634849712,-0.0351254928385508,0.452435285470745,0.398974952204512,0.170940629834086,0.654036318013901,0.420377861647654,0.7364783981958,0,0.715330399888813,0,0,0,-0.282481095512694,0.618591259910339,-0.615826173178679,0,0.285114474958087,-0.0683442610773682,0,0.184319862804601,-0.114908773983203,0,0.117051711049196,0.190314705897655,0,0,0,0,0,-0.156670034767066,0.229599793738901,-0.232855561555545,0,0.0977463052740875,0.00431289282063379,0.162624309751739,0,-0.843944673398126,-0.146009897457394,-0.298074152361292,0.0347766398830933,0,0.047381243221498,0.223158911260538,0.346323108036585,0.34669713137733,-0.0584468268118252,0.389784165650304,-0.172066105831849,0.355562666071937,0.655397829492402,0.0979807446349658,-0.0881268324752877,0.161628002268218,0.147955598808106,0.632352096210617,0.274971419332418,0.0691733371142005,0,0.335530979556526,0,0.114627334933862,0.199764810638293,-0.87996613066687,-0.54043375147324,-0.439289374580686,-0.278892146637342,0,0.275666421333979,1.37277572194602,0,-0.18682696315198,0,0,0.385947462583838,-0.697695966512583,-0.211650427864589,0.129167816280044,0,0.241420190936829,0,0,0.0512392963402465,-0.235476037764389,0,-0.0352502536932083,0.310617865995255,-0.604216041195295,-0.115971073434934,0,0,-0.109385792074248,0,1.40450336701766,0.425572285508456,0,-0.0834687780401563,-0.253326341486756,0,0.159534463504983,0,0,-0.177527765965176,0,0.099147156781351,0,0,-0.249881296598824,-0.116628112990133,0,0,0,-0.195265690557764,0,0,0,0,0,0,0,0.602960867693892,0.765422769209587,0,-0.167648489769068,0,0,0,0,0.536314545918477,0,0,0,0.74610196919108,0.333753557512763,-0.12301741567642,0,0,0,0,0.320591143365002,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.217327876755312,0,0,0,1.46053650206476,0,0,0,0,0.046250484754599,0,0,0.585722176134422,0,0.314108272022509,-0.0815818795468414,0,0.096475393076652,0.235051951070616,-0.540528403879394,0,0,0.27496741412859,0,0,-0.116123541424597,0,0,0,0,0,0,0,0,0,0.554777424369312,0,0,0,0,0,0,0,0,0,0,0,-0.086798666650181,-0.0922240566585104,0,0,0,0,0,0,0,0.244051249880335,-0.166865700133036,0,0,0.174201740467956,0,0,0,0,0,0.064888606255235,0,0,0,0,0,-0.0969923612426051,0,0,0,0,1.4697211561942,0,0,0.842893967232521,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412995459883029,1.27407206377172,0,0,0,0,0,0,0,0.756667051120396,0,0,0,0,-0.113884373708977,0,0,0,0.431518161129321,0,-0.160318030086386,0,0,0,0,0,0,0.268157272959239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28530009649698,0,0.682744462392948,0.0847938014441363,0,0,0.283121822030201,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268157272959239,-0.0962259712900034,0,0,0,0,0,0,0,0.43835664965042,0,0,-0.0920328098005262,0,0,0,0,0,0,0.495930606965772,-0.0150631268639085,0.0145900218110296,0,0,0,-0.054385572482455,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38299153557005,0,0,0,0,0,0,0,0,0,0,0,0,0.459910390104325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652703241343772,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11389638282376,0,0,0,0.98082862143535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.536314545918477,0,0,0,0.130885678968083,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983278274087432,0,0.835444147978624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369316737692938,0,0,0,0,0.488677435257558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515481328480562,0,0,0.83905699653626,0,0,0,0,0,0,0,0,0,0,0,0,0.707771757618941,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0.536314545918477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.797750447676902,1.18193784649843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0298218922771353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC6205 | |rna_catalog_number=SC6205 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.53380686354564e-233!GO:0005737;cytoplasm;1.24175951242343e-167!GO:0043226;organelle;7.90580254743901e-131!GO:0043229;intracellular organelle;1.75086207901619e-130!GO:0043231;intracellular membrane-bound organelle;9.07501119521573e-126!GO:0043227;membrane-bound organelle;1.44180170716702e-125!GO:0044444;cytoplasmic part;1.51485403956117e-111!GO:0044422;organelle part;5.21694561342496e-94!GO:0044446;intracellular organelle part;9.65107289185555e-93!GO:0005515;protein binding;5.6438041869051e-71!GO:0044237;cellular metabolic process;6.24915167913625e-67!GO:0032991;macromolecular complex;1.04958858142976e-64!GO:0044238;primary metabolic process;1.54484044868134e-64!GO:0030529;ribonucleoprotein complex;3.52941761082336e-58!GO:0043233;organelle lumen;1.39088009590985e-54!GO:0031974;membrane-enclosed lumen;1.39088009590985e-54!GO:0043170;macromolecule metabolic process;9.04097485123218e-54!GO:0003723;RNA binding;2.81786833274161e-51!GO:0005739;mitochondrion;2.99388236644062e-50!GO:0044428;nuclear part;2.58094262753584e-44!GO:0019538;protein metabolic process;4.52792051505221e-44!GO:0031090;organelle membrane;1.25879768066211e-40!GO:0044260;cellular macromolecule metabolic process;2.48279348427537e-40!GO:0044267;cellular protein metabolic process;6.5445652934326e-39!GO:0005634;nucleus;2.5026410538921e-38!GO:0044429;mitochondrial part;1.86028306836865e-35!GO:0005840;ribosome;6.98570043883574e-34!GO:0006412;translation;1.27877311746239e-33!GO:0005829;cytosol;1.72422985283584e-33!GO:0033036;macromolecule localization;2.76522539126654e-33!GO:0016043;cellular component organization and biogenesis;5.49566811474665e-33!GO:0015031;protein transport;1.17477397097573e-32!GO:0006396;RNA processing;2.37163562804205e-32!GO:0043234;protein complex;4.61330694306566e-32!GO:0009058;biosynthetic process;2.50128160792877e-31!GO:0016071;mRNA metabolic process;9.766729685717e-31!GO:0045184;establishment of protein localization;1.54021502590267e-30!GO:0008104;protein localization;1.98753526331191e-30!GO:0044249;cellular biosynthetic process;2.59525950429786e-29!GO:0031981;nuclear lumen;4.22725250569427e-29!GO:0003735;structural constituent of ribosome;1.46978257115257e-28!GO:0031967;organelle envelope;3.8323946939361e-27!GO:0031975;envelope;6.89945821687045e-27!GO:0033279;ribosomal subunit;1.51148813760276e-26!GO:0008380;RNA splicing;6.50854567167421e-26!GO:0009059;macromolecule biosynthetic process;6.59482975433956e-26!GO:0006397;mRNA processing;1.62262322625461e-24!GO:0010467;gene expression;9.59594628797675e-24!GO:0043283;biopolymer metabolic process;3.2540901577228e-23!GO:0046907;intracellular transport;1.14755068136029e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.23354406099782e-22!GO:0005740;mitochondrial envelope;1.20511726418453e-21!GO:0065003;macromolecular complex assembly;3.16109683870675e-21!GO:0006886;intracellular protein transport;9.54468154760915e-21!GO:0031966;mitochondrial membrane;3.9365316870341e-20!GO:0008134;transcription factor binding;8.25972436769841e-20!GO:0019866;organelle inner membrane;2.17939043051994e-19!GO:0022607;cellular component assembly;5.28570173068081e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.2051481592356e-19!GO:0005743;mitochondrial