FFCP PHASE1:Mm9::chr2:168032375..168032388,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11538|HGNC=|UniProt=A2BDX0|association_with_transcript=33bp_to_ENSMUST00000057793_5end|description=CAGE_peak_4_at_Adnp_5end|id=chr2:168032375..168032388,-|ontology_enrichment_celltype=CL:0000540!1.11e-13!33;CL:0000047!1.11e-13!33;CL:0000031!1.11e-13!33;CL:0000404!1.11e-13!33;CL:0000117!3.82e-10!23;CL:0000337!3.82e-10!23;CL:0000393!3.99e-10!39;CL:0000211!3.99e-10!39;CL:0002319!6.86e-08!43;CL:0000221!7.88e-08!44;CL:0000133!7.88e-08!44|ontology_enrichment_celltype_v019_2=CL:0000540,4.38e-14,33;CL:0000047,4.38e-14,33;CL:0000031,4.38e-14,33;CL:0000404,4.38e-14,33;CL:0000117,1.97e-10,23;CL:0000337,1.97e-10,23;CL:0000393,2.19e-10,39;CL:0000211,2.19e-10,39;CL:0002319,3.49e-08,43;CL:0000221,4.04e-08,44;CL:0000133,4.04e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.05e-17!73;UBERON:0005743!7.05e-17!73;UBERON:0000073!3.13e-16!75;UBERON:0001016!3.13e-16!75;UBERON:0004121!2.51e-13!102;UBERON:0000924!2.51e-13!102;UBERON:0006601!2.51e-13!102;UBERON:0001049!2.11e-12!52;UBERON:0005068!2.11e-12!52;UBERON:0006241!2.11e-12!52;UBERON:0007135!2.11e-12!52;UBERON:0000955!3.31e-12!50;UBERON:0006238!3.31e-12!50;UBERON:0000153!3.67e-12!94;UBERON:0002020!4.38e-12!34;UBERON:0002616!8.94e-12!49;UBERON:0002346!1.58e-11!71;UBERON:0003075!1.58e-11!71;UBERON:0007284!1.58e-11!71;UBERON:0000033!6.39e-11!63;UBERON:0003080!6.97e-11!40;UBERON:0003056!7.52e-11!49;UBERON:0007811!1.63e-10!86;UBERON:0002791!2.00e-10!29;UBERON:0003528!2.00e-10!29;UBERON:0001893!2.00e-10!29;UBERON:0002780!2.39e-10!39;UBERON:0001890!2.39e-10!39;UBERON:0006240!2.39e-10!39;UBERON:0000956!2.48e-07!21;UBERON:0001869!2.48e-07!21;UBERON:0000203!2.48e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.70e-17,73;UBERON:0001016,9.28e-17,75;UBERON:0004121,2.47e-15,95;UBERON:0000924,2.47e-15,95;UBERON:0006601,2.47e-15,95;UBERON:0010371,5.94e-14,73;UBERON:0000073,7.57e-14,54;UBERON:0002346,8.51e-14,64;UBERON:0003075,8.51e-14,64;UBERON:0007284,8.51e-14,64;UBERON:0001049,1.00e-12,52;UBERON:0005068,1.00e-12,52;UBERON:0006241,1.00e-12,52;UBERON:0007135,1.00e-12,52;UBERON:0002020,3.86e-12,34;UBERON:0000955,4.49e-11,47;UBERON:0006238,4.49e-11,47;UBERON:0003080,6.20e-11,40;UBERON:0003056,6.54e-11,49;UBERON:0002616,1.21e-10,46;UBERON:0003528,1.99e-10,29;UBERON:0002791,1.99e-10,29;UBERON:0001893,1.99e-10,29;UBERON:0002780,2.19e-10,39;UBERON:0001890,2.19e-10,39;UBERON:0006240,2.19e-10,39;UBERON:0010314,2.25e-08,92;UBERON:0000956,3.00e-07,21;UBERON:0001869,3.00e-07,21;UBERON:0000203,3.00e-07,21|phase1_expression=2.08193501236232,0,0.454999239389536,0,0,0.33575854382378,0.700837921786577,0.516493293766305,1.68946466582,2.57470978954193,1.19852577757853,0.717949430958028,0.684802919724823,0.699363219351979,0.333109761815663,0.809901069559304,0,1.10411757875383,1.91960207048034,1.69755860719212,1.19060606211498,1.48936426801328,0.522399578277871,0.47997726838022,0.45881856213434,0.57423196411502,0.430761996159075,0.430942465371778,0,0.252030129759931,0,0.635030673459631,1.84519436275371,0,0.577703239502549,0.498703936075477,0.204169356262369,0,0,1.0470474879476,0,1.36609096991689,0.971020706062307,0.755380907853464,0.405507