FF:10154-103A1: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005223 | ||
|ancestors_in_cell_lineage_facet= | |HumanCAGEScanFiles=NCig10026;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/thalamus%252c%2520adult%252c%2520donor10252.NCig10026.10154-103A1.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008742;DRR009614;DRZ001039;DRZ002424;DRZ012389;DRZ013774 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001897,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0010225 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010154 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thalamus%252c%2520adult%252c%2520donor10252.CNhs12314.10154-103A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10154-103A1 | |id=FF:10154-103A1 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010154 | ||
|is_obsolete= | |||
|library_id=CNhs12314 | |||
|library_id_phase_based=2:CNhs12314 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10154 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10154 | |||
|name=thalamus, adult, donor10252 | |name=thalamus, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10026,,, | |profile_cagescan=NCig10026,,, | ||
|profile_hcage=CNhs12314,LSID913,release011,COMPLETED | |profile_hcage=CNhs12314,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=52.54575 | |rna_weight_ug=52.54575 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.96092089881837e-256!GO:0005737;cytoplasm;1.03418537264737e-143!GO:0043226;organelle;2.03790818543754e-116!GO:0043229;intracellular organelle;5.71811723863504e-116!GO:0043227;membrane-bound organelle;1.02821467492708e-110!GO:0043231;intracellular membrane-bound organelle;1.65688763416361e-110!GO:0044444;cytoplasmic part;7.9795284174651e-89!GO:0005515;protein binding;8.97162516379044e-73!GO:0044422;organelle part;1.48120691542839e-66!GO:0044446;intracellular organelle part;1.52196066789198e-65!GO:0032991;macromolecular complex;2.54388248894855e-56!GO:0016043;cellular component organization and biogenesis;3.24961205690368e-43!GO:0003723;RNA binding;2.09724873325443e-41!GO:0030529;ribonucleoprotein complex;1.71246064229307e-40!GO:0005634;nucleus;2.82347864935462e-38!GO:0044238;primary metabolic process;3.30949309485348e-38!GO:0044428;nuclear part;7.29678327203041e-38!GO:0043233;organelle lumen;7.29678327203041e-38!GO:0031974;membrane-enclosed lumen;7.29678327203041e-38!GO:0044237;cellular metabolic process;1.01601538238666e-36!GO:0005739;mitochondrion;8.52850841980588e-36!GO:0033036;macromolecule localization;1.00466959188311e-35!GO:0043170;macromolecule metabolic process;2.66293139705091e-35!GO:0015031;protein transport;1.05438380883005e-34!GO:0031090;organelle membrane;4.55561961300825e-33!GO:0008104;protein localization;3.09918590611834e-32!GO:0045184;establishment of protein localization;1.63220828628111e-31!GO:0043234;protein complex;2.99880299701844e-30!GO:0046907;intracellular transport;1.12777083599024e-29!GO:0016071;mRNA metabolic process;3.66792377614265e-29!GO:0006396;RNA processing;4.37909815070992e-27!GO:0008380;RNA splicing;3.05016861328817e-26!GO:0031975;envelope;7.60513475680261e-26!GO:0044429;mitochondrial part;1.09263307886449e-25!GO:0031967;organelle envelope;1.21983370851753e-25!GO:0019538;protein metabolic process;2.73915494602017e-25!GO:0043283;biopolymer metabolic process;2.14047287843697e-24!GO:0051649;establishment of cellular localization;3.64253481308299e-24!GO:0051641;cellular localization;5.91225874615335e-24!GO:0031981;nuclear lumen;6.26961919410678e-24!GO:0006397;mRNA processing;1.93355553672233e-23!GO:0005829;cytosol;2.93956406877719e-23!GO:0044260;cellular macromolecule metabolic process;2.30916087304391e-22!GO:0044267;cellular protein metabolic process;9.49339181525636e-22!GO:0016192;vesicle-mediated transport;1.10082364970544e-21!GO:0006886;intracellular protein transport;2.07939915687425e-21!GO:0006996;organelle organization and biogenesis;9.45913512333202e-21!GO:0010467;gene expression;1.52703211316429e-20!GO:0005840;ribosome;1.63818959264164e-19!GO:0005740;mitochondrial envelope;1.98475155780561e-18!GO:0005681;spliceosome;5.01586569158639e-18!GO:0031966;mitochondrial membrane;8.47312029064679e-18!GO:0006119;oxidative phosphorylation;1.99442522268571e-17!GO:0006412;translation;2.28782347136272e-17!GO:0000166;nucleotide binding;3.01659854614538e-17!GO:0019866;organelle inner membrane;3.39133053748477e-17!GO:0065003;macromolecular complex assembly;1.78718618264007e-16!GO:0005794;Golgi apparatus;3.09252965678683e-16!GO:0005743;mitochondrial inner membrane;3.88810871550991e-16!GO:0005654;nucleoplasm;1.54849720602491e-15!GO:0009058;biosynthetic process;5.46434404775618e-15!GO:0003735;structural constituent of ribosome;8.02324075272253e-15!GO:0022607;cellular component assembly;2.32377118816402e-14!GO:0006512;ubiquitin cycle;2.44472277587407e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.44472277587407e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.56277282203641e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;3.07622809419531e-14!GO:0016462;pyrophosphatase activity;3.12775165305953e-14!GO:0044451;nucleoplasm part;3.61801291568039e-14!GO:0016874;ligase activity;7.5284896519197e-14!GO:0017111;nucleoside-triphosphatase activity;2.01886773336023e-13!GO:0043412;biopolymer modification;2.22019072048864e-13!GO:0044455;mitochondrial membrane part;2.23866023137053e-13!GO:0009059;macromolecule biosynthetic process;2.807261758141e-13!GO:0033279;ribosomal subunit;7.45033717475636e-13!GO:0031982;vesicle;7.77064581576425e-13!GO:0006464;protein modification process;1.17063851706467e-12!GO:0008134;transcription factor binding;1.23889954493345e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.44873686739648e-12!GO:0012505;endomembrane system;1.5114885534023e-12!GO:0043687;post-translational protein modification;1.57553490614685e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.84005458934556e-12!GO:0003954;NADH dehydrogenase activity;1.84005458934556e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.84005458934556e-12!GO:0005746;mitochondrial respiratory