inner membrane;1.13156330161358e-18!GO:0006119;oxidative phosphorylation;1.26200746756876e-18!GO:0005654;nucleoplasm;1.30677173134271e-18!GO:0000166;nucleotide binding;2.12219756057212e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.41307569999487e-18!GO:0005681;spliceosome;8.69420559534867e-18!GO:0043228;non-membrane-bound organelle;1.30340875368897e-17!GO:0043232;intracellular non-membrane-bound organelle;1.30340875368897e-17!GO:0005783;endoplasmic reticulum;1.69465479451333e-17!GO:0031980;mitochondrial lumen;2.75168163727225e-17!GO:0005759;mitochondrial matrix;2.75168163727225e-17!GO:0044451;nucleoplasm part;4.59717886724122e-17!GO:0048770;pigment granule;1.07261824675909e-16!GO:0042470;melanosome;1.07261824675909e-16!GO:0006996;organelle organization and biogenesis;1.35454724227525e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42847340945732e-16!GO:0016462;pyrophosphatase activity;1.48350858326912e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.74364844019049e-16!GO:0012505;endomembrane system;4.78723731411235e-16!GO:0017111;nucleoside-triphosphatase activity;4.78723731411235e-16!GO:0044455;mitochondrial membrane part;6.51368539845303e-16!GO:0006457;protein folding;9.68401923956133e-16!GO:0005746;mitochondrial respiratory chain;2.90832354773637e-15!GO:0051186;cofactor metabolic process;4.26405426278148e-15!GO:0044445;cytosolic part;4.26405426278148e-15!GO:0005794;Golgi apparatus;9.65191377451637e-15!GO:0016491;oxidoreductase activity;1.598336151244e-14!GO:0044432;endoplasmic reticulum part;1.75361088091295e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.77250998080634e-14!GO:0022618;protein-RNA complex assembly;3.72696801547845e-14!GO:0015935;small ribosomal subunit;5.16602399572034e-14!GO:0048523;negative regulation of cellular process;7.35462802692289e-14!GO:0016192;vesicle-mediated transport;1.6768423848663e-13!GO:0015934;large ribosomal subunit;1.77501784422269e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.81347083835321e-13!GO:0003954;NADH dehydrogenase activity;1.81347083835321e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.81347083835321e-13!GO:0051649;establishment of cellular localization;2.05269713132113e-13!GO:0051641;cellular localization;3.07342969164699e-13!GO:0006366;transcription from RNA polymerase II promoter;4.58361405142719e-13!GO:0017076;purine nucleotide binding;1.22379661721154e-12!GO:0048193;Golgi vesicle transport;1.63651139030902e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.94689460731153e-12!GO:0000502;proteasome complex (sensu Eukaryota);3.00994933277116e-12!GO:0003712;transcription cofactor activity;4.46661420169168e-12!GO:0016874;ligase activity;5.74578697225165e-12!GO:0048519;negative regulation of biological process;8.91846673199772e-12!GO:0030964;NADH dehydrogenase complex (quinone);9.45353340715428e-12!GO:0045271;respiratory chain complex I;9.45353340715428e-12!GO:0005747;mitochondrial respiratory chain complex I;9.45353340715428e-12!GO:0051082;unfolded protein binding;1.09370545334897e-11!GO:0006512;ubiquitin cycle;1.35777229769156e-11!GO:0032553;ribonucleotide binding;1.47377112592655e-11!GO:0032555;purine ribonucleotide binding;1.47377112592655e-11!GO:0006605;protein targeting;1.6945958216961e-11!GO:0044248;cellular catabolic process;2.00755662197067e-11!GO:0006732;coenzyme metabolic process;2.0589382314337e-11!GO:0006259;DNA metabolic process;2.28648498690637e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.10083021769354e-11!GO:0042773;ATP synthesis coupled electron transport;3.10083021769354e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.10083021769354e-11!GO:0005730;nucleolus;4.68890480610871e-11!GO:0030554;adenyl nucleotide binding;4.75139298177956e-11!GO:0043285;biopolymer catabolic process;6.38799284432768e-11!GO:0005761;mitochondrial ribosome;8.25696027081259e-11!GO:0000313;organellar ribosome;8.25696027081259e-11!GO:0008135;translation factor activity, nucleic acid binding;8.6477395238294e-11!GO:0043412;biopolymer modification;9.0226775542014e-11!GO:0044265;cellular macromolecule catabolic process;9.82672405199723e-11!GO:0006913;nucleocytoplasmic transport;1.08695236341188e-10!GO:0016887;ATPase activity;1.56137668963422e-10!GO:0051169;nuclear transport;2.14082786753171e-10!GO:0009057;macromolecule catabolic process;4.20963521141672e-10!GO:0032559;adenyl ribonucleotide binding;4.30936320502188e-10!GO:0016604;nuclear body;4.79496606895544e-10!GO:0009055;electron carrier activity;4.89859681839714e-10!GO:0012501;programmed cell death;7.06043680018782e-10!GO:0006413;translational initiation;8.88712495991213e-10!GO:0005524;ATP binding;9.06202110002429e-10!GO:0008219;cell death;1.01325615020901e-09!GO:0016265;death;1.01325615020901e-09!GO:0006091;generation of precursor metabolites and energy;1.05386687045334e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.22376733111355e-09!GO:0016070;RNA metabolic process;1.44442053273787e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.46743157127305e-09!GO:0005793;ER-Golgi intermediate compartment;1.55360320674524e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.57437935343855e-09!GO:0016564;transcription repressor activity;1.99104187412424e-09!GO:0006464;protein modification process;2.02954557008896e-09!GO:0042623;ATPase activity, coupled;2.07951221023432e-09!GO:0006915;apoptosis;2.41482822891065e-09!GO:0005789;endoplasmic reticulum membrane;2.54695470666594e-09!GO:0003743;translation initiation factor activity;5.63636598386123e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;6.73288451041979e-09!GO:0006446;regulation of translational initiation;9.27011881080725e-09!GO:0019941;modification-dependent protein catabolic process;1.3449927364871e-08!GO:0043632;modification-dependent macromolecule catabolic process;1.3449927364871e-08!GO:0006511;ubiquitin-dependent protein catabolic process;1.46302368674176e-08!GO:0044257;cellular protein catabolic process;1.73692682627753e-08!GO:0004386;helicase activity;1.81069976511449e-08!GO:0042254;ribosome biogenesis and assembly;1.9283352547508e-08!GO:0003676;nucleic acid binding;1.92977678596332e-08!GO:0043687;post-translational protein modification;2.03223146039692e-08!GO:0017038;protein import;2.13956661901943e-08!GO:0016607;nuclear speck;2.35385921522334e-08!GO:0030163;protein catabolic process;2.81401544018922e-08!GO:0009056;catabolic process;4.7881024179273e-08!GO:0031324;negative regulation of cellular metabolic process;5.35024878683634e-08!GO:0008565;protein transporter activity;6.3640727413358e-08!GO:0003714;transcription corepressor activity;7.18683584811582e-08!GO:0008026;ATP-dependent helicase activity;8.25148414932242e-08!GO:0005768;endosome;8.32029676440241e-08!GO:0031252;leading edge;8.94126543379295e-08!GO:0005788;endoplasmic reticulum lumen;1.52897712284212e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.95242888398552e-07!GO:0000375;RNA splicing, via transesterification reactions;1.95242888398552e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.95242888398552e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.03801621120338e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.36284471553095e-07!GO:0051187;cofactor