FFCP PHASE1:Mm9::chr18:46358492..46358517,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=28105|HGNC=|MCL_coexpression_id=0|UniProt=E9Q3A0,Q80WG7|association_with_transcript=-20bp_to_ENSMUST00000167364,NM_001170855,uc012bcp.1_5end|description=CAGE_peak_2_at_Trim36_5end|id=chr18:46358492..46358517,-|ontology_enrichment_celltype=CL:0000540!9.11e-14!33;CL:0000047!9.11e-14!33;CL:0000031!9.11e-14!33;CL:0000404!9.11e-14!33;CL:0000117!2.70e-13!23;CL:0000337!2.70e-13!23;CL:0000393!1.08e-09!39;CL:0000211!1.08e-09!39;CL:0000221!3.19e-09!44;CL:0000133!3.19e-09!44;CL:0002319!5.89e-09!43|ontology_enrichment_celltype_v019_2=CL:0000117,1.11e-32,23;CL:0000337,1.11e-32,23;CL:0000540,8.00e-24,33;CL:0000047,8.00e-24,33;CL:0000031,8.00e-24,33;CL:0000404,8.00e-24,33;CL:0000393,2.11e-19,39;CL:0000211,2.11e-19,39;CL:0002319,3.84e-17,43;CL:0000221,1.21e-16,44;CL:0000133,1.21e-16,44;CL:0002321,7.48e-11,70;CL:0002612,3.28e-08,3;CL:0002613,7.75e-08,3;CL:0002608,2.44e-07,3;CL:0002610,9.34e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!6.14e-10!102;UBERON:0000924!6.14e-10!102;UBERON:0006601!6.14e-10!102;UBERON:0000073!8.14e-10!75;UBERON:0001016!8.14e-10!75;UBERON:0001017!1.52e-09!73;UBERON:0005743!1.52e-09!73;UBERON:0002346!3.35e-09!71;UBERON:0003075!3.35e-09!71;UBERON:0007284!3.35e-09!71;UBERON:0002020!3.56e-09!34;UBERON:0000033!2.92e-08!63;UBERON:0001049!1.68e-07!52;UBERON:0005068!1.68e-07!52;UBERON:0006241!1.68e-07!52;UBERON:0007135!1.68e-07!52;UBERON:0003056!7.86e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0002240,8.32e-15,6;UBERON:0005174,8.32e-15,6;UBERON:0001137,8.32e-15,6;UBERON:0001017,7.54e-13,73;UBERON:0001948,9.34e-13,5;UBERON:0002315,9.34e-13,5;UBERON:0004121,1.30e-12,95;UBERON:0000924,1.30e-12,95;UBERON:0006601,1.30e-12,95;UBERON:0000073,1.55e-12,54;UBERON:0001016,2.35e-12,75;UBERON:0002346,2.43e-12,64;UBERON:0003075,2.43e-12,64;UBERON:0007284,2.43e-12,64;UBERON:0002020,2.57e-12,34;UBERON:0003076,4.70e-12,12;UBERON:0003057,4.70e-12,12;UBERON:0001049,1.43e-10,52;UBERON:0005068,1.43e-10,52;UBERON:0006241,1.43e-10,52;UBERON:0007135,1.43e-10,52;UBERON:0010371,3.49e-10,73;UBERON:0002257,3.28e-08,3;UBERON:0002420,3.57e-07,8;UBERON:0007245,3.57e-07,8;UBERON:0010009,3.57e-07,8;UBERON:0010011,3.57e-07,8;UBERON:0000454,3.57e-07,8;UBERON:0010314,4.77e-07,92;UBERON:0004684,9.34e-07,3;UBERON:0002275,9.34e-07,3|phase1_expression=0.640595388419176,0,1.36499771816861,0,1.00179145989269,0.503637815735669,0,0,0.281577444303333,0.234064526321993,0,0,0.171200729931206,0,0,0,0,0.473193248037357,0.274228867211478,0.42438965179803,89.3804979487743,0.198581902401771,0,0.47997726838022,0,0.57423196411502,0.430761996159075,0,0,0.504060259519861,0,0,0,0,0,0.332469290716985,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0.167782606057736,0,0,0.257259436035947,0,0,2.63011399117477,3.1739458756322,0.633831403506179,0,0,0,0.988866362566974,0,0,0,0.829516898467821,1.4850653216486,0.841299845405528,6.56997264128748,5.07997644188711,1.34739879136449,1.53352753629178,2.75765635983006,1.10115880999389,1.14918604276669,1.38245879930619,2.76961204233407,1.9212405156506,3.12548022334056,1.95428099300967,0,1.68078072554491,3.83017161115768,4.9830088279686,2.79599168737951,0.37863096666592,0.377857800533928,0.289864488701678,0,0,0,0,0,9.55022056895913,0.170430322578058,0.259786004602869,0,0.563373679106722,0,0,0,0,0,0,12.5602267690966,0.258937883647172,0.445326417194474,0.173485326766136,0,0.230615497256059,0.150722640552623,0.470354828542819,0,0,0,0,0