chain;2.05536001177416e-12!GO:0030695;GTPase regulator activity;2.08092594278085e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.23471958159113e-12!GO:0044249;cellular biosynthetic process;2.68374852661986e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.97661882657536e-12!GO:0006511;ubiquitin-dependent protein catabolic process;3.40570479385717e-12!GO:0031410;cytoplasmic vesicle;3.60148863762158e-12!GO:0006457;protein folding;4.37808755220883e-12!GO:0019941;modification-dependent protein catabolic process;4.40080024532253e-12!GO:0043632;modification-dependent macromolecule catabolic process;4.40080024532253e-12!GO:0032553;ribonucleotide binding;5.31692168678018e-12!GO:0032555;purine ribonucleotide binding;5.31692168678018e-12!GO:0044257;cellular protein catabolic process;5.47413909934813e-12!GO:0048770;pigment granule;1.22725345828167e-11!GO:0042470;melanosome;1.22725345828167e-11!GO:0031988;membrane-bound vesicle;1.2274360327945e-11!GO:0017076;purine nucleotide binding;2.04174302209217e-11!GO:0016070;RNA metabolic process;2.13405428938184e-11!GO:0043228;non-membrane-bound organelle;3.16997598381872e-11!GO:0043232;intracellular non-membrane-bound organelle;3.16997598381872e-11!GO:0044265;cellular macromolecule catabolic process;3.47662768560874e-11!GO:0016023;cytoplasmic membrane-bound vesicle;5.46385205782698e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.30220801504855e-11!GO:0045271;respiratory chain complex I;9.30220801504855e-11!GO:0005747;mitochondrial respiratory chain complex I;9.30220801504855e-11!GO:0022618;protein-RNA complex assembly;1.45638911147093e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.84589697842052e-10!GO:0042773;ATP synthesis coupled electron transport;1.84589697842052e-10!GO:0043285;biopolymer catabolic process;1.96973480877448e-10!GO:0044445;cytosolic part;2.4638027663078e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.57867735239467e-10!GO:0016604;nuclear body;4.11140732636006e-10!GO:0051082;unfolded protein binding;4.11460710282944e-10!GO:0048193;Golgi vesicle transport;4.45312577384272e-10!GO:0006605;protein targeting;4.47789071953364e-10!GO:0005768;endosome;5.25995562632282e-10!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.72087042852638e-10!GO:0007264;small GTPase mediated signal transduction;6.33742747197305e-10!GO:0008092;cytoskeletal protein binding;7.26876214947294e-10!GO:0031980;mitochondrial lumen;9.14651170923316e-10!GO:0005759;mitochondrial matrix;9.14651170923316e-10!GO:0005083;small GTPase regulator activity;1.74028602675541e-09!GO:0030163;protein catabolic process;1.74822904879596e-09!GO:0016607;nuclear speck;1.76451065266861e-09!GO:0005783;endoplasmic reticulum;1.90925071393337e-09!GO:0008135;translation factor activity, nucleic acid binding;3.31100440257619e-09!GO:0006793;phosphorus metabolic process;4.92116079842059e-09!GO:0006796;phosphate metabolic process;4.92116079842059e-09!GO:0000502;proteasome complex (sensu Eukaryota);7.18272652814951e-09!GO:0044248;cellular catabolic process;8.73740884898313e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.45388617040534e-09!GO:0016044;membrane organization and biogenesis;1.12907018628469e-08!GO:0048523;negative regulation of cellular process;1.24873364175189e-08!GO:0031252;leading edge;1.41403432081129e-08!GO:0003676;nucleic acid binding;1.41403432081129e-08!GO:0008565;protein transporter activity;1.52478813244468e-08!GO:0007010;cytoskeleton organization and biogenesis;1.70832948109481e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.3767437887936e-08!GO:0000375;RNA splicing, via transesterification reactions;2.3767437887936e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.3767437887936e-08!GO:0009057;macromolecule catabolic process;2.60919337352079e-08!GO:0019899;enzyme binding;2.92582865069264e-08!GO:0030036;actin cytoskeleton organization and biogenesis;3.04376553350478e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.13335139050983e-08!GO:0050794;regulation of cellular process;4.13515192297913e-08!GO:0003924;GTPase activity;4.3602949653719e-08!GO:0005730;nucleolus;4.36713966805055e-08!GO:0005635;nuclear envelope;5.14779726146185e-08!GO:0008639;small protein conjugating enzyme activity;6.30195978166678e-08!GO:0015935;small ribosomal subunit;6.7114962114696e-08!GO:0045045;secretory pathway;7.8747421354624e-08!GO:0019787;small conjugating protein ligase activity;8.08902935031498e-08!GO:0004842;ubiquitin-protein ligase activity;8.38327936180329e-08!GO:0019829;cation-transporting ATPase activity;9.37836504941316e-08!GO:0006461;protein complex assembly;9.96328814634578e-08!GO:0006913;nucleocytoplasmic transport;1.07898141823041e-07!GO:0031965;nuclear membrane;1.26935837290484e-07!GO:0050789;regulation of biological process;1.44541674661637e-07!GO:0006446;regulation of translational initiation;1.53443198898337e-07!GO:0005525;GTP binding;1.65597132774209e-07!GO:0051169;nuclear transport;1.78110029849679e-07!GO:0003712;transcription cofactor activity;2.43574095671095e-07!GO:0032559;adenyl ribonucleotide binding;2.52492773159643e-07!GO:0030029;actin filament-based process;3.15696021638244e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.56393243818419e-07!GO:0005524;ATP binding;5.59340907470119e-07!GO:0048519;negative regulation of biological process;5.76770987662589e-07!GO:0016881;acid-amino acid ligase activity;6.93035475366826e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.78003672621956e-07!GO:0003743;translation initiation factor activity;7.81451225186596e-07!GO:0030554;adenyl nucleotide binding;9.09330970409731e-07!GO:0015631;tubulin binding;9.21777786115954e-07!GO:0005096;GTPase activator activity;1.02456273765326e-06!GO:0044431;Golgi apparatus part;1.02456273765326e-06!GO:0016564;transcription repressor activity;1.05097504028048e-06!GO:0016568;chromatin modification;1.53532518971175e-06!GO:0006413;translational initiation;1.53532518971175e-06!GO:0015986;ATP synthesis coupled proton transport;2.19662097603545e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.19662097603545e-06!GO:0032561;guanyl ribonucleotide