catabolic process;2.44765365569717e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.25050857546163e-07!GO:0009060;aerobic respiration;3.41508407061455e-07!GO:0009892;negative regulation of metabolic process;3.48145656965965e-07!GO:0016787;hydrolase activity;3.76321812941391e-07!GO:0045786;negative regulation of progression through cell cycle;3.94899159496187e-07!GO:0031965;nuclear membrane;4.53388296779272e-07!GO:0051246;regulation of protein metabolic process;4.8925081491357e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;5.62877794304306e-07!GO:0009150;purine ribonucleotide metabolic process;5.83930538850009e-07!GO:0051188;cofactor biosynthetic process;5.83930538850009e-07!GO:0006163;purine nucleotide metabolic process;6.33241893575737e-07!GO:0016481;negative regulation of transcription;6.72402292509358e-07!GO:0009109;coenzyme catabolic process;6.90919858145564e-07!GO:0019829;cation-transporting ATPase activity;7.25346574605065e-07!GO:0015986;ATP synthesis coupled proton transport;8.36304815255122e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.36304815255122e-07!GO:0009152;purine ribonucleotide biosynthetic process;9.15047204315851e-07!GO:0007049;cell cycle;9.3521243604999e-07!GO:0050794;regulation of cellular process;1.00550277848221e-06!GO:0006164;purine nucleotide biosynthetic process;1.05431487312121e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.10830642485093e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.10830642485093e-06!GO:0006606;protein import into nucleus;1.16794448818872e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.18527091308545e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.18527091308545e-06!GO:0006461;protein complex assembly;1.35076397672162e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.41262862219695e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.41262862219695e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.41989857864708e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.44336357382368e-06!GO:0006793;phosphorus metabolic process;1.44336357382368e-06!GO:0006796;phosphate metabolic process;1.44336357382368e-06!GO:0009259;ribonucleotide metabolic process;1.52485464324992e-06!GO:0006323;DNA packaging;1.61574087781311e-06!GO:0045333;cellular respiration;1.62577424104846e-06!GO:0051170;nuclear import;1.71943942568968e-06!GO:0044440;endosomal part;1.73671151747401e-06!GO:0010008;endosome membrane;1.73671151747401e-06!GO:0005635;nuclear envelope;1.76980117020807e-06!GO:0051726;regulation of cell cycle;2.17435336660822e-06!GO:0009141;nucleoside triphosphate metabolic process;2.1949894272611e-06!GO:0008639;small protein conjugating enzyme activity;2.42699274725251e-06!GO:0030120;vesicle coat;2.58788054145212e-06!GO:0030662;coated vesicle membrane;2.58788054145212e-06!GO:0000074;regulation of progression through cell cycle;2.70970947880477e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.74420151479115e-06!GO:0048475;coated membrane;2.85151926625291e-06!GO:0030117;membrane coat;2.85151926625291e-06!GO:0006099;tricarboxylic acid cycle;3.35005770086752e-06!GO:0046356;acetyl-CoA catabolic process;3.35005770086752e-06!GO:0030036;actin cytoskeleton organization and biogenesis;4.15754603261878e-06!GO:0004842;ubiquitin-protein ligase activity;4.47942463841183e-06!GO:0006754;ATP biosynthetic process;4.90907962466654e-06!GO:0006753;nucleoside phosphate metabolic process;4.90907962466654e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.21668770548478e-06!GO:0009260;ribonucleotide biosynthetic process;6.18529390545649e-06!GO:0016310;phosphorylation;6.43184141836564e-06!GO:0046034;ATP metabolic process;6.55295457466394e-06!GO:0043067;regulation of programmed cell death;6.55363603640036e-06!GO:0044453;nuclear membrane part;6.79983940990348e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.03513934930536e-06!GO:0043069;negative regulation of programmed cell death;7.11956731641833e-06!GO:0031982;vesicle;7.17619323375545e-06!GO:0016563;transcription activator activity;8.38924152240099e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.6664789474828e-06!GO:0004812;aminoacyl-tRNA ligase activity;8.6664789474828e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.6664789474828e-06!GO:0031988;membrane-bound vesicle;8.7060334152508e-06!GO:0031410;cytoplasmic vesicle;9.30310098912566e-06!GO:0005770;late endosome;9.54815777348176e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.01600835718507e-05!GO:0042981;regulation of apoptosis;1.02301290360401e-05!GO:0030027;lamellipodium;1.13195650752622e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.14475028436527e-05!GO:0003713;transcription coactivator activity;1.27538502569872e-05!GO:0016853;isomerase activity;1.29964723212398e-05!GO:0043066;negative regulation of apoptosis;1.32729541113007e-05!GO:0016568;chromatin modification;1.34236032304067e-05!GO:0016859;cis-trans isomerase activity;1.38323529694966e-05!GO:0019787;small conjugating protein ligase activity;1.45041590001002e-05!GO:0006752;group transfer coenzyme metabolic process;1.55287000591453e-05!GO:0044431;Golgi apparatus part;1.67843310801602e-05!GO:0006364;rRNA processing;1.931726788749e-05!GO:0006084;acetyl-CoA metabolic process;1.93872976522705e-05!GO:0043038;amino acid activation;2.00150853212777e-05!GO:0006418;tRNA aminoacylation for protein translation;2.00150853212777e-05!GO:0043039;tRNA aminoacylation;2.00150853212777e-05!GO:0030029;actin filament-based process;2.02658355323246e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.17161109693407e-05!GO:0050789;regulation of biological process;2.31797219630317e-05!GO:0019752;carboxylic acid metabolic process;2.39727152660013e-05!GO:0045259;proton-transporting ATP synthase complex;2.61277699317595e-05!GO:0051276;chromosome organization and biogenesis;2.64711403757059e-05!GO:0006082;organic acid metabolic process;2.78221948659268e-05!GO:0043566;structure-specific DNA binding;2.9040775722409e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.95153397699061e-05!GO:0006118;electron transport;3.08424121891304e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.27839935628169e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.42768440844627e-05!GO:0009108;coenzyme biosynthetic process;3.51959622711456e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.73242964930499e-05!GO:0016072;rRNA metabolic process;3.94332685291549e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.22176920518076e-05!GO:0048522;positive regulation of cellular process;4.24678367117641e-05!GO:0006916;anti-apoptosis;4.43714469011128e-05!GO:0046930;pore complex;4.58921046764967e-05!GO:0005643;nuclear pore;4.93025684284294e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.92564877473412e-05!GO:0005798;Golgi-associated vesicle;5.92564877473412e-05!GO:0003924;GTPase activity;6.54844374496479e-05!GO:0016881;acid-amino acid ligase