FFCP PHASE1:Mm9::chr11:110813223..110813228,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1020 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:110813223..110813228,- | |||
|description=CAGE_peak_at_chr11:110813223..110813228,- | |description=CAGE_peak_at_chr11:110813223..110813228,- | ||
|id=chr11:110813223..110813228,- | |id=chr11:110813223..110813228,- | ||
|ontology_enrichment_celltype=CL:0002319!1.79e-19!43;CL:0000034!6.39e-19!97;CL:0000723!1.57e-18!91;CL:0000048!1.57e-18!91;CL:0000221!1.75e-18!44;CL:0000133!1.75e-18!44;CL:0000055!1.30e-17!50;CL:0000548!8.50e-17!115;CL:0000004!8.50e-17!115;CL:0000255!8.50e-17!115;CL:0000540!2.64e-16!33;CL:0000047!2.64e-16!33;CL:0000031!2.64e-16!33;CL:0000404!2.64e-16!33;CL:0002371!1.24e-15!118;CL:0000144!1.96e-15!121;CL:0000012!1.96e-15!121;CL:0000393!2.17e-15!39;CL:0000211!2.17e-15!39;CL:0000117!2.12e-13!23;CL:0000337!2.12e-13!23;CL:0002321!3.36e-13!70;CL:0000220!3.36e-13!70;CL:0000219!2.57e-08!54 | |ontology_enrichment_celltype=CL:0002319!1.79e-19!43;CL:0000034!6.39e-19!97;CL:0000723!1.57e-18!91;CL:0000048!1.57e-18!91;CL:0000221!1.75e-18!44;CL:0000133!1.75e-18!44;CL:0000055!1.30e-17!50;CL:0000548!8.50e-17!115;CL:0000004!8.50e-17!115;CL:0000255!8.50e-17!115;CL:0000540!2.64e-16!33;CL:0000047!2.64e-16!33;CL:0000031!2.64e-16!33;CL:0000404!2.64e-16!33;CL:0002371!1.24e-15!118;CL:0000144!1.96e-15!121;CL:0000012!1.96e-15!121;CL:0000393!2.17e-15!39;CL:0000211!2.17e-15!39;CL:0000117!2.12e-13!23;CL:0000337!2.12e-13!23;CL:0002321!3.36e-13!70;CL:0000220!3.36e-13!70;CL:0000219!2.57e-08!54 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.53e-29,43;CL:0000221,5.70e-28,44;CL:0000133,5.70e-28,44;CL:0000723,8.63e-27,91;CL:0000048,8.63e-27,91;CL:0000034,7.09e-26,97;CL:0000540,6.05e-25,33;CL:0000047,6.05e-25,33;CL:0000031,6.05e-25,33;CL:0000404,6.05e-25,33;CL:0002321,7.41e-25,70;CL:0000393,9.59e-24,39;CL:0000211,9.59e-24,39;CL:0000117,6.21e-20,23;CL:0000337,6.21e-20,23;CL:0000219,8.53e-10,54;CL:0002320,2.59e-07,46;CL:0000134,2.59e-07,46;CL:0000107,3.21e-07,9;CL:0002453,5.57e-07,8 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.37e-20!73;UBERON:0005743!2.37e-20!73;UBERON:0000073!6.35e-20!75;UBERON:0001016!6.35e-20!75;UBERON:0002020!6.43e-13!34;UBERON:0001049!3.57e-11!52;UBERON:0005068!3.57e-11!52;UBERON:0006241!3.57e-11!52;UBERON:0007135!3.57e-11!52;UBERON:0004121!4.44e-11!102;UBERON:0000924!4.44e-11!102;UBERON:0006601!4.44e-11!102;UBERON:0000955!9.85e-11!50;UBERON:0006238!9.85e-11!50;UBERON:0002791!1.32e-10!29;UBERON:0003528!1.32e-10!29;UBERON:0001893!1.32e-10!29;UBERON:0002616!1.64e-10!49;UBERON:0000956!1.76e-09!21;UBERON:0001869!1.76e-09!21;UBERON:0000203!1.76e-09!21;UBERON:0002346!7.88e-09!71;UBERON:0003075!7.88e-09!71;UBERON:0007284!7.88e-09!71;UBERON:0002780!1.71e-08!39;UBERON:0001890!1.71e-08!39;UBERON:0006240!1.71e-08!39;UBERON:0002619!2.28e-08!17;UBERON:0003080!2.89e-08!40;UBERON:0000033!6.55e-08!63;UBERON:0000153!1.39e-07!94;UBERON:0002021!6.83e-07!10;UBERON:0000411!6.83e-07!10;UBERON:0001950!6.83e-07!10;UBERON:0003056!7.66e-07!49;UBERON:0007811!8.38e-07!86 | |ontology_enrichment_uberon=UBERON:0001017!2.37e-20!73;UBERON:0005743!2.37e-20!73;UBERON:0000073!6.35e-20!75;UBERON:0001016!6.35e-20!75;UBERON:0002020!6.43e-13!34;UBERON:0001049!3.57e-11!52;UBERON:0005068!3.57e-11!52;UBERON:0006241!3.57e-11!52;UBERON:0007135!3.57e-11!52;UBERON:0004121!4.44e-11!102;UBERON:0000924!4.44e-11!102;UBERON:0006601!4.44e-11!102;UBERON:0000955!9.85e-11!50;UBERON:0006238!9.85e-11!50;UBERON:0002791!1.32e-10!29;UBERON:0003528!1.32e-10!29;UBERON:0001893!1.32e-10!29;UBERON:0002616!1.64e-10!49;UBERON:0000956!1.76e-09!21;UBERON:0001869!1.76e-09!21;UBERON:0000203!1.76e-09!21;UBERON:0002346!7.88e-09!71;UBERON:0003075!7.88e-09!71;UBERON:0007284!7.88e-09!71;UBERON:0002780!1.71e-08!39;UBERON:0001890!1.71e-08!39;UBERON:0006240!1.71e-08!39;UBERON:0002619!2.28e-08!17;UBERON:0003080!2.89e-08!40;UBERON:0000033!6.55e-08!63;UBERON:0000153!1.39e-07!94;UBERON:0002021!6.83e-07!10;UBERON:0000411!6.83e-07!10;UBERON:0001950!6.83e-07!10;UBERON:0003056!7.66e-07!49;UBERON:0007811!8.38e-07!86 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.22e-25,73;UBERON:0001016,9.27e-24,75;UBERON:0002020,4.54e-19,34;UBERON:0004121,1.44e-15,95;UBERON:0000924,1.44e-15,95;UBERON:0006601,1.44e-15,95;UBERON:0003528,1.74e-15,29;UBERON:0002791,1.74e-15,29;UBERON:0001893,1.74e-15,29;UBERON:0000073,2.63e-14,54;UBERON:0000956,1.01e-12,21;UBERON:0001869,1.01e-12,21;UBERON:0000203,1.01e-12,21;UBERON:0001049,1.40e-11,52;UBERON:0005068,1.40e-11,52;UBERON:0006241,1.40e-11,52;UBERON:0007135,1.40e-11,52;UBERON:0002619,2.29e-11,17;UBERON:0002780,3.31e-10,39;UBERON:0001890,3.31e-10,39;UBERON:0006240,3.31e-10,39;UBERON:0002346,5.54e-10,64;UBERON:0003075,5.54e-10,64;UBERON:0007284,5.54e-10,64;UBERON:0002021,7.66e-10,10;UBERON:0000411,7.66e-10,10;UBERON:0001950,7.66e-10,10;UBERON:0003080,9.70e-10,40;UBERON:0000955,1.86e-09,47;UBERON:0006238,1.86e-09,47;UBERON:0002616,3.75e-09,46;UBERON:0010371,2.08e-07,73;UBERON:0002384,2.59e-07,46;UBERON:0002410,3.21e-07,9;UBERON:0011216,5.68e-07,194 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0.467225281191051,0.774739940649458,0.281577444303333,0.70219357896598,1.36974374580404,0.558405112967355,1.19840510951844,0.34968160967599,11.9919514253639,0.809901069559304,2.79824751251259,0.946386496074713,1.37114433605739,1.69755860719212,0.680346321208558,0.992909512008853,1.82839852397255,0,0,0,0.430761996159075,0.215471232685889,0.190023419456374,0,0,34.9266870402797,96.5651716507775,15.8481681015439,0.288851619751275,0.332469290716985,1.02084678131185,0,0.7813353445238,0,0,0,0,0.125896817975577,0.405507724878058,0.367093504323363,2.34717403304412,7.63088047331563,1.31811709640683,6.41618666945135,7.97922603264566,10.062679505548,0.335565212115473,0,1.34437519656986,2.82985379639542,4.01146815914259,3.09403255366465,5.86717736492834,4.7609188134483,19.6487735086916,3.72728985276045,8.89294796111139,2.6996991518442,0.988866362566974,1.4209602298922,3.59520132622086,4.61061966385865,3.7328260431052,6.34527910158946,8.2026734927039,3.42781181284564,6.18431914664518,6.36952155917761,8.4344014496048,22.9804696652505,7.70811166995721,9.70423769447427,8.90917892886212,5.01167893374737,9.5147149346506,3.64639359389732,6.14202597803038