binding;2.36620881713011e-06!GO:0019001;guanyl nucleotide binding;2.36620881713011e-06!GO:0016310;phosphorylation;2.42073840040966e-06!GO:0008047;enzyme activator activity;2.55530059550766e-06!GO:0015630;microtubule cytoskeleton;3.52871003542252e-06!GO:0044432;endoplasmic reticulum part;3.70942864254426e-06!GO:0005769;early endosome;3.73516128566824e-06!GO:0016887;ATPase activity;3.82607268103216e-06!GO:0012501;programmed cell death;4.28079380077314e-06!GO:0044440;endosomal part;4.28079380077314e-06!GO:0010008;endosome membrane;4.28079380077314e-06!GO:0008287;protein serine/threonine phosphatase complex;4.54472278671327e-06!GO:0006915;apoptosis;4.56682940750608e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;4.98348341763682e-06!GO:0006259;DNA metabolic process;5.18160741880799e-06!GO:0045786;negative regulation of progression through cell cycle;5.4052279768248e-06!GO:0006897;endocytosis;6.54215248091766e-06!GO:0010324;membrane invagination;6.54215248091766e-06!GO:0051186;cofactor metabolic process;6.54215248091766e-06!GO:0008219;cell death;6.86198925957372e-06!GO:0016265;death;6.86198925957372e-06!GO:0015934;large ribosomal subunit;7.49637185493526e-06!GO:0048471;perinuclear region of cytoplasm;7.64347738388567e-06!GO:0051246;regulation of protein metabolic process;7.99170148610275e-06!GO:0005770;late endosome;8.02537838820267e-06!GO:0042623;ATPase activity, coupled;8.5305035170498e-06!GO:0006366;transcription from RNA polymerase II promoter;9.20918940982082e-06!GO:0003779;actin binding;9.64998173608567e-06!GO:0007265;Ras protein signal transduction;1.03664562784658e-05!GO:0007242;intracellular signaling cascade;1.03763745325837e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17941593293128e-05!GO:0017038;protein import;1.25434819719259e-05!GO:0044453;nuclear membrane part;1.61004518260664e-05!GO:0006323;DNA packaging;1.68237760547003e-05!GO:0009060;aerobic respiration;2.10913680044042e-05!GO:0046034;ATP metabolic process;2.16200060217711e-05!GO:0005761;mitochondrial ribosome;2.27672288021446e-05!GO:0000313;organellar ribosome;2.27672288021446e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.43033229568322e-05!GO:0008017;microtubule binding;2.68312783120058e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.74326509657425e-05!GO:0045333;cellular respiration;2.77711285713073e-05!GO:0009150;purine ribonucleotide metabolic process;2.78156101298002e-05!GO:0032940;secretion by cell;2.80584545336976e-05!GO:0006163;purine nucleotide metabolic process;2.97401192107136e-05!GO:0005773;vacuole;2.99936208581872e-05!GO:0030027;lamellipodium;3.009751203693e-05!GO:0006403;RNA localization;3.27941663570714e-05!GO:0050657;nucleic acid transport;3.58623966537082e-05!GO:0051236;establishment of RNA localization;3.58623966537082e-05!GO:0050658;RNA transport;3.58623966537082e-05!GO:0048475;coated membrane;4.06439822909052e-05!GO:0030117;membrane coat;4.06439822909052e-05!GO:0051128;regulation of cellular component organization and biogenesis;4.09391869007382e-05!GO:0005905;coated pit;4.10446072751186e-05!GO:0009152;purine ribonucleotide biosynthetic process;4.11741355737887e-05!GO:0032446;protein modification by small protein conjugation;4.55199167723678e-05!GO:0006164;purine nucleotide biosynthetic process;4.61231283574597e-05!GO:0009056;catabolic process;4.88010445931671e-05!GO:0006754;ATP biosynthetic process;4.90921981638992e-05!GO:0006753;nucleoside phosphate metabolic process;4.90921981638992e-05!GO:0009259;ribonucleotide metabolic process;5.24981246438224e-05!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.36441857700575e-05!GO:0003714;transcription corepressor activity;5.74735663872978e-05!GO:0000245;spliceosome assembly;6.25650991089663e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.25650991089663e-05!GO:0009144;purine nucleoside triphosphate metabolic process;6.25650991089663e-05!GO:0000139;Golgi membrane;7.02345663694146e-05!GO:0045259;proton-transporting ATP synthase complex;7.16300353433198e-05!GO:0009199;ribonucleoside triphosphate metabolic process;7.18432965688086e-05!GO:0009055;electron carrier activity;7.22060474962485e-05!GO:0009141;nucleoside triphosphate metabolic process;7.56487155197714e-05!GO:0051056;regulation of small GTPase mediated signal transduction;7.56487155197714e-05!GO:0009966;regulation of signal transduction;7.93189541816375e-05!GO:0005643;nuclear pore;8.31562689801515e-05!GO:0006810;transport;8.67794260694248e-05!GO:0006099;tricarboxylic acid cycle;9.38576785171173e-05!GO:0046356;acetyl-CoA catabolic process;9.38576785171173e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.39248238889794e-05!GO:0015078;hydrogen ion transmembrane transporter activity;9.51533677237961e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.86418860840694e-05!GO:0005874;microtubule;0.000100163507240308!GO:0016567;protein ubiquitination;0.000101128412333341!GO:0005789;endoplasmic reticulum membrane;0.000120611406696656!GO:0065007;biological regulation;0.000120624282000034!GO:0031072;heat shock protein binding;0.000132640290560041!GO:0009260;ribonucleotide biosynthetic process;0.000162351224280606!GO:0001726;ruffle;0.000163709050564204!GO:0000151;ubiquitin ligase complex;0.000180279541657576!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000183288935648593!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000183288935648593!GO:0043566;structure-specific DNA binding;0.000194288790776683!GO:0000323;lytic vacuole;0.00019781157975997!GO:0005764;lysosome;0.00019781157975997!GO:0000159;protein phosphatase type 2A complex;0.000210642806803183!GO:0009142;nucleoside triphosphate biosynthetic process;0.000210807700062195!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000210807700062195!GO:0030135;coated vesicle;0.000211586409981825!GO:0005085;guanyl-nucleotide exchange factor activity;0.000215059724630798!GO:0009892;negative regulation of metabolic process;0.000223036597854091!GO:0009109;coenzyme catabolic process;0.000249563957438513!GO:0019717;synaptosome;0.00025763126737869!GO:0006613;cotranslational protein targeting to membrane;0.000266022985500572!