activity;6.6913835389852e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.85239085266772e-05!GO:0005667;transcription factor complex;7.89125028973683e-05!GO:0005839;proteasome core complex (sensu Eukaryota);8.60199266038375e-05!GO:0045892;negative regulation of transcription, DNA-dependent;8.68985018531263e-05!GO:0006403;RNA localization;9.36167399271038e-05!GO:0006333;chromatin assembly or disassembly;9.94514852052868e-05!GO:0003724;RNA helicase activity;0.000103606444900854!GO:0006974;response to DNA damage stimulus;0.000107840798648672!GO:0050657;nucleic acid transport;0.000120280195620754!GO:0051236;establishment of RNA localization;0.000120280195620754!GO:0050658;RNA transport;0.000120280195620754!GO:0005769;early endosome;0.000126050649191559!GO:0051789;response to protein stimulus;0.000126056668870007!GO:0006986;response to unfolded protein;0.000126056668870007!GO:0005773;vacuole;0.000128923219503166!GO:0032446;protein modification by small protein conjugation;0.000136511821679081!GO:0000245;spliceosome assembly;0.000152785641843304!GO:0019899;enzyme binding;0.000159372180033334!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000159673909132941!GO:0016567;protein ubiquitination;0.000161587070172605!GO:0000151;ubiquitin ligase complex;0.000172583900304324!GO:0016044;membrane organization and biogenesis;0.000179237249148197!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00017930432180602!GO:0015399;primary active transmembrane transporter activity;0.00017930432180602!GO:0007243;protein kinase cascade;0.00017930432180602!GO:0006402;mRNA catabolic process;0.000182088932000573!GO:0009719;response to endogenous stimulus;0.000194806705999353!GO:0004298;threonine endopeptidase activity;0.000198302074083568!GO:0016049;cell growth;0.000202949924687515!GO:0009117;nucleotide metabolic process;0.000204037432075953!GO:0008361;regulation of cell size;0.000210435944514324!GO:0005762;mitochondrial large ribosomal subunit;0.000210435944514324!GO:0000315;organellar large ribosomal subunit;0.000210435944514324!GO:0005905;coated pit;0.000213199945344299!GO:0050662;coenzyme binding;0.000213199945344299!GO:0022402;cell cycle process;0.000233909260579045!GO:0045893;positive regulation of transcription, DNA-dependent;0.000237007578908724!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000242717927470339!GO:0003702;RNA polymerase II transcription factor activity;0.000246709888291684!GO:0016740;transferase activity;0.000274407032148409!GO:0065002;intracellular protein transport across a membrane;0.000276817461168637!GO:0048518;positive regulation of biological process;0.000282596167687002!GO:0003697;single-stranded DNA binding;0.000282596167687002!GO:0019843;rRNA binding;0.000295178067499233!GO:0006399;tRNA metabolic process;0.000296158047164537!GO:0043492;ATPase activity, coupled to movement of substances;0.000321178409969654!GO:0005791;rough endoplasmic reticulum;0.000382173532640503!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000393417137324705!GO:0044262;cellular carbohydrate metabolic process;0.000398964781157383!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000499868401417884!GO:0000139;Golgi membrane;0.000503087951329056!GO:0007050;cell cycle arrest;0.000507053632098901!GO:0051101;regulation of DNA binding;0.000507743499891686!GO:0045454;cell redox homeostasis;0.000520331991902778!GO:0001558;regulation of cell growth;0.000525830125628197!GO:0065004;protein-DNA complex assembly;0.000556644203253361!GO:0031968;organelle outer membrane;0.000571613439693534!GO:0008092;cytoskeletal protein binding;0.000589302245067929!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000599207641665257!GO:0008654;phospholipid biosynthetic process;0.000626196559991967!GO:0019867;outer membrane;0.000685609999497621!GO:0043623;cellular protein complex assembly;0.000719164553841211!GO:0005741;mitochondrial outer membrane;0.00072088038753229!GO:0030867;rough endoplasmic reticulum membrane;0.000776441409398453!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0008187864873273!GO:0051128;regulation of cellular component organization and biogenesis;0.000893481572012434!GO:0000323;lytic vacuole;0.000970948069435691!GO:0005764;lysosome;0.000970948069435691!GO:0005048;signal sequence binding;0.00100998395532366!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00107216548877596!GO:0008610;lipid biosynthetic process;0.00119137114302069!GO:0000314;organellar small ribosomal subunit;0.00119675568043554!GO:0005763;mitochondrial small ribosomal subunit;0.00119675568043554!GO:0005885;Arp2/3 protein complex;0.00137237967502525!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00140507669832617!GO:0051028;mRNA transport;0.00149968705465816!GO:0045941;positive regulation of transcription;0.00151718026329251!GO:0003729;mRNA binding;0.00153683036840734!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00157783289415815!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00159817533951524!GO:0044255;cellular lipid metabolic process;0.00172528838119173!GO:0048037;cofactor binding;0.00174298445883677!GO:0051920;peroxiredoxin activity;0.0017679030861207!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00177031694352792!GO:0008186;RNA-dependent ATPase activity;0.00177031694352792!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00177049242375604!GO:0004177;aminopeptidase activity;0.00187829808083405!GO:0051427;hormone receptor binding;0.00194185447429406!GO:0051287;NAD binding;0.00194484230720996!GO:0006979;response to oxidative stress;0.00202939042555658!GO:0006281;DNA repair;0.00206017378250588!GO:0040008;regulation of growth;0.00208032011776879!GO:0016197;endosome transport;0.00227318786845342!GO:0006613;cotranslational protein targeting to membrane;0.00241265803217696!GO:0033116;ER-Golgi intermediate compartment membrane;0.00255011294879806!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00261505894356511!GO:0006897;endocytosis;0.0026222425573008!GO:0010324;membrane invagination;0.0026222425573008!GO:0030137;COPI-coated vesicle;0.00263464460187935!GO:0051252;regulation of RNA metabolic process;0.00268759960528793!GO:0030663;COPI coated vesicle membrane;0.00279587603161433!GO:0030126;COPI vesicle coat;0.00279587603161433!GO:0003690;double-stranded DNA binding;0.00289342032819417!GO:0008250;oligosaccharyl transferase complex;0.00306167837315462!GO:0008154;actin polymerization and/or depolymerization;0.00312584587427145!GO:0006629;lipid metabolic process;0.00316772871867395!GO:0004576;oligosaccharyl transferase activity;0.00351439244377352!GO:0035257;nuclear hormone receptor binding;0.00351439244377352!GO:0065007;biological regulation;0.00355320927882687!GO:0043488;regulation of mRNA stability;0.00355320927882687!GO:0043487;regulation of RNA stability;0.00355320927882687!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00355622214705481!GO:0033043;regulation of organelle organization and biogenesis;0.00355622214705481!GO:0030132;clathrin coat of coated pit;0.00368578330727578!GO:0007264;small GTPase mediated signal transduction;0.00369276972993798!