,0,0,0,0.585561594023094,0,0.510914110417183,0.11981512450592,0.599902730993408,0.889491589511453,0.149790639404823,0,0.502617408451458,0.869121600961382,0.255715457330331,0.62336413367868,0.324482526135515,0.203678727700633,0.622034853050465,2.27450482590307,1.05220927943237,0.130120442962704,1.14951052216736,1.44049703844279,0.90422890701429,0.816437989815934,0.2562274405697,0.562210347358373,1.03481348295606,0.646703978798527,0.189106080167819,0,0,0.278047249225598,0,0.205782136407943,0,0,0.772043721344145,0.568326998791185,0.207125772535502,0,0.180062061461015,0,0.196764231747404,0,0.232533944750408,0,0.116765342367169,0,0,0.243206428637567,0,0,0.134206418760372,0.630869845692382,1.23485534855141,0,0.264450566663544,0.213288250535234,0,0.128867461322093,0,0.22237804384487,0.380451252225118,0.474529061544512,0.164698954724011,0,0,0.38992817423824,0,0.216138049874694,0,0.189667900953082,0.114248512609729,0,0.203651327845314,0,0.420814919341911,0.316182685621286,0,0.156998727841375,0.246794327843601,0,0.166845105716094,0,0,0.202860121388503,0.241177159752417,0,0,0.324270453550071,0,0,0,0,0,0,0,0,0.189491411770485,0.162964976442026,0.339490171550376,0.234690248288502,0,0.238043640886014,0.390267295715598,0.157635144106191,0.664394068946325,0.318909537314974,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,2.0871576698413,2.34423373184406,0,0,0.315508219416257,0.780877488593277,0,0.238968797952552,0.891194696329576,0.283076530788832,0.404810701674894,1.46127928955656,0.395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| ||
|EntrezGene=28105 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=E9Q3A0,Q80WG7 | |||
|association_with_transcript=-20bp_to_ENSMUST00000167364,NM_001170855,uc012bcp.1_5end | |||
|description=CAGE_peak_2_at_Trim36_5end | |||
|id=chr18:46358492..46358517,- | |||
|ontology_enrichment_celltype=CL:0000540!9.11e-14!33;CL:0000047!9.11e-14!33;CL:0000031!9.11e-14!33;CL:0000404!9.11e-14!33;CL:0000117!2.70e-13!23;CL:0000337!2.70e-13!23;CL:0000393!1.08e-09!39;CL:0000211!1.08e-09!39;CL:0000221!3.19e-09!44;CL:0000133!3.19e-09!44;CL:0002319!5.89e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.11e-32,23;CL:0000337,1.11e-32,23;CL:0000540,8.00e-24,33;CL:0000047,8.00e-24,33;CL:0000031,8.00e-24,33;CL:0000404,8.00e-24,33;CL:0000393,2.11e-19,39;CL:0000211,2.11e-19,39;CL:0002319,3.84e-17,43;CL:0000221,1.21e-16,44;CL:0000133,1.21e-16,44;CL:0002321,7.48e-11,70;CL:0002612,3.28e-08,3;CL:0002613,7.75e-08,3;CL:0002608,2.44e-07,3;CL:0002610,9.34e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.14e-10!102;UBERON:0000924!6.14e-10!102;UBERON:0006601!6.14e-10!102;UBERON:0000073!8.14e-10!75;UBERON:0001016!8.14e-10!75;UBERON:0001017!1.52e-09!73;UBERON:0005743!1.52e-09!73;UBERON:0002346!3.35e-09!71;UBERON:0003075!3.35e-09!71;UBERON:0007284!3.35e-09!71;UBERON:0002020!3.56e-09!34;UBERON:0000033!2.92e-08!63;UBERON:0001049!1.68e-07!52;UBERON:0005068!1.68e-07!52;UBERON:0006241!1.68e-07!52;UBERON:0007135!1.68e-07!52;UBERON:0003056!7.86e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,8.32e-15,6;UBERON:0005174,8.32e-15,6;UBERON:0001137,8.32e-15,6;UBERON:0001017,7.54e-13,73;UBERON:0001948,9.34e-13,5;UBERON:0002315,9.34e-13,5;UBERON:0004121,1.30e-12,95;UBERON:0000924,1.30e-12,95;UBERON:0006601,1.30e-12,95;UBERON:0000073,1.55e-12,54;UBERON:0001016,2.35e-12,75;UBERON:0002346,2.43e-12,64;UBERON:0003075,2.43e-12,64;UBERON:0007284,2.43e-12,64;UBERON:0002020,2.57e-12,34;UBERON:0003076,4.70e-12,12;UBERON:0003057,4.70e-12,12;UBERON:0001049,1.43e-10,52;UBERON:0005068,1.43e-10,52;UBERON:0006241,1.43e-10,52;UBERON:0007135,1.43e-10,52;UBERON:0010371,3.49e-10,73;UBERON:0002257,3.28e-08,3;UBERON:0002420,3.57e-07,8;UBERON:0007245,3.57e-07,8;UBERON:0010009,3.57e-07,8;UBERON:0010011,3.57e-07,8;UBERON:0000454,3.57e-07,8;UBERON:0010314,4.77e-07,92;UBERON:0004684,9.34e-07,3;UBERON:0002275,9.34e-07,3 | |||