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000272689401637037!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00028302776698926!GO:0031901;early endosome membrane;0.00028499166357965!GO:0051170;nuclear import;0.000318054858527832!GO:0006888;ER to Golgi vesicle-mediated transport;0.00032344375326975!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000326293413608838!GO:0006606;protein import into nucleus;0.000330646260769909!GO:0004721;phosphoprotein phosphatase activity;0.000335565710637817!GO:0016197;endosome transport;0.000353377205445009!GO:0005793;ER-Golgi intermediate compartment;0.000360242200216245!GO:0016481;negative regulation of transcription;0.000364205907089589!GO:0016791;phosphoric monoester hydrolase activity;0.000366198856856283!GO:0007399;nervous system development;0.000375343166742417!GO:0030120;vesicle coat;0.000375343166742417!GO:0030662;coated vesicle membrane;0.000375343166742417!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000396934433323951!GO:0015399;primary active transmembrane transporter activity;0.000396934433323951!GO:0003724;RNA helicase activity;0.000400440451290529!GO:0051028;mRNA transport;0.000412487189534633!GO:0051187;cofactor catabolic process;0.000442036818706835!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000445625240745435!GO:0006084;acetyl-CoA metabolic process;0.000456951729180177!GO:0006732;coenzyme metabolic process;0.000483119891806999!GO:0008601;protein phosphatase type 2A regulator activity;0.000516546734282648!GO:0051179;localization;0.00055514919287045!GO:0030867;rough endoplasmic reticulum membrane;0.000604294779481017!GO:0007049;cell cycle;0.000621740089460485!GO:0000902;cell morphogenesis;0.000639310103167995!GO:0032989;cellular structure morphogenesis;0.000639310103167995!GO:0005798;Golgi-associated vesicle;0.000658262303877746!GO:0031324;negative regulation of cellular metabolic process;0.000756253258120164!GO:0016311;dephosphorylation;0.0007614923062793!GO:0030532;small nuclear ribonucleoprotein complex;0.000792258430645514!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000827749307936939!GO:0006402;mRNA catabolic process;0.000851688381071387!GO:0008026;ATP-dependent helicase activity;0.000860536248153918!GO:0004386;helicase activity;0.000860536248153918!GO:0019208;phosphatase regulator activity;0.000945578104897408!GO:0003713;transcription coactivator activity;0.000962365485948318!GO:0043069;negative regulation of programmed cell death;0.000995519007597352!GO:0051726;regulation of cell cycle;0.00100243358806611!GO:0048468;cell development;0.0010162183287591!GO:0043492;ATPase activity, coupled to movement of substances;0.0010304499798188!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0010395060634434!GO:0051276;chromosome organization and biogenesis;0.00108335576469515!GO:0043066;negative regulation of apoptosis;0.00116053603534509!GO:0007019;microtubule depolymerization;0.00122539743322743!GO:0042802;identical protein binding;0.00123471685594778!GO:0005791;rough endoplasmic reticulum;0.00124812245411887!GO:0006916;anti-apoptosis;0.00129057420918957!GO:0000074;regulation of progression through cell cycle;0.00136227923354992!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00143751243214263!GO:0005839;proteasome core complex (sensu Eukaryota);0.00146371872666784!GO:0003729;mRNA binding;0.00150332123066583!GO:0019902;phosphatase binding;0.0015119759227504!GO:0045892;negative regulation of transcription, DNA-dependent;0.0015126789145686!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00155187805909972!GO:0004812;aminoacyl-tRNA ligase activity;0.00155187805909972!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00155187805909972!GO:0008654;phospholipid biosynthetic process;0.0016531680999359!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00174350744988263!GO:0006470;protein amino acid dephosphorylation;0.00175809661791718!GO:0003697;single-stranded DNA binding;0.00175809661791718!GO:0016363;nuclear matrix;0.00179679258159625!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00180316901541019!GO:0051188;cofactor biosynthetic process;0.00180316901541019!GO:0006607;NLS-bearing substrate import into nucleus;0.00194263152384282!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00198402697994749!GO:0043623;cellular protein complex assembly;0.00201817455203688!GO:0004722;protein serine/threonine phosphatase activity;0.00202319543060218!GO:0005099;Ras GTPase activator activity;0.002027301506975!GO:0005875;microtubule associated complex;0.00207431533325201!GO:0043209;myelin sheath;0.00212291453145614!GO:0051234;establishment of localization;0.00215463378669755!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00219283301502873!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00219962357794496!GO:0019222;regulation of metabolic process;0.00220046299306442!GO:0005100;Rho GTPase activator activity;0.00232001929939727!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00235238751478453!GO:0030133;transport vesicle;0.00239100865128085!GO:0046578;regulation of Ras protein signal transduction;0.00239100865128085!GO:0008154;actin polymerization and/or depolymerization;0.00239238517559801!GO:0022890;inorganic cation transmembrane transporter activity;0.00259328548971375!GO:0065002;intracellular protein transport across a membrane;0.00259856242252575!GO:0005741;mitochondrial outer membrane;0.00262512764377127!GO:0043038;amino acid activation;0.00264894659750175!GO:0006418;tRNA aminoacylation for protein translation;0.00264894659750175!GO:0043039;tRNA aminoacylation;0.00264894659750175!GO:0051087;chaperone binding;0.00264894659750175!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.002651867014875!