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0037129500749932!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0037129500749932!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0037129500749932!GO:0031902;late endosome membrane;0.00373146494494241!GO:0005813;centrosome;0.00380373489210307!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00380373489210307!GO:0008139;nuclear localization sequence binding;0.0040000459198538!GO:0005525;GTP binding;0.00413932196846971!GO:0048468;cell development;0.00421621310570756!GO:0030118;clathrin coat;0.00435968505233968!GO:0030133;transport vesicle;0.00464195815583263!GO:0004004;ATP-dependent RNA helicase activity;0.00486290909942292!GO:0009165;nucleotide biosynthetic process;0.0049025671484968!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0049025671484968!GO:0015002;heme-copper terminal oxidase activity;0.0049025671484968!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0049025671484968!GO:0004129;cytochrome-c oxidase activity;0.0049025671484968!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00491960151419615!GO:0000785;chromatin;0.00505658410570986!GO:0016126;sterol biosynthetic process;0.00508022983562052!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00517518606989816!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00522164834616978!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0053346090878597!GO:0009081;branched chain family amino acid metabolic process;0.00543791437930616!GO:0030031;cell projection biogenesis;0.00556628475260419!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00573117952149325!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00573117952149325!GO:0017166;vinculin binding;0.00573117952149325!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00587736467797743!GO:0005581;collagen;0.00589678641648049!GO:0006401;RNA catabolic process;0.00603947608993295!GO:0006635;fatty acid beta-oxidation;0.00605052237222916!GO:0006607;NLS-bearing substrate import into nucleus;0.00607039948584735!GO:0006892;post-Golgi vesicle-mediated transport;0.00609849611121215!GO:0022890;inorganic cation transmembrane transporter activity;0.00612338252303894!GO:0006891;intra-Golgi vesicle-mediated transport;0.00620214248675018!GO:0001726;ruffle;0.00627742718053693!GO:0003779;actin binding;0.00638518967905285!GO:0016779;nucleotidyltransferase activity;0.00665977001359749!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0067083381147154!GO:0030176;integral to endoplasmic reticulum membrane;0.00672197022159544!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00696882196297192!GO:0031625;ubiquitin protein ligase binding;0.00706711472027533!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0071720467529461!GO:0031901;early endosome membrane;0.00726520937659432!GO:0050749;apolipoprotein E receptor binding;0.00733961225265032!GO:0043021;ribonucleoprotein binding;0.00734500427429612!GO:0032561;guanyl ribonucleotide binding;0.00742535417785331!GO:0019001;guanyl nucleotide binding;0.00742535417785331!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00753812797910244!GO:0051168;nuclear export;0.00760721840156677!GO:0008286;insulin receptor signaling pathway;0.0076518038478518!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0079727768676762!GO:0006740;NADPH regeneration;0.0080094207725346!GO:0006098;pentose-phosphate shunt;0.0080094207725346!GO:0016860;intramolecular oxidoreductase activity;0.00814512108364819!GO:0005815;microtubule organizing center;0.00827998410695219!GO:0009967;positive regulation of signal transduction;0.00832544625417499!GO:0006778;porphyrin metabolic process;0.00832544625417499!GO:0033013;tetrapyrrole metabolic process;0.00832544625417499!GO:0043414;biopolymer methylation;0.00860547778537128!GO:0018196;peptidyl-asparagine modification;0.00908623490288023!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00908623490288023!GO:0006950;response to stress;0.00924336061192529!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00929083124795038!GO:0006790;sulfur metabolic process;0.00938349680870642!GO:0051270;regulation of cell motility;0.00954494128776779!GO:0000059;protein import into nucleus, docking;0.00959619221044614!GO:0030119;AP-type membrane coat adaptor complex;0.00963764573769412!GO:0008629;induction of apoptosis by intracellular signals;0.00972106379775396!GO:0016363;nuclear matrix;0.00999337950824785!GO:0006612;protein targeting to membrane;0.0101545512644858!GO:0008238;exopeptidase activity;0.0102622881738031!GO:0008047;enzyme activator activity;0.0102622881738031!GO:0035035;histone acetyltransferase binding;0.0104470275702786!GO:0051098;regulation of binding;0.011312839108128!GO:0065009;regulation of a molecular function;0.011468396412918!GO:0005862;muscle thin filament tropomyosin;0.0117851762664506!GO:0048471;perinuclear region of cytoplasm;0.0119777862787205!GO:0046483;heterocycle metabolic process;0.0120614118939475!GO:0040029;regulation of gene expression, epigenetic;0.0127824619223036!GO:0006334;nucleosome assembly;0.0127824619223036!GO:0030131;clathrin adaptor complex;0.0127824619223036!GO:0051087;chaperone binding;0.0135779108308647!GO:0031497;chromatin assembly;0.0135779108308647!GO:0019222;regulation of metabolic process;0.014440122757861!GO:0006693;prostaglandin metabolic process;0.0146432277762108!GO:0006692;prostanoid metabolic process;0.0146432277762108!GO:0006730;one-carbon compound metabolic process;0.0147415557781797!GO:0030032;lamellipodium biogenesis;0.0147415557781797!GO:0033673;negative regulation of kinase activity;0.0147415557781797!GO:0006469;negative regulation of protein kinase activity;0.0147415557781797!GO:0031072;heat shock protein binding;0.0149065536346692!GO:0003711;transcription elongation regulator activity;0.0149989331352929!GO:0045045;secretory pathway;0.0150776956907098!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0150776956907098!GO:0043681;protein import into mitochondrion;0.0151479851668357!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0152826080450676!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0153368615695646!GO:0000287;magnesium ion binding;0.0153368615695646!GO:0006509;membrane protein ectodomain proteolysis;0.0156945625433518!GO:0033619;membrane protein proteolysis;0.0156945625433518!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0159749500653292!GO:0007265;Ras protein signal transduction;0.0168582176536494!GO:0006260;DNA replication;0.0169967751756378!GO:0006414;translational elongation;0.0170228750386118!GO:0003756;protein disulfide isomerase activity;0.0170863457156545!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0170863457156545!GO:0031529;ruffle organization and biogenesis;0.0171797281021355!GO:0043284;biopolymer biosynthetic process;0.0171797281021355!GO:0006739;NADP metabolic process;0.0171797281021355!GO:0007010;cytoskeleton organization and biogenesis;0.017438828942906!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0176848796154207!