724878058,1.10128051297009,0,1.74420125104357,0.878744730937887,1.36100929351998,0.419959264876088,0,1.17447824240415,2.17608642603403,1.68046899571232,1.02903774414379,1.43266719969378,1.03134418455488,3.64169629547276,5.28990979272033,5.70448263155561,1.69422266034566,0.889294796111139,0.449949858640699,0,0.7104801149461,0.599200221036809,0.768436610643109,3.31806759387129,3.91517221161903,1.47227472945967,2.28520787523043,1.32521124570968,2.44981598429908,3.45043695665651,3.67687514644008,6.60695285996332,3.06449611404451,2.61131106535614,3.56092976871523,3.84248103130121,1.04182674111352,2.79182999001381,4.50210088025344,3.20876320331301,6.18720029494702,3.41692033917847,4.28718725398191,0.681535739998656,1.66257432234928,0.869593466105033,0.860423876981386,4.0798280022465,0.539703191637817,0,2.68816132258401,0.561777680527007,0.852151612890289,0.259786004602869,0.35333957451034,1.54927761754349,0,5.09610479413291,7.11066703153331,0.649473123033642,0.253359865475099,0,1.02765491747154,3.36619248741323,1.1875371125186,1.90833859442749,1.21786191324856,0.691846491768175,0.301445281105245,1.41106448562846,1.25666591329675,0.741584903203122,1.3013942122792,1.76922110389975,0.970601099684455,0.883366073841574,0.484875253135222,1.86391761218122,1.17112318804619,2.72280718857492,0.766371165625774,3.23500836165985,1.79970819298022,1.90605340609597,3.89455662452539,4.11750542536764,4.27224797183739,3.30266208365325,2.81287003063364,3.1168206683934,2.59586020908412,1.83310854930569,0.870848794270651,2.27450482590307,1.26265113531884,1.82168620147785,0.689706313300419,1.98068342785884,0.452114453507145,2.9255694635071,2.562274405697,2.24884138943349,2.84573707812917,3.01795190105979,2.08016688184601,2.81521798662318,1.7535658594206,1.11218899690239,2.089512999133,1.85203922767149,1.990342668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| ||
|EntrezGene=11538 | |||
|HGNC= | |||
|UniProt=A2BDX0 | |||
|association_with_transcript=33bp_to_ENSMUST00000057793_5end | |||
|description=CAGE_peak_4_at_Adnp_5end | |||
|id=chr2:168032375..168032388,- | |||
|ontology_enrichment_celltype=CL:0000540!1.11e-13!33;CL:0000047!1.11e-13!33;CL:0000031!1.11e-13!33;CL:0000404!1.11e-13!33;CL:0000117!3.82e-10!23;CL:0000337!3.82e-10!23;CL:0000393!3.99e-10!39;CL:0000211!3.99e-10!39;CL:0002319!6.86e-08!43;CL:0000221!7.88e-08!44;CL:0000133!7.88e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.38e-14,33;CL:0000047,4.38e-14,33;CL:0000031,4.38e-14,33;CL:0000404,4.38e-14,33;CL:0000117,1.97e-10,23;CL:0000337,1.97e-10,23;CL:0000393,2.19e-10,39;CL:0000211,2.19e-10,39;CL:0002319,3.49e-08,43;CL:0000221,4.04e-08,44;CL:0000133,4.04e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.05e-17!73;UBERON:0005743!7.05e-17!73;UBERON:0000073!3.13e-16!75;UBERON:0001016!3.13e-16!75;UBERON:0004121!2.51e-13!102;UBERON:0000924!2.51e-13!102;UBERON:0006601!2.51e-13!102;UBERON:0001049!2.11e-12!52;UBERON:0005068!2.11e-12!52;UBERON:0006241!2.11e-12!52;UBERON:0007135!2.11e-12!52;UBERON:0000955!3.31e-12!50;UBERON:0006238!3.31e-12!50;UBERON:0000153!3.67e-12!94;UBERON:0002020!4.38e-12!34;UBERON:0002616!8.94e-12!49;UBERON:0002346!1.58e-11!71;UBERON:0003075!1.58e-11!71;UBERON:0007284!1.58e-11!71