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00278696827907535!GO:0008286;insulin receptor signaling pathway;0.00302865522082171!GO:0006612;protein targeting to membrane;0.00304044984983196!GO:0019867;outer membrane;0.00306280573842421!GO:0005938;cell cortex;0.00308821965023236!GO:0031968;organelle outer membrane;0.00310493375211082!GO:0051168;nuclear export;0.00330754651721014!GO:0005813;centrosome;0.0034391011509029!GO:0019888;protein phosphatase regulator activity;0.00346772723206199!GO:0031114;regulation of microtubule depolymerization;0.00375062818918901!GO:0007026;negative regulation of microtubule depolymerization;0.00375062818918901!GO:0008361;regulation of cell size;0.00375062818918901!GO:0008186;RNA-dependent ATPase activity;0.00375062818918901!GO:0007266;Rho protein signal transduction;0.00381409131231576!GO:0007243;protein kinase cascade;0.00392916466159755!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00396248457590364!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00396248457590364!GO:0006401;RNA catabolic process;0.00398134519413855!GO:0042254;ribosome biogenesis and assembly;0.00403445225169012!GO:0019904;protein domain specific binding;0.00426346229651724!GO:0007272;ensheathment of neurons;0.00433772168863783!GO:0008366;axon ensheathment;0.00433772168863783!GO:0006650;glycerophospholipid metabolic process;0.00436357576025534!GO:0043087;regulation of GTPase activity;0.00449425516723825!GO:0022406;membrane docking;0.00468780483182283!GO:0048278;vesicle docking;0.00468780483182283!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00487545908202753!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00487545908202753!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00487545908202753!GO:0046930;pore complex;0.00514746791793527!GO:0008139;nuclear localization sequence binding;0.00538104865351938!GO:0048487;beta-tubulin binding;0.0054950143934141!GO:0050811;GABA receptor binding;0.00562153912798233!GO:0051920;peroxiredoxin activity;0.00574849845992274!GO:0031902;late endosome membrane;0.00577662858910255!GO:0006752;group transfer coenzyme metabolic process;0.00599464917917438!GO:0046467;membrane lipid biosynthetic process;0.0060496079034956!GO:0030118;clathrin coat;0.00611044561485886!GO:0006904;vesicle docking during exocytosis;0.0062322994365292!GO:0005815;microtubule organizing center;0.00642040318804554!GO:0030041;actin filament polymerization;0.00642040318804554!GO:0004298;threonine endopeptidase activity;0.00660592807668368!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00663533174826704!GO:0042578;phosphoric ester hydrolase activity;0.00696218145558149!GO:0051789;response to protein stimulus;0.00699742067963325!GO:0006986;response to unfolded protein;0.00699742067963325!GO:0007034;vacuolar transport;0.00704990897640398!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00704990897640398!GO:0004667;prostaglandin-D synthase activity;0.00704990897640398!GO:0050802;circadian sleep/wake cycle, sleep;0.00704990897640398!GO:0022410;circadian sleep/wake cycle process;0.00704990897640398!GO:0042749;regulation of circadian sleep/wake cycle;0.00704990897640398!GO:0004674;protein serine/threonine kinase activity;0.00723941914393456!GO:0003690;double-stranded DNA binding;0.0072481154047919!GO:0001508;regulation of action potential;0.00741482209921607!GO:0006974;response to DNA damage stimulus;0.00778130814531204!GO:0016050;vesicle organization and biogenesis;0.00833913342439829!GO:0001666;response to hypoxia;0.00833913342439829!GO:0005048;signal sequence binding;0.0085270968293921!GO:0043021;ribonucleoprotein binding;0.00855987603087552!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00859499714552256!GO:0005885;Arp2/3 protein complex;0.00859499714552256!GO:0016049;cell growth;0.00859499714552256!GO:0033673;negative regulation of kinase activity;0.00930306151334753!GO:0006469;negative regulation of protein kinase activity;0.00930306151334753!GO:0007050;cell cycle arrest;0.00944668881704684!GO:0051427;hormone receptor binding;0.00981907188646925!GO:0004004;ATP-dependent RNA helicase activity;0.00992058539375145!GO:0051261;protein depolymerization;0.0100405026512613!GO:0005774;vacuolar membrane;0.010598660755016!GO:0043005;neuron projection;0.0107967263981168!GO:0019783;small conjugating protein-specific protease activity;0.0109649755904975!GO:0016301;kinase activity;0.0110005035102772!GO:0015980;energy derivation by oxidation of organic compounds;0.0110080456882665!GO:0009108;coenzyme biosynthetic process;0.0112395370853469!GO:0005667;transcription factor complex;0.0119327945005339!GO:0006891;intra-Golgi vesicle-mediated transport;0.0123837824118357!GO:0048500;signal recognition particle;0.0127261523182271!GO:0006643;membrane lipid metabolic process;0.0129303994215448!GO:0007017;microtubule-based process;0.0131500040082068!GO:0051348;negative regulation of transferase activity;0.013557064414212!GO:0009117;nucleotide metabolic process;0.0140328255468551!GO:0043488;regulation of mRNA stability;0.0140328255468551!GO:0043487;regulation of RNA stability;0.0140328255468551!GO:0004843;ubiquitin-specific protease activity;0.0142711860855367!GO:0030742;GTP-dependent protein binding;0.0143291648874347!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0144675789525613!GO:0055083;monovalent inorganic anion homeostasis;0.0144675789525613!GO:0055064;chloride ion homeostasis;0.0144675789525613!GO:0030644;cellular chloride ion homeostasis;0.0144675789525613!GO:0051539;4 iron, 4 sulfur cluster binding;0.0145243467809472!GO:0035257;nuclear hormone receptor binding;0.0165393436811389!GO:0050767;regulation of neurogenesis;0.0172303561779439!GO:0042026;protein refolding;0.0172303561779439!GO:0035035;histone acetyltransferase binding;0.0179625145154361!GO:0005869;dynactin complex;0.0185946722590699!GO:0030384;phosphoinositide metabolic process;0.0188897682522397!GO:0042981;regulation of apoptosis;0.0194055463347021!GO:0051252;regulation of RNA metabolic process;0.0194280007248783!GO:0043067;regulation of programmed cell death;0.0194753252563993!GO:0044448;cell cortex part;0.0196735565426708!GO:0004221;ubiquitin thiolesterase activity;0.019737716755084!GO:0000059;protein import into nucleus, docking;0.019737716755084!GO:0065009;regulation of a molecular function;0.019737716755084!