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0176848796154207!GO:0051271;negative regulation of cell motility;0.0180784013835578!GO:0007004;telomere maintenance via telomerase;0.0184198769372553!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0185818697121927!GO:0015630;microtubule cytoskeleton;0.0186257440102719!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0190105299254661!GO:0030659;cytoplasmic vesicle membrane;0.0191481842823454!GO:0030518;steroid hormone receptor signaling pathway;0.0192312715448948!GO:0048146;positive regulation of fibroblast proliferation;0.0192785466064539!GO:0004674;protein serine/threonine kinase activity;0.0193514277704666!GO:0004364;glutathione transferase activity;0.0198382711727121!GO:0005938;cell cortex;0.0198550511968992!GO:0005777;peroxisome;0.0200813111640878!GO:0042579;microbody;0.0200813111640878!GO:0035258;steroid hormone receptor binding;0.0200813111640878!GO:0042168;heme metabolic process;0.0200987587736212!GO:0005869;dynactin complex;0.0201075754754396!GO:0051348;negative regulation of transferase activity;0.0203630586664046!GO:0032200;telomere organization and biogenesis;0.0206404362430353!GO:0000723;telomere maintenance;0.0206404362430353!GO:0046822;regulation of nucleocytoplasmic transport;0.0206404362430353!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0208186029025353!GO:0030145;manganese ion binding;0.0208303851953313!GO:0045334;clathrin-coated endocytic vesicle;0.0221885794416915!GO:0030041;actin filament polymerization;0.0222684501497992!GO:0032259;methylation;0.0222684501497992!GO:0005774;vacuolar membrane;0.0224919985581116!GO:0051100;negative regulation of binding;0.0226777964837235!GO:0046474;glycerophospholipid biosynthetic process;0.0236752240615997!GO:0000339;RNA cap binding;0.0237824241026415!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0243179618260549!GO:0006338;chromatin remodeling;0.0243179618260549!GO:0042802;identical protein binding;0.0247296050582829!GO:0008064;regulation of actin polymerization and/or depolymerization;0.02479848450547!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0255071055700439!GO:0006779;porphyrin biosynthetic process;0.025894437467373!GO:0033014;tetrapyrrole biosynthetic process;0.025894437467373!GO:0000096;sulfur amino acid metabolic process;0.0259291716377453!GO:0006417;regulation of translation;0.0271901101170385!GO:0031124;mRNA 3'-end processing;0.0273496505889771!GO:0022415;viral reproductive process;0.0281712647116235!GO:0006695;cholesterol biosynthetic process;0.0281915232370585!GO:0006376;mRNA splice site selection;0.0281915232370585!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0281915232370585!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0281915232370585!GO:0046813;virion attachment, binding of host cell surface receptor;0.0281915232370585!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0281915232370585!GO:0045792;negative regulation of cell size;0.0281983162269138!GO:0032535;regulation of cellular component size;0.028241107830517!GO:0008147;structural constituent of bone;0.0286885926469226!GO:0006520;amino acid metabolic process;0.0290029845011461!GO:0016408;C-acyltransferase activity;0.0290029845011461!GO:0031272;regulation of pseudopodium formation;0.0290029845011461!GO:0031269;pseudopodium formation;0.0290029845011461!GO:0031344;regulation of cell projection organization and biogenesis;0.0290029845011461!GO:0031268;pseudopodium organization and biogenesis;0.0290029845011461!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0290029845011461!GO:0031274;positive regulation of pseudopodium formation;0.0290029845011461!GO:0030134;ER to Golgi transport vesicle;0.0301359707359311!GO:0030658;transport vesicle membrane;0.0301751915005824!GO:0008287;protein serine/threonine phosphatase complex;0.0305148801433574!GO:0015992;proton transport;0.0305148801433574!GO:0003899;DNA-directed RNA polymerase activity;0.0309384152300829!GO:0005100;Rho GTPase activator activity;0.0309384152300829!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0317117537787498!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0317763473212806!GO:0030832;regulation of actin filament length;0.0320978401499939!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0323364700781561!GO:0006818;hydrogen transport;0.0325004282792649!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0326885593690977!GO:0030308;negative regulation of cell growth;0.0339587154255285!GO:0005720;nuclear heterochromatin;0.0343931042107548!GO:0048144;fibroblast proliferation;0.0344811933056242!GO:0048145;regulation of fibroblast proliferation;0.0344811933056242!GO:0032787;monocarboxylic acid metabolic process;0.0352676539182729!GO:0001666;response to hypoxia;0.0356292792357073!GO:0009083;branched chain family amino acid catabolic process;0.0363830739060454!GO:0040012;regulation of locomotion;0.0368068470836133!GO:0046426;negative regulation of JAK-STAT cascade;0.0371840321728978!GO:0040013;negative regulation of locomotion;0.0377105422222954!GO:0043392;negative regulation of DNA binding;0.0379431076854948!GO:0030125;clathrin vesicle coat;0.0379460217623184!GO:0030665;clathrin coated vesicle membrane;0.0379460217623184!GO:0009893;positive regulation of metabolic process;0.0380121642943048!GO:0016407;acetyltransferase activity;0.0389005942084342!GO:0044437;vacuolar part;0.0390673450757353!GO:0016125;sterol metabolic process;0.0394256567944389!GO:0001516;prostaglandin biosynthetic process;0.0398428831367963!GO:0046457;prostanoid biosynthetic process;0.0398428831367963!GO:0005684;U2-dependent spliceosome;0.0400918396459193!GO:0040011;locomotion;0.0401928562058154!GO:0030128;clathrin coat of endocytic vesicle;0.0406109491118259!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0406109491118259!GO:0030122;AP-2 adaptor complex;0.0406109491118259!GO:0016581;NuRD complex;0.0408294402540896!GO:0030522;intracellular receptor-mediated signaling pathway;0.0410617050366872!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0413485106894241!GO:0009966;regulation of signal transduction;0.0413485106894241!GO:0006749;glutathione metabolic process;0.0415713393734969!GO:0005765;lysosomal membrane;0.0421205052689147!GO:0046467;membrane lipid biosynthetic process;0.0422906029810084!GO:0030660;Golgi-associated vesicle membrane;0.0423549324573624!GO:0004860;protein kinase inhibitor activity;0.0423549324573624!GO:0016579;protein deubiquitination;0.0423739340427068!GO:0006631;fatty acid metabolic process;0.0427350042716907!GO:0043407;negative regulation of MAP kinase activity;0.0428267009187952!GO:0033559;unsaturated fatty acid metabolic process;0.0433019786931996!GO:0006636;unsaturated fatty acid biosynthetic process;0.0433019786931996!GO:0016301;kinase activity;0.0433019786931996!GO:0015036;disulfide oxidoreductase activity;0.0433019786931996!GO:0005583;fibrillar collagen;0.0441736436510885!GO:0045926;negative regulation of growth;0.0441984443174599!GO:0005694;chromosome;0.04457799967509!GO:0030100;regulation of endocytosis;0.0449938542426868!GO:0030127;COPII vesicle coat;0.0449938542426868!GO:0012507;ER to Golgi transport vesicle membrane;0.0449938542426868!GO:0006595;polyamine metabolic process;0.0459122417886472!GO:0000278;mitotic cell cycle;0.0459122417886472!GO:0051539;4 iron, 4 sulfur cluster binding;0.0459444532033324!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0465744670012876!GO:0007021;tubulin folding;0.0474719667454409!GO:0031461;cullin-RING ubiquitin ligase complex;0.0475097084647444!GO:0004287;prolyl oligopeptidase activity;0.0475350514652953!GO:0051329;interphase of mitotic cell cycle;0.0477172128560827!GO:0044433;cytoplasmic vesicle part;0.0491006992788804!GO:0030336;negative regulation of cell migration;0.0491626322080273 | |||