,2.8138130501584,9.16789486660861,4.71405736757868,7.11858403995515,3.54158947068071,0.530083353332288,0.529000920747499,3.18850937571846,0,2.03991400112325,3.2382191498269,7.79731700937203,6.72040330646003,0,0,0.259786004602869,0,0.14084341977668,0,0,0,1.73192832808971,1.52015919285059,3.53867111510348,0.22836775943812,0.258937883647172,0.593768556259299,0.867426633830679,0,0,0.301445281105245,0.470354828542819,0.125666591329675,0.247194967734374,0.144599356919912,0,0.323533699894818,0,0,0,0.878342391034642,0.41889341362691,1.02182822083437,0.239630249011841,1.79970819298022,1.01656181658452,0.449371918214468,0,0.251308704225729,0.521472960576829,0,0.20778804455956,0.648965052271031,0.916554274652847,0.746441823660558,0,0,0.910843100738926,0.919608417733892,0.900310649026746,0.753524089178575,0.680364991513279,0.12811372028485,0.843315521037559,0,1.5089759505299,0.756424320671277,1.23165786914764,1.31517439456545,0.834141747676794,2.78601733217733,0.61734640922383,0,1.40442637462647,0.51469581422943,1.42081749697796,0.621377317606506,0.469052119962192,0.36012412292203,0.473489471170421,0.196764231747404,0.154267112887378,0.232533944750408,0,0.934122738937356,0.16455984991348,0.492502392237286,0.810688095458557,0.146199987425332,0.439100230582101,0.402619256281115,0.630869845692382,0.411618449517138,0,0,1.49301775374664,0.928946687441754,0.38660238396628,0.201683524623343,1.33426826306922,0,0,0.329397909448022,0.251335208800269,0.596869416123452,0.38992817423824,0,0.216138049874694,0.199141273254367,1.51734320762465,0.913988100877831,0,0.203651327845314,0.387904974335251,0.701358198903186,0.379419222745544,0.147610147979602,0.31399745568275,0.123397163921801,0.592905254174298,0.500535317148282,0.393117990226406,0.224862112384854,0.405720242777006,0.241177159752417,0,0.287696137450811,0.648540907100142,0,0,0.372140947668503,0.312037673114561,0.757736633841335,0.717589654087649,0,1.29327233116623,0.947457058852424,0.651859905768103,0.848725428875941,0.234690248288502,0.167506257441816,1.19021820443007,0.390267295715598,0.157635144106191,0.221464689648775,0,0.491589944147214,0,0,7.53956419696361,0.54390568381871,0,0,0.80275294993896,0.820481806145422,0,0.252470927204373,6.62567260774139,3.90438744296638,7.75524231838076,3.58453196928828,4.45597348164788,4.81230102341015,3.23848561339915,5.55286130031493,1.18586333383957,1.28528526568723,0.851640511249612,0.35613120733451,0.325773918707152,0.329940245945071,0,1.21390318077491,0.906970670894253,0.565815239267694,0,0,0,0,0,0,0,0,0,0.900305470156551,0.776152102696527,0.643011105094777,0.709360934569094,0.891844088010353,0.164549020602121,1.8267896946876,0.704015124191131,0.42366414172764,0.882113592219848,0.65954501176592,0.161464426695906,0.0603129249281559,0.238744688006273,0,0.291480836629851,0.927126510052548,0.854354403989263,0.412773735926445,0,0.565105371014073,0.27338845544205,0,0.339956859987711,0.419854356970974,0.967399816630967,0.954670618015114,1.42351197111511,0.609958401380546,0.432021363287205,0.418176592028937,0.436725127492355,0,0.247960367176008,0,0.259229946583586,0,1.12738587736838,0.598066184175915,0.165458