|phase1_expression=0.640595388419176,0,1.36499771816861,0,1.00179145989269,0.503637815735669,0,0,0.281577444303333,0.234064526321993,0,0,0.171200729931206,0,0,0,0,0.473193248037357,0.274228867211478,0.42438965179803,89.3804979487743,0.198581902401771,0,0.47997726838022,0,0.57423196411502,0.430761996159075,0,0,0.504060259519861,0,0,0,0,0,0.332469290716985,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0.167782606057736,0,0,0.257259436035947,0,0,2.63011399117477,3.1739458756322,0.633831403506179,0,0,0,0.988866362566974,0,0,0,0.829516898467821,1.4850653216486,0.841299845405528,6.56997264128748,5.07997644188711,1.34739879136449,1.53352753629178,2.75765635983006,1.10115880999389,1.14918604276669,1.38245879930619,2.76961204233407,1.9212405156506,3.12548022334056,1.95428099300967,0,1.68078072554491,3.83017161115768,4.9830088279686,2.79599168737951,0.37863096666592,0.377857800533928,0.289864488701678,0,0,0,0,0,9.55022056895913,0.170430322578058,0.259786004602869,0,0.563373679106722,0,0,0,0,0,0,12.5602267690966,0.258937883647172,0.445326417194474,0.173485326766136,0,0.230615497256059,0.150722640552623,0.470354828542819,0,0,0,0,0,0,0,0,0.585561594023094,0,0.510914110417183,0.11981512450592,0.599902730993408,0.889491589511453,0.149790639404823,0,0.502617408451458,0.869121600961382,0.255715457330331,0.62336413367868,0.324482526135515,0.203678727700633,0.622034853050465,2.27450482590307,1.05220927943237,0.130120442962704,1.14951052216736,1.44049703844279,0.90422890701429,0.816437989815934,0.2562274405697,0.562210347358373,1.03481348295606,0.646703978798527,0.189106080167819,0,0,0.278047249225598,0,0.205782136407943,0,0,0.772043721344145,0.568326998791185,0.207125772535502,0,0.180062061461015,0,0.196764231747404,0,0.232533944750408,0,0.116765342367169,0,0,0.243206428637567,0,0,0.134206418760372,0.630869845692382,1.23485534855141,0,0.264450566663544,0.213288250535234,0,0.128867461322093,0,0.22237804384487,0.380451252225118,0.474529061544512,0.164698954724011,0,0,0.38992817423824,0,0.216138049874694,0,0.189667900953082,0.114248512609729,0,0.203651327845314,0,0.420814919341911,0.316182685621286,0,0.156998727841375,0.246794327843601,0,0.166845105716094,0,0,0.202860121388503,0.241177159752417,0,0,0.324270453550071,0,0,0,0,0,0,0,0,0.189491411770485,0.162964976442026,0.339490171550376,0.234690248288502,0,0.238043640886014,0.390267295715598,0.157635144106191,0.664394068946325,0.318909537314974,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0,0,2.0871576698413,2.34423373184406,0,0,0.315508219416257,0.780877488593277,0,0.238968797952552,0.891194696329576,0.283076530788832,0.404810701674894,1.46127928955656,0.395287777946524,0,0.141940085208269,0,0.162886959353576,0.494910368917606,0,0,0.604647113929502,0.377210159511796,0.295301892880773,0,0,0,0.356497378384721,0,0,0,0,0,0,0,0.177340233642274,0.535106452806212,0.493647061806363,0,0.23467170806371,0,0,0,0.161464426695906,0.120625849856312,0.238744688006273,0.164140899745061,0.291480836629851,2.59595422814714,0,0,0,0,0.136694227721025,0,1.35982743995084,0.839708713941948,0.690999869022119,0,0.158167996790568,0.609958401380