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0201747079337416!GO:0005765;lysosomal membrane;0.0205758902369955!GO:0030258;lipid modification;0.0210143620217698!GO:0000118;histone deacetylase complex;0.0212312508413728!GO:0016563;transcription activator activity;0.021917043072818!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0220187935807046!GO:0008610;lipid biosynthetic process;0.0222288244270385!GO:0016740;transferase activity;0.0226676760576063!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0228922804195987!GO:0030136;clathrin-coated vesicle;0.0234152935082525!GO:0031109;microtubule polymerization or depolymerization;0.0235009750273513!GO:0016126;sterol biosynthetic process;0.0236389241319996!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0239058706758296!GO:0001887;selenium metabolic process;0.0239300939614201!GO:0051540;metal cluster binding;0.0242269625090144!GO:0051536;iron-sulfur cluster binding;0.0242269625090144!GO:0006338;chromatin remodeling;0.024974662834304!GO:0030132;clathrin coat of coated pit;0.025382889848013!GO:0043681;protein import into mitochondrion;0.025382889848013!GO:0032011;ARF protein signal transduction;0.0261392814210928!GO:0032012;regulation of ARF protein signal transduction;0.0261392814210928!GO:0015629;actin cytoskeleton;0.0262903994762617!GO:0006414;translational elongation;0.0263360392929488!GO:0003702;RNA polymerase II transcription factor activity;0.026377858802844!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0267522248117506!GO:0033043;regulation of organelle organization and biogenesis;0.0267522248117506!GO:0030139;endocytic vesicle;0.0267588109652811!GO:0006364;rRNA processing;0.0268099723140916!GO:0019903;protein phosphatase binding;0.0269331591271091!GO:0015682;ferric iron transport;0.0274128527778017!GO:0015091;ferric iron transmembrane transporter activity;0.0274128527778017!GO:0031643;positive regulation of myelination;0.0274128527778017!GO:0017166;vinculin binding;0.0277617098815352!GO:0012506;vesicle membrane;0.0278327691341944!GO:0005788;endoplasmic reticulum lumen;0.0281581050272038!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0282546707765068!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0282546707765068!GO:0006333;chromatin assembly or disassembly;0.0285681688975731!GO:0000062;acyl-CoA binding;0.0288320554386559!GO:0022402;cell cycle process;0.0290690074147806!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0290690074147806!GO:0048154;S100 beta binding;0.0295021312047936!GO:0007041;lysosomal transport;0.0297134968062172!GO:0019911;structural constituent of myelin sheath;0.0298082968812299!GO:0030426;growth cone;0.0299138151896756!GO:0006376;mRNA splice site selection;0.0299138151896756!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0299138151896756!GO:0008022;protein C-terminus binding;0.0308505988659559!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0311396041105899!GO:0006383;transcription from RNA polymerase III promoter;0.031849034919196!GO:0016859;cis-trans isomerase activity;0.0321508446489642!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0324207943680579!GO:0045047;protein targeting to ER;0.0324207943680579!GO:0044437;vacuolar part;0.0330012758495371!GO:0006892;post-Golgi vesicle-mediated transport;0.0330994030195824!GO:0007005;mitochondrion organization and biogenesis;0.0337682402918409!GO:0051287;NAD binding;0.0337684317166785!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0343197369966063!GO:0031124;mRNA 3'-end processing;0.0344292285693115!GO:0000314;organellar small ribosomal subunit;0.0351516095380755!GO:0005763;mitochondrial small ribosomal subunit;0.0351516095380755!GO:0051020;GTPase binding;0.0356166797938095!GO:0006665;sphingolipid metabolic process;0.0365720613878391!GO:0008312;7S RNA binding;0.0366347608059188!GO:0005868;cytoplasmic dynein complex;0.0367467700689981!GO:0030880;RNA polymerase complex;0.0370601705298116!GO:0016072;rRNA metabolic process;0.0374800180356603!GO:0042552;myelination;0.0375666758721356!GO:0030425;dendrite;0.0385680462879774!GO:0003711;transcription elongation regulator activity;0.0385680462879774!GO:0030427;site of polarized growth;0.0385680462879774!GO:0046839;phospholipid dephosphorylation;0.0385680462879774!GO:0003746;translation elongation factor activity;0.0391322488885129!GO:0006399;tRNA metabolic process;0.0391322488885129!GO:0000287;magnesium ion binding;0.0428944765906959!GO:0003725;double-stranded RNA binding;0.0430763029219875!GO:0001558;regulation of cell growth;0.0435842484903907!GO:0007006;mitochondrial membrane organization and biogenesis;0.0435906906908821!GO:0030658;transport vesicle membrane;0.0437094759965216!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0437759496249368!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0453412320471473!GO:0030641;cellular hydrogen ion homeostasis;0.0460450054234646!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0465774560494935!GO:0006378;mRNA polyadenylation;0.0471205104103018 | |||
|sample_id=10154 | |sample_id=10154 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=thalamus | |sample_tissue=thalamus | ||
|top_motifs=SOX2:3.86534744814;SOX5:3.461378557;SOX{8,9,10}:3.09131237355;NFIX:2.94021646835;MYFfamily:2.93576150708;HBP1_HMGB_SSRP1_UBTF:2.89669781429;RREB1:2.89633821491;GATA4:2.89168152212;RFX2..5_RFXANK_RFXAP:2.61044074327;REST:2.57231346844;NHLH1,2:2.5607509101;ATF2:2.52095823459;ZFP161:2.51673685259;MED-1{core}:2.51466038503;CUX2:2.43562026534;FOXP1:2.42931768205;OCT4_SOX2{dimer}:2.40134316771;NKX3-2:2.2780060286;BPTF:2.25911087748;POU6F1:2.24662935831;PRDM1:2.19253351869;GTF2I:2.17496988896;FOXD3:2.13077135139;PATZ1:2.05898430858;DBP:1.98473563488;EGR1..3:1.93322490048;SOX17:1.93298809858;ZBTB6:1.93287740301;ARID5B:1.91342742627;TGIF1:1.9134039267;NKX6-1,2:1.88650123925;MZF1:1.88351173408;AR:1.86319857637;HIC1:1.8526288816;RFX1:1.85226239342;MTE{core}:1.80643283838;FOX{F1,F2,J1}:1.78323369121;TLX2:1.76218839796;FOXQ1:1.75716920482;LMO2:1.75452461671;TOPORS:1.7531699191;RBPJ:1.74741141838;FOXO1,3,4:1.74240458395;PRRX1,2:1.73865327469;FOXP3:1.73292142514;XBP1:1.73273248671;NR3C1:1.73096885276;CDC5L:1.72772477622;TFAP2B:1.69639918585;EP300:1.68969369777;