490457098,0.388902376688095,0.258319646955462,0.675824501963113,0.58678619322877,0.2604087696879,0.734015410979976,1.69108884578204,0.288030006257865,1.58005560314089,0.202725215290164,0.513554785824136,0.51968329191118,2.8644271306797,0.79472541912506,0.961563596159751,0.295379054349154,1.41353029927407,0.685861259894999,0.907435666231565,1.36441033035653,0.577271049841977,0.350630706544707,1.13365191807606,3.55177525398503,0.717710852875806,1.34307693091263,0.19318959403219,0.563047426353546,1.09890974560359,1.2862102744744,0,9.60078132449013,6.44455331110048,2.86447756719698,9.96748457593388,5.48066015816514,8.3093328712867,14.1754725048679,7.65546045481175,7.25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| ||
|short_description=p@chr11:110813223..110813228,- | |short_description=p@chr11:110813223..110813228,- | ||
}} | }} |
Latest revision as of 09:33, 5 August 2015
Short description: | p@chr11:110813223..110813228, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:110813223..110813228, - |
Coexpression cluster: | MCL_coexpression_mm9:1020 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.53e-29 | 43 |
ectodermal cell | 5.70e-28 | 44 |
neurectodermal cell | 5.70e-28 | 44 |
somatic stem cell | 8.63e-27 | 91 |
multi fate stem cell | 8.63e-27 | 91 |
stem cell | 7.09e-26 | 97 |
neuron | 6.05e-25 | 33 |
neuronal stem cell | 6.05e-25 | 33 |
neuroblast | 6.05e-25 | 33 |
electrically signaling cell | 6.05e-25 | 33 |
embryonic cell | 7.41e-25 | 70 |
electrically responsive cell | 9.59e-24 | 39 |
electrically active cell | 9.59e-24 | 39 |
CNS neuron (sensu Vertebrata) | 6.21e-20 | 23 |
neuroblast (sensu Vertebrata) | 6.21e-20 | 23 |
motile cell | 8.53e-10 | 54 |
connective tissue cell | 2.59e-07 | 46 |
mesenchymal cell | 2.59e-07 | 46 |
autonomic neuron | 3.21e-07 | 9 |
oligodendrocyte precursor cell | 5.57e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.22e-25 | 73 |
nervous system | 9.27e-24 | 75 |
gray matter | 4.54e-19 | 34 |
ectoderm-derived structure | 1.44e-15 | 95 |
ectoderm | 1.44e-15 | 95 |
presumptive ectoderm | 1.44e-15 | 95 |
brain grey matter | 1.74e-15 | 29 |
regional part of telencephalon | 1.74e-15 | 29 |
telencephalon | 1.74e-15 | 29 |
regional part of nervous system | 2.63e-14 | 54 |
cerebral cortex | 1.01e-12 | 21 |
cerebral hemisphere | 1.01e-12 | 21 |
pallium | 1.01e-12 | 21 |
neural tube | 1.40e-11 | 52 |
neural rod | 1.40e-11 | 52 |
future spinal cord | 1.40e-11 | 52 |
neural keel | 1.40e-11 | 52 |
regional part of cerebral cortex | 2.29e-11 | 17 |
regional part of forebrain | 3.31e-10 | 39 |
forebrain | 3.31e-10 | 39 |
future forebrain | 3.31e-10 | 39 |
neurectoderm | 5.54e-10 | 64 |
neural plate | 5.54e-10 | 64 |
presumptive neural plate | 5.54e-10 | 64 |
occipital lobe | 7.66e-10 | 10 |
visual cortex | 7.66e-10 | 10 |
neocortex | 7.66e-10 | 10 |
anterior neural tube | 9.70e-10 | 40 |
brain | 1.86e-09 | 47 |
future brain | 1.86e-09 | 47 |
regional part of brain | 3.75e-09 | 46 |
ecto-epithelium | 2.08e-07 | 73 |
connective tissue | 2.59e-07 | 46 |
autonomic nervous system | 3.21e-07 | 9 |
organ system subdivision | 5.68e-07 | 194 |