|sample_id=11525 | |sample_id=11525 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=heart | |sample_tissue=heart | ||
|top_motifs=AIRE:1.75555642959;NKX2-1,4:1.73542834555;FOXD3:1.7266243911;MYBL2:1.69371234907;HOX{A4,D4}:1.64783205505;STAT2,4,6:1.60431637015;POU6F1:1.59653679403;GLI1..3:1.58811281156;EP300:1.5328651686;HOX{A5,B5}:1.52549895317;EVI1:1.51954867568;DBP:1.48087585409;EBF1:1.40270867683;FOXA2:1.33276530567;AR:1.30499576809;TEF:1.30266495969;RXRA_VDR{dimer}:1.20405035867;STAT5{A,B}:1.18146497152;TLX1..3_NFIC{dimer}:1.16881836158;PATZ1:1.15946077024;NR3C1:1.14436504027;KLF4:1.12688073692;SMAD1..7,9:1.09341039322;GTF2I:1.09284330542;MYFfamily:1.03300283313;GATA4:1.0205048036;NKX6-1,2:1.00258809888;XBP1:0.981521317913;CDX1,2,4:0.967089923628;MTE{core}:0.959864371391;TFAP4:0.958145471494;SRF:0.939361109225;PDX1:0.937609179674;MAZ:0.905985006486;HMGA1,2:0.887549687586;RXR{A,B,G}:0.886281288709;TEAD1:0.875381264338;VSX1,2:0.839461089095;LHX3,4:0.816708006847;ZNF238:0.810383474782;RORA:0.792048777996;PAX3,7:0.782626123121;ALX4:0.761710398965;EN1,2:0.756211454983;POU3F1..4:0.73519091061;MED-1{core}:0.719988080509;UFEwm:0.699806879082;GFI1B:0.677812279337;FOXO1,3,4:0.669127058129;ZNF423:0.664750714933;ZNF384:0.658122062435;FOXP3:0.652102412946;ATF6:0.634609363481;ZIC1..3:0.593683535546;PRDM1:0.569640795659;NKX3-1:0.567984730153;NR6A1:0.565902380793;AHR_ARNT_ARNT2:0.55973587752;NFATC1..3:0.543702861167;TFCP2:0.529511884637;RREB1:0.523925015611;SPZ1:0.522660499184;ONECUT1,2:0.478883447126;HIC1:0.477325650099;MZF1:0.441998279766;ZNF148:0.438679115045;GTF2A1,2:0.416147423256;RBPJ:0.381624830396;GZF1:0.37639754977;ZBTB16:0.359617965304;TAL1_TCF{3,4,12}:0.358061496021;ZFP161:0.343017372596;HMX1:0.324209170264;SOX17:0.313729297992;HNF1A:0.279471573794;CDC5L:0.270973980057;NHLH1,2:0.267313874023;PAX6:0.266929580835;ESR1:0.260529546076;NR1H4:0.244005215717;TP53:0.216201913662;NFE2L1:0.211391750442;HNF4A_NR2F1,2:0.2113251382;T:0.204829108816;NFE2L2:0.199118712635;ADNP_IRX_SIX_ZHX:0.184030603099;HAND1,2:0.175423636404;FOX{D1,D2}:0.158434665833;ZBTB6:0.150449478149;FOXL1:0.146846051357;HSF1,2:0.140607428735;EGR1..3:0.129089330644;NANOG:0.116479329899;HLF:0.113529914138;IRF1,2:0.0932057684428;IKZF2:0.0928024186863;REST:0.0890889402928;GATA6:0.0628006127608;TFAP2{A,C}:0.0612945060463;IKZF1:0.0582330888094;BPTF:0.0472810361853;NFIX:0.00321253450658;IRF7:-0.0128281946175;MAFB:-0.0143968526285;CUX2:-0.0362600155236;MTF1:-0.0448609647095;NKX2-3_NKX2-5:-0.064088577468;TFAP2B:-0.0865239651775;NANOG{mouse}:-0.0988595721622;MEF2{A,B,C,D}:-0.103448103354;FOXM1:-0.110111155104;HOXA9_MEIS1:-0.136307355374;TFDP1:-0.143346344734;HBP1_HMGB_SSRP1_UBTF:-0.178010712711;PAX8:-0.180048200606;TLX2:-0.182913655426;RFX1:-0.18672303645;TBX4,5:-0.195551759941;NFE2:-0.205682462648;bHLH_family:-0.225347718375;BREu{core}:-0.237156158281;BACH2:-0.2445630267;TOPORS:-0.257018111253;RUNX1..3:-0.257200630923;PAX1,9:-0.258288768454;NFKB1_REL_RELA:-0.266780039564;TGIF1:-0.280084088997;DMAP1_NCOR{1,2}_SMARC:-0.289536436962;FOS_FOS{B,L1}_JUN{B,D}:-0.299244844065;PRRX1,2:-0.300880697686;PAX5:-0.325637733882;CRX:-0.34280584462;PAX4:-0.351157587802;ETS1,2:-0.382404924132;ESRRA:-0.38385836488;POU2F1..3:-0.391201800783;SOX5:-0.392747607597;TBP:-0.399560775818;SOX2:-0.40267222149;FOSL2:-0.405642443114;FOX{F1,F2,J1}:-0.448968131056;NFIL3:-0.450260672528;RFX2..5_RFXANK_RFXAP:-0.452313296151;SREBF1,2:-0.453506816583;ATF5_CREB3:-0.455420668613;LEF1_TCF7_TCF7L1,2:-0.456365689026;SP1:-0.465439920935;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.470687844346;POU5F1:-0.475115052033;NKX2-2,8:-0.475170133306;FOXP1:-0.48394871527;ATF4:-0.53934201085;SPIB:-0.561194147805;SPI1:-0.57500261784;PAX2:-0.605441618935;FOXQ1:-0.646466795879;JUN:-0.650671442492;CEBPA,B_DDIT3:-0.679562495528;SOX{8,9,10}:-0.711862957807;GCM1,2:-0.739331789341;XCPE1{core}:-0.804460513863;YY1:-0.840464594563;PITX1..3:-0.873797712093;NKX3-2:-0.92610030216;STAT1,3:-0.939636025633;ARID5B:-0.95296799489;E2F1..5:-1.01207778642;GFI1:-1.01994332392;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03163547755;HES1:-1.06696185127;NR5A1,2:-1.10642269138;ZEB1:-1.10925588927;SNAI1..3:-1.13579517926;HIF1A:-1.20088600857;OCT4_SOX2{dimer}:-1.20491436467;ATF2:-1.20956530136;FOX{I1,J2}:-1.23628032973;LMO2:-1.23840595669;ELF1,2,4:-1.24565543588;PBX1:-1.3000647209;ZNF143:-1.34150477667;NRF1:-1.41996062522;MYB:-1.4469962535;PPARG:-1.47989946873;FOXN1:-1.52618983365;POU1F1:-1.53107568734;MYOD1:-1.62497084323;ALX1:-1.6923867479;HOX{A6,A7,B6,B7}:-1.69486091848;CREB1:-1.74524857741;NFY{A,B,C}:-1.7701778948;ELK1,4_GABP{A,B1}:-2.13453515078 | |top_motifs=AIRE:1.75555642959;NKX2-1,4:1.73542834555;FOXD3:1.7266243911;MYBL2:1.69371234907;HOX{A4,D4}:1.64783205505;STAT2,4,6:1.60431637015;POU6F1:1.59653679403;GLI1..3:1.58811281156;EP300:1.5328651686;HOX{A5,B5}:1.52549895317;EVI1:1.51954867568;DBP:1.48087585409;EBF1:1.40270867683;FOXA2:1.33276530567;AR:1.30499576809;TEF:1.30266495969;RXRA_VDR{dimer}:1.20405035867;STAT5{A,B}:1.18146497152;TLX1..3_NFIC{dimer}:1.16881836158;PATZ1:1.15946077024;NR3C1:1.14436504027;KLF4:1.12688073692;SMAD1..7,9:1.09341039322;GTF2I:1.09284330542;MYFfamily:1.03300283313;GATA4:1.0205048036;NKX6-1,2:1.00258809888;XBP1:0.981521317913;CDX1,2,4:0.967089923628;MTE{core}:0.959864371391;TFAP4:0.958145471494;SRF:0.939361109225;PDX1:0.937609179674;MAZ:0.905985006486;HMGA1,2:0.887549687586;RXR{A,B,G}:0.886281288709;TEAD1:0.875381264338;VSX1,2:0.839461089095;LHX3,4:0.816708006847;ZNF238:0.810383474782;RORA:0.792048777996;PAX3,7:0.782626123121;ALX4:0.761710398965;EN1,2:0.756211454983;POU3F1..4:0.73519091061;MED-1{core}:0.719988080509;UFEwm:0.699806879082;GFI1B:0.677812279337;FOXO1,3,4:0.669127058129;ZNF423:0.664750714933;ZNF384:0.658122062435;FOXP3:0.652102412946;ATF6:0.634609363481;ZIC1..3:0.593683535546;PRDM1:0.569640795659;NKX3-1:0.567984730153;NR6A1:0.565902380793;AHR_ARNT_ARNT2:0.55973587752;NFATC1..3:0.543702861167;TFCP2:0.529511884637;RREB1:0.523925015611;SPZ1:0.522660499184;ONECUT1,2:0.478883447126;HIC1:0.477325650099;MZF1:0.441998279766;ZNF148:0.438679115045;GTF2A1,2:0.416147423256;RBPJ:0.381624830396;GZF1:0.37639754977;ZBTB16:0.359617965304;TAL1_TCF{3,4,12}:0.358061496021;ZFP161:0.343017372596;HMX1:0.324209170264;SOX17:0.313729297992;HNF1A:0.279471573794;CDC5L:0.270973980057;NHLH1,2:0.267313874023;PAX6:0.266929580835;ESR1:0.260529546076;NR1H4:0.244005215717;TP53:0.216201913662