MTF1:1.61954206278;MAFB:1.60516782854;POU5F1:1.54220174082;PAX6:1.53888450981;MAZ:1.53744369173;PAX5:1.53390919096;ZNF384:1.52470334319;FOXM1:1.52122135983;FOX{D1,D2}:1.47533438504;ZBTB16:1.42992903412;PDX1:1.40677918781;SMAD1..7,9:1.39082980657;SREBF1,2:1.34092888057;KLF4:1.27671874952;PAX4:1.25609593413;AHR_ARNT_ARNT2:1.24969292119;LEF1_TCF7_TCF7L1,2:1.21627807951;NRF1:1.20465176948;IKZF2:1.18940682789;T:1.15142833167;ZNF143:1.14673237985;MYBL2:1.14205302851;SP1:1.11569873619;STAT1,3:1.11144470246;HOXA9_MEIS1:1.1061668124;BREu{core}:1.08132617195;NANOG:1.04201093525;ONECUT1,2:1.00367875468;FOX{I1,J2}:0.980330282306;TLX1..3_NFIC{dimer}:0.963841002374;NFIL3:0.963302737517;HOX{A4,D4}:0.878942601814;EBF1:0.85627075483;STAT2,4,6:0.816738132907;SPZ1:0.80672345186;ZNF238:0.788447877673;TFAP2{A,C}:0.782770643116;HOX{A6,A7,B6,B7}:0.776891423695;HSF1,2:0.772468778886;GFI1B:0.709879572147;ALX1:0.69412198059;GTF2A1,2:0.673867196038;ZNF423:0.664802351859;JUN:0.647784365095;IRF7:0.631974541939;GFI1:0.616598915499;HAND1,2:0.568877612431;HMGA1,2:0.562698995638;ADNP_IRX_SIX_ZHX:0.558139879816;CRX:0.536303133423;HMX1:0.506168617447;CREB1:0.500223759158;POU3F1..4:0.498375045498;CDX1,2,4:0.492595246325;TFDP1:0.466783909763;PITX1..3:0.455974197574;ZIC1..3:0.446591296831;GCM1,2:0.398553063571;VSX1,2:0.321283851455;GZF1:0.303046219818;NFY{A,B,C}:0.278991043386;POU1F1:0.242117517306;IRF1,2:0.19697155155;PAX2:0.191735868742;FOXN1:0.189192056296;NKX2-3_NKX2-5:0.138847031298;NFATC1..3:0.0905260462385;RORA:0.0830294578469;FOXA2:0.0700037378929;MEF2{A,B,C,D}:0.00750724260114;TEF:-0.00978290218878;ATF5_CREB3:-0.027934942277;YY1:-0.0536463804356;MYOD1:-0.0591893448349;NKX2-2,8:-0.0804177469975;ZEB1:-0.0818350477541;PBX1:-0.12695524709;XCPE1{core}:-0.169164543468;AIRE:-0.200327922624;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214342890301;ESRRA:-0.240785127597;UFEwm:-0.253764276022;SPI1:-0.303233928358;LHX3,4:-0.339922685967;SPIB:-0.456046233536;ATF4:-0.468433198149;TFCP2:-0.4746165008;NFE2L2:-0.486198306177;bHLH_family:-0.487597841211;DMAP1_NCOR{1,2}_SMARC:-0.499672678596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.501181702348;EVI1:-0.5129228136;ETS1,2:-0.515730001303;HNF4A_NR2F1,2:-0.584993766876;FOXL1:-0.603965871496;TFAP4:-0.621391429721;IKZF1:-0.630641321409;NR1H4:-0.631433531477;CEBPA,B_DDIT3:-0.692828151065;NKX3-1:-0.737287638028;HIF1A:-0.753751863979;GATA6:-0.779664964088;NR5A1,2:-0.779848923472;ALX4:-0.795069983465;TP53:-0.795452682741;NFE2:-0.804796788599;NANOG{mouse}:-0.828597520993;PAX1,9:-0.840322546375;TBX4,5:-0.844856496204;SNAI1..3:-0.86719056529;ELK1,4_GABP{A,B1}:-0.931731790618;TEAD1:-0.94362620792;ATF6:-0.945064676818;HNF1A:-0.974126739683;ELF1,2,4:-0.977366696876;NFE2L1:-0.985079705711;FOSL2:-1.01725604751;PAX8:-1.01765977071;RXR{A,B,G}:-1.0430676508;NKX2-1,4:-1.05072895944;E2F1..5:-1.064673931;NFKB1_REL_RELA:-1.0848600766;FOS_FOS{B,L1}_JUN{B,D}:-1.15796914862;PAX3,7:-1.16242993324;BACH2:-1.18898981375;MYB:-1.19671497429;RUNX1..3:-1.20470701193;HLF:-1.20507227615;TBP:-1.27630341695;ESR1:-1.28224355854;POU2F1..3:-1.40305926504;SRF:-1.47479103286;TAL1_TCF{3,4,12}:-1.47761562606;HES1:-1.51767600572;RXRA_VDR{dimer}:-1.52690884268;NR6A1:-1.52889065765;GLI1..3:-1.58244219217;ZNF148:-1.60205141033;STAT5{A,B}:-2.15241197602;EN1,2:-2.25625153805;HOX{A5,B5}:-2.79879489502;PPARG:-2.97514001391 | |top_motifs=SOX2:3.86534744814;SOX5:3.461378557;SOX{8,9,10}:3.09131237355;NFIX:2.94021646835;MYFfamily:2.93576150708;HBP1_HMGB_SSRP1_UBTF:2.89669781429;RREB1:2.89633821491;GATA4:2.89168152212;RFX2..5_RFXANK_RFXAP:2.61044074327;REST:2.57231346844;NHLH1,2:2.5607509101;ATF2:2.52095823459;ZFP161:2.51673685259;MED-1{core}:2.51466038503;CUX2:2.43562026534;FOXP1:2.42931768205;OCT4_SOX2{dimer}:2.40134316771;NKX3-2:2.2780060286;BPTF:2.25911087748;POU6F1:2.24662935831;PRDM1:2.19253351869;GTF2I:2.17496988896;FOXD3:2.13077135139;PATZ1:2.05898430858;DBP:1.98473563488;EGR1..3:1.93322490048;SOX17:1.93298809858;ZBTB6:1.93287740301;ARID5B:1.91342742627;TGIF1:1.9134039267;NKX6-1,2:1.88650123925;MZF1:1.88351173408;AR:1.86319857637;HIC1:1.8526288816;RFX1:1.85226239342;MTE{core}:1.80643283838;FOX{F1,F2,J1}:1.78323369121;TLX2:1.76218839796;FOXQ1:1.75716920482;LMO2:1.75452461671;TOPORS:1.7531699191;RBPJ:1.74741141838;FOXO1,3,4:1.74240458395;PRRX1,2:1.73865327469;FOXP3:1.73292142514;XBP1:1.73273248671;NR3C1:1.73096885276;CDC5L:1.72772477622;TFAP2B:1.69639918585;EP300:1.68969369777;MTF1:1.61954206278;MAFB:1.60516782854;POU5F1:1.54220174082;PAX6:1.53888450981;MAZ:1.53744369173;PAX5:1.53390919096;ZNF384:1.52470334319;FOXM1:1.52122135983;FOX{D1,D2}:1.47533438504;ZBTB16:1.42992903412;PDX1:1.40677918781;SMAD1..7,9:1.39082980657;SREBF1,2:1.34092888057;KLF4:1.27671874952;PAX4:1.25609593413;AHR_ARNT_ARNT2:1.24969292119;LEF1_TCF7_TCF7L1,2:1.21627807951;NRF1:1.20465176948;IKZF2:1.18940682789;T:1.15142833167;ZNF143:1.14673237985;MYBL2:1.14205302851;SP1:1.11569873619;STAT1,3:1.11144470246;HOXA9_MEIS1:1.1061668124;BREu{core}:1.08132617195;NANOG:1.04201093525;ONECUT1,2:1.00367875468;FOX{I1,J2}:0.980330282306;TLX1..3_NFIC{dimer}:0.963841002374;NFIL3:0.963302737517;HOX{A4,D4}:0.878942601814;EBF1:0.85627075483;STAT2,4,6:0.816738132907;SPZ1:0.80672345186;ZNF238:0.788447877673;TFAP2{A,C}:0.782770643116;HOX{A6,A7,B6,B7}:0.776891423695;HSF1,2:0.772468778886;GFI1B:0.709879572147;ALX1:0.69412198059;GTF2A1,2:0.673867196038;ZNF423:0.664802351859;JUN:0.647784365095;IRF7:0.631974541939;GFI1:0.616598915499;HAND1,2:0.568877612431;HMGA1,2:0.562698995638;ADNP_IRX_SIX_ZHX:0.558139879816;CRX:0.536303133423;HMX1:0.506168617447;CREB1:0.500223759158;POU3F1..4:0.498375045498;CDX1,2,4:0.492595246325;TFDP1:0.466783909763;PITX1..3:0.455974197574;ZIC1..3:0.446591296831;GCM1,2:0.398553063571;VSX1,2:0.321283851455;GZF1:0.303046219818;NFY{A,B,C}:0.278991043386;POU1F1:0.242117517306;IRF1,2:0.19697155155;PAX2:0.191735868742;FOXN1:0.189192056296;NKX2-3_NKX2-5:0.138847031298;NFATC1..3:0.0905260462385;RORA:0.0830294578469;FOXA2:0.0700037378929;MEF2{A,B,C,D}:0.00750724260114;TEF:-0.00978290218878;ATF5_CREB3:-0.027934942277;YY1:-0.0536463804356;MYOD1:-0.0591893448