;UBERON:0000033!6.39e-11!63;UBERON:0003080!6.97e-11!40;UBERON:0003056!7.52e-11!49;UBERON:0007811!1.63e-10!86;UBERON:0002791!2.00e-10!29;UBERON:0003528!2.00e-10!29;UBERON:0001893!2.00e-10!29;UBERON:0002780!2.39e-10!39;UBERON:0001890!2.39e-10!39;UBERON:0006240!2.39e-10!39;UBERON:0000956!2.48e-07!21;UBERON:0001869!2.48e-07!21;UBERON:0000203!2.48e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.70e-17,73;UBERON:0001016,9.28e-17,75;UBERON:0004121,2.47e-15,95;UBERON:0000924,2.47e-15,95;UBERON:0006601,2.47e-15,95;UBERON:0010371,5.94e-14,73;UBERON:0000073,7.57e-14,54;UBERON:0002346,8.51e-14,64;UBERON:0003075,8.51e-14,64;UBERON:0007284,8.51e-14,64;UBERON:0001049,1.00e-12,52;UBERON:0005068,1.00e-12,52;UBERON:0006241,1.00e-12,52;UBERON:0007135,1.00e-12,52;UBERON:0002020,3.86e-12,34;UBERON:0000955,4.49e-11,47;UBERON:0006238,4.49e-11,47;UBERON:0003080,6.20e-11,40;UBERON:0003056,6.54e-11,49;UBERON:0002616,1.21e-10,46;UBERON:0003528,1.99e-10,29;UBERON:0002791,1.99e-10,29;UBERON:0001893,1.99e-10,29;UBERON:0002780,2.19e-10,39;UBERON:0001890,2.19e-10,39;UBERON:0006240,2.19e-10,39;UBERON:0010314,2.25e-08,92;UBERON:0000956,3.00e-07,21;UBERON:0001869,3.00e-07,21;UBERON:0000203,3.00e-07,21 | |||
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| |||
|short_description=p4@Adnp | |||
}} |
Revision as of 23:01, 13 September 2013
Short description: | p4@Adnp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Adnp_5end |
Coexpression cluster: | NA |
Association with transcript: | 33bp_to_ENSMUST00000057793_5end |
EntrezGene: | Adnp |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.38e-14 | 33 |
neuronal stem cell | 4.38e-14 | 33 |
neuroblast | 4.38e-14 | 33 |
electrically signaling cell | 4.38e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.97e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.97e-10 | 23 |
electrically responsive cell | 2.19e-10 | 39 |
electrically active cell | 2.19e-10 | 39 |
neural cell | 3.49e-08 | 43 |
ectodermal cell | 4.04e-08 | 44 |
neurectodermal cell | 4.04e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.70e-17 | 73 |
nervous system | 9.28e-17 | 75 |
ectoderm-derived structure | 2.47e-15 | 95 |
ectoderm | 2.47e-15 | 95 |
presumptive ectoderm | 2.47e-15 | 95 |
ecto-epithelium | 5.94e-14 | 73 |
regional part of nervous system | 7.57e-14 | 54 |
neurectoderm | 8.51e-14 | 64 |
neural plate | 8.51e-14 | 64 |
presumptive neural plate | 8.51e-14 | 64 |
neural tube | 1.00e-12 | 52 |
neural rod | 1.00e-12 | 52 |
future spinal cord | 1.00e-12 | 52 |
neural keel | 1.00e-12 | 52 |
gray matter | 3.86e-12 | 34 |
brain | 4.49e-11 | 47 |
future brain | 4.49e-11 | 47 |
anterior neural tube | 6.20e-11 | 40 |
pre-chordal neural plate | 6.54e-11 | 49 |
regional part of brain | 1.21e-10 | 46 |
brain grey matter | 1.99e-10 | 29 |
regional part of telencephalon | 1.99e-10 | 29 |
telencephalon | 1.99e-10 | 29 |
regional part of forebrain | 2.19e-10 | 39 |
forebrain | 2.19e-10 | 39 |
future forebrain | 2.19e-10 | 39 |
structure with developmental contribution from neural crest | 2.25e-08 | 92 |
cerebral cortex | 3.00e-07 | 21 |
cerebral hemisphere | 3.00e-07 | 21 |
pallium | 3.00e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.