546,0.216010681643603,0,0,0.134864346384821,0.247960367176008,0,0.648074866458964,0.621339313086926,679.249991114449,0.149516546043979,0,0.583353565032143,0.129159823477731,0.337912250981556,0.469428954583016,0.13020438484395,0.314578033277133,8.93861247056222,233.592335075129,0.316011120628178,0,0.205421914329655,0.389762468933385,0,0,0,0,0.100966449948148,0.15241361331,0.100826185136841,0.292373642219257,0,0,0,0,0.269141569828427,0.503653849092235,0.386379188064381,0,0.36630324853453,0,0,0.564751842617067,0.460325236507177,0,0.343706364687375,0,0.755393897389701,0.675022500231806,0.45032120322422,0.906284817968409,0.51776031175182,0.518936737920883,0.798049746802062,0.682934423016537,0.729320151204882,0.419226325255965,0.183843508450014,0,0.412070114477788,0,1.01078884705519,0.50695859978048,0.377252682772152,0.280924522409647,0.704276676453562,0.631790158511746,0,1.0429589335037,0.38581844092741,0.412085900803307,0.441596760403192,0.342869252385415,0.887379030796687,0.238436189947321,0.872078499793971,0.282328141245992,0.676916863133412,0.73171189149109,0,0,0,0.355905054372522,0.591026894253381,0.409231043169689,0.309873682371932,0.578719832943424,0.999242311751784,0.233931608445408,0.429742108096597,0.57386499620653,0.441182838239031,0.231867835620421 | |||
|short_description=p2@Trim36 | |||
}} |
Revision as of 16:16, 13 September 2013
Short description: | p2@Trim36 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Trim36_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -20bp_to_ENSMUST00000167364, NM_001170855, uc012bcp.1_5end |
EntrezGene: | Trim36 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.11e-32 | 23 |
neuroblast (sensu Vertebrata) | 1.11e-32 | 23 |
neuron | 8.00e-24 | 33 |
neuronal stem cell | 8.00e-24 | 33 |
neuroblast | 8.00e-24 | 33 |
electrically signaling cell | 8.00e-24 | 33 |
electrically responsive cell | 2.11e-19 | 39 |
electrically active cell | 2.11e-19 | 39 |
neural cell | 3.84e-17 | 43 |
ectodermal cell | 1.21e-16 | 44 |
neurectodermal cell | 1.21e-16 | 44 |
embryonic cell | 7.48e-11 | 70 |
neuron of the ventral spinal cord | 3.28e-08 | 3 |
striatum neuron | 7.75e-08 | 3 |
hippocampal neuron | 2.44e-07 | 3 |
raphe nuclei neuron | 9.34e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 8.32e-15 | 6 |
dorsal region element | 8.32e-15 | 6 |
dorsum | 8.32e-15 | 6 |
central nervous system | 7.54e-13 | 73 |
regional part of spinal cord | 9.34e-13 | 5 |
gray matter of spinal cord | 9.34e-13 | 5 |
ectoderm-derived structure | 1.30e-12 | 95 |
ectoderm | 1.30e-12 | 95 |
presumptive ectoderm | 1.30e-12 | 95 |
regional part of nervous system | 1.55e-12 | 54 |
nervous system | 2.35e-12 | 75 |
neurectoderm | 2.43e-12 | 64 |
neural plate | 2.43e-12 | 64 |
presumptive neural plate | 2.43e-12 | 64 |
gray matter | 2.57e-12 | 34 |
posterior neural tube | 4.70e-12 | 12 |
chordal neural plate | 4.70e-12 | 12 |
neural tube | 1.43e-10 | 52 |
neural rod | 1.43e-10 | 52 |
future spinal cord | 1.43e-10 | 52 |
neural keel | 1.43e-10 | 52 |
ecto-epithelium | 3.49e-10 | 73 |
ventral horn of spinal cord | 3.28e-08 | 3 |
basal ganglion | 3.57e-07 | 8 |
nuclear complex of neuraxis | 3.57e-07 | 8 |
aggregate regional part of brain | 3.57e-07 | 8 |
collection of basal ganglia | 3.57e-07 | 8 |
cerebral subcortex | 3.57e-07 | 8 |
structure with developmental contribution from neural crest | 4.77e-07 | 92 |
raphe nuclei | 9.34e-07 | 3 |
reticular formation | 9.34e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.