349;NKX2-2,8:-0.0804177469975;ZEB1:-0.0818350477541;PBX1:-0.12695524709;XCPE1{core}:-0.169164543468;AIRE:-0.200327922624;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214342890301;ESRRA:-0.240785127597;UFEwm:-0.253764276022;SPI1:-0.303233928358;LHX3,4:-0.339922685967;SPIB:-0.456046233536;ATF4:-0.468433198149;TFCP2:-0.4746165008;NFE2L2:-0.486198306177;bHLH_family:-0.487597841211;DMAP1_NCOR{1,2}_SMARC:-0.499672678596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.501181702348;EVI1:-0.5129228136;ETS1,2:-0.515730001303;HNF4A_NR2F1,2:-0.584993766876;FOXL1:-0.603965871496;TFAP4:-0.621391429721;IKZF1:-0.630641321409;NR1H4:-0.631433531477;CEBPA,B_DDIT3:-0.692828151065;NKX3-1:-0.737287638028;HIF1A:-0.753751863979;GATA6:-0.779664964088;NR5A1,2:-0.779848923472;ALX4:-0.795069983465;TP53:-0.795452682741;NFE2:-0.804796788599;NANOG{mouse}:-0.828597520993;PAX1,9:-0.840322546375;TBX4,5:-0.844856496204;SNAI1..3:-0.86719056529;ELK1,4_GABP{A,B1}:-0.931731790618;TEAD1:-0.94362620792;ATF6:-0.945064676818;HNF1A:-0.974126739683;ELF1,2,4:-0.977366696876;NFE2L1:-0.985079705711;FOSL2:-1.01725604751;PAX8:-1.01765977071;RXR{A,B,G}:-1.0430676508;NKX2-1,4:-1.05072895944;E2F1..5:-1.064673931;NFKB1_REL_RELA:-1.0848600766;FOS_FOS{B,L1}_JUN{B,D}:-1.15796914862;PAX3,7:-1.16242993324;BACH2:-1.18898981375;MYB:-1.19671497429;RUNX1..3:-1.20470701193;HLF:-1.20507227615;TBP:-1.27630341695;ESR1:-1.28224355854;POU2F1..3:-1.40305926504;SRF:-1.47479103286;TAL1_TCF{3,4,12}:-1.47761562606;HES1:-1.51767600572;RXRA_VDR{dimer}:-1.52690884268;NR6A1:-1.52889065765;GLI1..3:-1.58244219217;ZNF148:-1.60205141033;STAT5{A,B}:-2.15241197602;EN1,2:-2.25625153805;HOX{A5,B5}:-2.79879489502;PPARG:-2.97514001391 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10154-103A1;search_select_hide=table117:FF:10154-103A1 | |||
}} | }} | ||
Latest revision as of 12:22, 3 June 2020
| Name: | thalamus, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12314 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12314
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12314
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.074 |
| 10 | 10 | 0.0567 |
| 100 | 100 | 0.371 |
| 101 | 101 | 0.401 |
| 102 | 102 | 0.925 |
| 103 | 103 | 0.0505 |
| 104 | 104 | 0.104 |
| 105 | 105 | 0.158 |
| 106 | 106 | 0.0249 |
| 107 | 107 | 0.129 |
| 108 | 108 | 0.918 |
| 109 | 109 | 9.81437e-4 |
| 11 | 11 | 0.00877 |
| 110 | 110 | 0.0519 |
| 111 | 111 | 0.219 |
| 112 | 112 | 0.332 |
| 113 | 113 | 0.332 |
| 114 | 114 | 0.191 |
| 115 | 115 | 0.823 |
| 116 | 116 | 0.144 |
| 117 | 117 | 0.0157 |
| 118 | 118 | 0.27 |
| 119 | 119 | 0.297 |
| 12 | 12 | 0.49 |
| 120 | 120 | 0.206 |
| 121 | 121 | 0.392 |
| 122 | 122 | 0.828 |
| 123 | 123 | 0.274 |
| 124 | 124 | 0.266 |
| 125 | 125 | 0.542 |
| 126 | 126 | 0.046 |
| 127 | 127 | 0.4 |
| 128 | 128 | 0.169 |
| 129 | 129 | 0.51 |
| 13 | 13 | 0.00362 |
| 130 | 130 | 0.34 |
| 131 | 131 | 0.0417 |
| 132 | 132 | 0.425 |
| 133 | 133 | 0.115 |
| 134 | 134 | 0.472 |
| 135 | 135 | 0.184 |
| 136 | 136 | 8.82695e-4 |
| 137 | 137 | 0.887 |
| 138 | 138 | 0.915 |
| 139 | 139 | 0.281 |
| 14 | 14 | 0.923 |
| 140 | 140 | 0.982 |
| 141 | 141 | 0.415 |
| 142 | 142 | 0.353 |
| 143 | 143 | 0.0409 |
| 144 | 144 | 0.697 |
| 145 | 145 | 0.29 |
| 146 | 146 | 0.624 |
| 147 | 147 | 0.804 |
| 148 | 148 | 0.475 |
| 149 | 149 | 0.28 |
| 15 | 15 | 0.0687 |
| 150 | 150 | 0.108 |
| 151 | 151 | 0.822 |
| 152 | 152 | 0.0656 |
| 153 | 153 | 0.89 |
| 154 | 154 | 0.278 |
| 155 | 155 | 0.958 |
| 156 | 156 | 0.412 |
| 157 | 157 | 0.409 |
| 158 | 158 | 0.0857 |
| 159 | 159 | 0.00477 |
| 16 | 16 | 0.0268 |
| 160 | 160 | 0.237 |
| 161 | 161 | 0.364 |
| 162 | 162 | 0.654 |
| 163 | 163 | 0.916 |
| 164 | 164 | 0.0136 |
| 165 | 165 | 0.168 |
| 166 | 166 | 0.812 |
| 167 | 167 | 0.903 |
| 168 | 168 | 0.741 |
| 169 | 169 | 0.0227 |
| 17 | 17 | 0.0905 |
| 18 | 18 | 0.0546 |
| 19 | 19 | 0.264 |
| 2 | 2 | 0.903 |
| 20 | 20 | 0.144 |
| 21 | 21 | 0.0383 |
| 22 | 22 | 0.227 |
| 23 | 23 | 0.389 |
| 24 | 24 | 0.0453 |
| 25 | 25 | 0.544 |
| 26 | 26 | 0.00313 |
| 27 | 27 | 0.517 |
| 28 | 28 | 0.855 |
| 29 | 29 | 0.00332 |
| 3 | 3 | 0.0684 |
| 30 | 30 | 0.925 |
| 31 | 31 | 0.91 |
| 32 | 32 | 0.00961 |
| 33 | 33 | 0.0461 |
| 34 | 34 | 0.675 |
| 35 | 35 | 0.614 |
| 36 | 36 | 0.241 |
| 37 | 37 | 0.0312 |
| 38 | 38 | 0.441 |
| 39 | 39 | 0.3 |
| 4 | 4 | 0.793 |
| 40 | 40 | 0.0541 |
| 41 | 41 | 0.312 |
| 42 | 42 | 0.265 |
| 43 | 43 | 0.141 |
| 44 | 44 | 0.123 |
| 45 | 45 | 0.68 |
| 46 | 46 | 0.0513 |
| 47 | 47 | 0.0791 |
| 48 | 48 | 0.063 |
| 49 | 49 | 0.384 |
| 5 | 5 | 0.928 |
| 50 | 50 | 0.481 |
| 51 | 51 | 0.387 |
| 52 | 52 | 0.592 |
| 53 | 53 | 0.474 |
| 54 | 54 | 0.536 |
| 55 | 55 | 0.727 |
| 56 | 56 | 0.596 |
| 57 | 57 | 0.405 |
| 58 | 58 | 0.362 |
| 59 | 59 | 0.0554 |
| 6 | 6 | 0.797 |
| 60 | 60 | 0.0864 |
| 61 | 61 | 0.137 |
| 62 | 62 | 0.207 |
| 63 | 63 | 0.338 |
| 64 | 64 | 0.138 |
| 65 | 65 | 0.266 |
| 66 | 66 | 0.112 |
| 67 | 67 | 0.329 |
| 68 | 68 | 0.446 |
| 69 | 69 | 0.262 |
| 7 | 7 | 0.121 |
| 70 | 70 | 0.0628 |
| 71 | 71 | 0.00918 |
| 72 | 72 | 0.272 |
| 73 | 73 | 0.0249 |
| 74 | 74 | 0.869 |
| 75 | 75 | 0.0263 |
| 76 | 76 | 0.332 |
| 77 | 77 | 0.118 |
| 78 | 78 | 0.00189 |
| 79 | 79 | 0.361 |
| 8 | 8 | 0.0604 |
| 80 | 80 | 0.437 |
| 81 | 81 | 0.509 |
| 82 | 82 | 0.636 |
| 83 | 83 | 0.0468 |
| 84 | 84 | 0.572 |
| 85 | 85 | 0.366 |
| 86 | 86 | 0.211 |
| 87 | 87 | 1.07957e-4 |
| 88 | 88 | 0.628 |
| 89 | 89 | 0.165 |
| 9 | 9 | 0.366 |
| 90 | 90 | 0.0702 |
| 91 | 91 | 0.737 |
| 92 | 92 | 0.448 |
| 93 | 93 | 0.904 |
| 94 | 94 | 0.209 |
| 95 | 95 | 0.0116 |
| 96 | 96 | 0.774 |
| 97 | 97 | 0.744 |
| 98 | 98 | 0.222 |
| 99 | 99 | 0.588 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12314
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010154 human thalamus - adult donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001897 (dorsal plus ventral thalamus)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0010225 (thalamic complex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010154 (human thalamus - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
