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MCL coexpression mm9:2394: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!1.76e-11!23;CL:0000337!1.76e-11!23;CL:0000540!1.62e-07!33;CL:0000047!1.62e-07!33;CL:0000031!1.62e-07!33;CL:0000404!1.62e-07!33;CL:0002609!6.15e-07!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003056!7.47e-13!49;UBERON:0002346!1.74e-12!64;UBERON:0003075!1.74e-12!64;UBERON:0007284!1.74e-12!64;UBERON:0010371!5.14e-10!73;UBERON:0000073!6.12e-09!54;UBERON:0001049!2.03e-08!52;UBERON:0005068!2.03e-08!52;UBERON:0006241!2.03e-08!52;UBERON:0007135!2.03e-08!52;UBERON:0004121!2.45e-08!95;UBERON:0000924!2.45e-08!95;UBERON:0006601!2.45e-08!95;UBERON:0003080!4.19e-08!40;UBERON:0010314!5.16e-08!92;UBERON:0002780!6.83e-08!39;UBERON:0001890!6.83e-08!39;UBERON:0006240!6.83e-08!39;UBERON:0001017!7.71e-08!73;UBERON:0001016!2.48e-07!75;UBERON:0002020!6.60e-07!34;UBERON:0000970!8.45e-07!9;UBERON:0000019!8.45e-07!9;UBERON:0000047!8.45e-07!9;UBERON:0010312!8.45e-07!9;UBERON:0004088!8.45e-07!9;UBERON:0002104!8.45e-07!9;UBERON:0001456!8.45e-07!9;UBERON:0003072!8.45e-07!9;UBERON:0004128!8.45e-07!9;UBERON:0003071!8.45e-07!9;UBERON:0002616!8.86e-07!46
}}
}}

Revision as of 18:24, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr4:122676078..122676090,+p5@Mycl1
Mm9::chr9:58047540..58047563,-p@chr9:58047540..58047563
-
Mm9::chr9:58049873..58049882,-p18@Islr2
Mm9::chr9:58049968..58049997,-p9@Islr2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.76e-1123
neuroblast (sensu Vertebrata)1.76e-1123
neuron1.62e-0733
neuronal stem cell1.62e-0733
neuroblast1.62e-0733
electrically signaling cell1.62e-0733
neuron of cerebral cortex6.15e-076

Uber Anatomy
Ontology termp-valuen
pre-chordal neural plate7.47e-1349
neurectoderm1.74e-1264
neural plate1.74e-1264
presumptive neural plate1.74e-1264
ecto-epithelium5.14e-1073
regional part of nervous system6.12e-0954
neural tube2.03e-0852
neural rod2.03e-0852
future spinal cord2.03e-0852
neural keel2.03e-0852
ectoderm-derived structure2.45e-0895
ectoderm2.45e-0895
presumptive ectoderm2.45e-0895
anterior neural tube4.19e-0840
structure with developmental contribution from neural crest5.16e-0892
regional part of forebrain6.83e-0839
forebrain6.83e-0839
future forebrain6.83e-0839
central nervous system7.71e-0873
nervous system2.48e-0775
gray matter6.60e-0734
eye8.45e-079
camera-type eye8.45e-079
simple eye8.45e-079
immature eye8.45e-079
ocular region8.45e-079
visual system8.45e-079
face8.45e-079
optic cup8.45e-079
optic vesicle8.45e-079
eye primordium8.45e-079
regional part of brain8.86e-0746


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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