;NFE2L1:0.211391750442;HNF4A_NR2F1,2:0.2113251382;T:0.204829108816;NFE2L2:0.199118712635;ADNP_IRX_SIX_ZHX:0.184030603099;HAND1,2:0.175423636404;FOX{D1,D2}:0.158434665833;ZBTB6:0.150449478149;FOXL1:0.146846051357;HSF1,2:0.140607428735;EGR1..3:0.129089330644;NANOG:0.116479329899;HLF:0.113529914138;IRF1,2:0.0932057684428;IKZF2:0.0928024186863;REST:0.0890889402928;GATA6:0.0628006127608;TFAP2{A,C}:0.0612945060463;IKZF1:0.0582330888094;BPTF:0.0472810361853;NFIX:0.00321253450658;IRF7:-0.0128281946175;MAFB:-0.0143968526285;CUX2:-0.0362600155236;MTF1:-0.0448609647095;NKX2-3_NKX2-5:-0.064088577468;TFAP2B:-0.0865239651775;NANOG{mouse}:-0.0988595721622;MEF2{A,B,C,D}:-0.103448103354;FOXM1:-0.110111155104;HOXA9_MEIS1:-0.136307355374;TFDP1:-0.143346344734;HBP1_HMGB_SSRP1_UBTF:-0.178010712711;PAX8:-0.180048200606;TLX2:-0.182913655426;RFX1:-0.18672303645;TBX4,5:-0.195551759941;NFE2:-0.205682462648;bHLH_family:-0.225347718375;BREu{core}:-0.237156158281;BACH2:-0.2445630267;TOPORS:-0.257018111253;RUNX1..3:-0.257200630923;PAX1,9:-0.258288768454;NFKB1_REL_RELA:-0.266780039564;TGIF1:-0.280084088997;DMAP1_NCOR{1,2}_SMARC:-0.289536436962;FOS_FOS{B,L1}_JUN{B,D}:-0.299244844065;PRRX1,2:-0.300880697686;PAX5:-0.325637733882;CRX:-0.34280584462;PAX4:-0.351157587802;ETS1,2:-0.382404924132;ESRRA:-0.38385836488;POU2F1..3:-0.391201800783;SOX5:-0.392747607597;TBP:-0.399560775818;SOX2:-0.40267222149;FOSL2:-0.405642443114;FOX{F1,F2,J1}:-0.448968131056;NFIL3:-0.450260672528;RFX2..5_RFXANK_RFXAP:-0.452313296151;SREBF1,2:-0.453506816583;ATF5_CREB3:-0.455420668613;LEF1_TCF7_TCF7L1,2:-0.456365689026;SP1:-0.465439920935;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.470687844346;POU5F1:-0.475115052033;NKX2-2,8:-0.475170133306;FOXP1:-0.48394871527;ATF4:-0.53934201085;SPIB:-0.561194147805;SPI1:-0.57500261784;PAX2:-0.605441618935;FOXQ1:-0.646466795879;JUN:-0.650671442492;CEBPA,B_DDIT3:-0.679562495528;SOX{8,9,10}:-0.711862957807;GCM1,2:-0.739331789341;XCPE1{core}:-0.804460513863;YY1:-0.840464594563;PITX1..3:-0.873797712093;NKX3-2:-0.92610030216;STAT1,3:-0.939636025633;ARID5B:-0.95296799489;E2F1..5:-1.01207778642;GFI1:-1.01994332392;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03163547755;HES1:-1.06696185127;NR5A1,2:-1.10642269138;ZEB1:-1.10925588927;SNAI1..3:-1.13579517926;HIF1A:-1.20088600857;OCT4_SOX2{dimer}:-1.20491436467;ATF2:-1.20956530136;FOX{I1,J2}:-1.23628032973;LMO2:-1.23840595669;ELF1,2,4:-1.24565543588;PBX1:-1.3000647209;ZNF143:-1.34150477667;NRF1:-1.41996062522;MYB:-1.4469962535;PPARG:-1.47989946873;FOXN1:-1.52618983365;POU1F1:-1.53107568734;MYOD1:-1.62497084323;ALX1:-1.6923867479;HOX{A6,A7,B6,B7}:-1.69486091848;CREB1:-1.74524857741;NFY{A,B,C}:-1.7701778948;ELK1,4_GABP{A,B1}:-2.13453515078 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11525-119I4;search_select_hide=table117:FF:11525-119I4 | |||
}} | }} | ||
Latest revision as of 18:06, 4 June 2020
| Name: | Cardiac Myocyte, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12341 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12341
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12341
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.89 |
| 10 | 10 | 0.889 |
| 100 | 100 | 0.584 |
| 101 | 101 | 0.654 |
| 102 | 102 | 0.145 |
| 103 | 103 | 0.0584 |
| 104 | 104 | 0.97 |
| 105 | 105 | 0.79 |
| 106 | 106 | 0.0122 |
| 107 | 107 | 3.57899e-4 |
| 108 | 108 | 0.477 |
| 109 | 109 | 0.406 |
| 11 | 11 | 0.835 |
| 110 | 110 | 0.753 |
| 111 | 111 | 0.968 |
| 112 | 112 | 0.176 |
| 113 | 113 | 0.784 |
| 114 | 114 | 0.124 |
| 115 | 115 | 0.414 |
| 116 | 116 | 0.722 |
| 117 | 117 | 0.585 |
| 118 | 118 | 0.363 |
| 119 | 119 | 0.146 |
| 12 | 12 | 0.652 |
| 120 | 120 | 0.908 |
| 121 | 121 | 0.886 |
| 122 | 122 | 0.185 |
| 123 | 123 | 0.478 |
| 124 | 124 | 0.378 |
| 125 | 125 | 0.395 |
| 126 | 126 | 0.595 |
| 127 | 127 | 0.527 |
| 128 | 128 | 7.27608e-4 |
| 129 | 129 | 0.257 |
| 13 | 13 | 0.324 |
| 130 | 130 | 0.567 |
| 131 | 131 | 0.646 |
| 132 | 132 | 0.716 |
| 133 | 133 | 0.514 |
| 134 | 134 | 0.463 |
| 135 | 135 | 0.867 |
| 136 | 136 | 0.0701 |
| 137 | 137 | 0.741 |
| 138 | 138 | 0.139 |
| 139 | 139 | 0.0245 |
| 14 | 14 | 0.59 |
| 140 | 140 | 0.00595 |
| 141 | 141 | 0.633 |
| 142 | 142 | 0.76 |
| 143 | 143 | 0.493 |
| 144 | 144 | 0.101 |
| 145 | 145 | 0.288 |
| 146 | 146 | 0.606 |
| 147 | 147 | 0.105 |
| 148 | 148 | 0.589 |
| 149 | 149 | 0.0337 |
| 15 | 15 | 0.106 |
| 150 | 150 | 0.358 |
| 151 | 151 | 0.143 |
| 152 | 152 | 0.848 |
| 153 | 153 | 0.193 |
| 154 | 154 | 0.894 |
| 155 | 155 | 0.253 |
| 156 | 156 | 0.678 |
| 157 | 157 | 0.313 |
| 158 | 158 | 0.113 |
| 159 | 159 | 0.76 |
| 16 | 16 | 0.222 |
| 160 | 160 | 0.0279 |
| 161 | 161 | 0.619 |
| 162 | 162 | 0.404 |
| 163 | 163 | 0.492 |
| 164 | 164 | 0.55 |
| 165 | 165 | 0.78 |
| 166 | 166 | 0.0257 |
| 167 | 167 | 0.595 |
| 168 | 168 | 0.219 |
| 169 | 169 | 0.0712 |
| 17 | 17 | 0.852 |
| 18 | 18 | 0.17 |
| 19 | 19 | 0.0745 |
| 2 | 2 | 0.078 |
| 20 | 20 | 0.152 |
| 21 | 21 | 0.342 |
| 22 | 22 | 0.154 |
| 23 | 23 | 0.0016 |
| 24 | 24 | 0.277 |
| 25 | 25 | 0.333 |
| 26 | 26 | 0.174 |
| 27 | 27 | 0.376 |
| 28 | 28 | 0.498 |
| 29 | 29 | 0.816 |
| 3 | 3 | 0.518 |
| 30 | 30 | 0.494 |
| 31 | 31 | 0.338 |
| 32 | 32 | 6.53836e-6 |
| 33 | 33 | 0.537 |
| 34 | 34 | 0.238 |
| 35 | 35 | 0.236 |
| 36 | 36 | 0.0506 |
| 37 | 37 | 0.767 |
| 38 | 38 | 0.863 |
| 39 | 39 | 0.231 |
| 4 | 4 | 0.788 |
| 40 | 40 | 0.0112 |
| 41 | 41 | 0.925 |
| 42 | 42 | 0.748 |
| 43 | 43 | 0.199 |
| 44 | 44 | 0.15 |
| 45 | 45 | 0.298 |
| 46 | 46 | 0.0597 |
| 47 | 47 | 0.796 |
| 48 | 48 | 0.47 |
| 49 | 49 | 0.223 |
| 5 | 5 | 0.146 |
| 50 | 50 | 0.77 |
| 51 | 51 | 0.609 |
| 52 | 52 | 0.18 |
| 53 | 53 | 0.586 |
| 54 | 54 | 0.846 |
| 55 | 55 | 0.0277 |
| 56 | 56 | 0.509 |
| 57 | 57 | 0.621 |
| 58 | 58 | 0.496 |
| 59 | 59 | 0.126 |
| 6 | 6 | 0.745 |
| 60 | 60 | 0.164 |
| 61 | 61 | 0.604 |
| 62 | 62 | 0.14 |
| 63 | 63 | 0.339 |
| 64 | 64 | 0.6 |
| 65 | 65 | 0.178 |
| 66 | 66 | 0.207 |
| 67 | 67 | 0.652 |
| 68 | 68 | 0.974 |
| 69 | 69 | 0.699 |
| 7 | 7 | 0.984 |
| 70 | 70 | 0.02 |
| 71 | 71 | 0.136 |
| 72 | 72 | 0.478 |
| 73 | 73 | 0.468 |
| 74 | 74 | 0.53 |
| 75 | 75 | 0.989 |
| 76 | 76 | 0.718 |
| 77 | 77 | 0.268 |
| 78 | 78 | 0.699 |
| 79 | 79 | 0.163 |
| 8 | 8 | 0.0852 |
| 80 | 80 | 0.835 |
| 81 | 81 | 0.192 |
| 82 | 82 | 0.0445 |
| 83 | 83 | 0.572 |
| 84 | 84 | 0.463 |
| 85 | 85 | 0.00875 |
| 86 | 86 | 0.456 |
| 87 | 87 | 0.2 |
| 88 | 88 | 0.361 |
| 89 | 89 | 0.0635 |
| 9 | 9 | 0.392 |
| 90 | 90 | 0.0813 |
| 91 | 91 | 0.0166 |
| 92 | 92 | 0.00178 |
| 93 | 93 | 0.371 |
| 94 | 94 | 0.368 |
| 95 | 95 | 0.0405 |
| 96 | 96 | 0.61 |
| 97 | 97 | 0.226 |
| 98 | 98 | 0.399 |
| 99 | 99 | 0.195 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12341
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000118 human cardiac myocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000737 (striated muscle cell)
0000746 (cardiac muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000118 (human cardiac myocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000513 (cardiac muscle myoblast)
