FFCP PHASE1:Mm9::chr7:6683274..6683357,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=57775|HGNC=|MCL_coexpression_id=483|UniProt=Q8CAH4,Q9ES63|association_with_transcript=-94bp_to_NM_021323,uc009fby.1,uc009fbz.1,uc009fca.1,uc009fcb.1_5end|description=CAGE_peak_1_at_Usp29_5end|id=chr7:6683274..6683357,+|ontology_enrichment_celltype=CL:0000117!4.31e-11!23;CL:0000337!4.31e-11!23;CL:0000540!1.75e-09!33;CL:0000047!1.75e-09!33;CL:0000031!1.75e-09!33;CL:0000404!1.75e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.14e-11,23;CL:0000337,1.14e-11,23;CL:0000540,5.82e-10,33;CL:0000047,5.82e-10,33;CL:0000031,5.82e-10,33;CL:0000404,5.82e-10,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.50e-21!73;UBERON:0005743!5.50e-21!73;UBERON:0001049!8.09e-21!52;UBERON:0005068!8.09e-21!52;UBERON:0006241!8.09e-21!52;UBERON:0007135!8.09e-21!52;UBERON:0000955!1.43e-20!50;UBERON:0006238!1.43e-20!50;UBERON:0002346!2.00e-20!71;UBERON:0003075!2.00e-20!71;UBERON:0007284!2.00e-20!71;UBERON:0000073!3.87e-20!75;UBERON:0001016!3.87e-20!75;UBERON:0002616!6.49e-20!49;UBERON:0000033!2.54e-19!63;UBERON:0004121!1.92e-18!102;UBERON:0000924!1.92e-18!102;UBERON:0006601!1.92e-18!102;UBERON:0003056!5.55e-18!49;UBERON:0003080!2.90e-17!40;UBERON:0002780!1.52e-16!39;UBERON:0001890!1.52e-16!39;UBERON:0006240!1.52e-16!39;UBERON:0002020!8.33e-14!34;UBERON:0002791!1.06e-11!29;UBERON:0003528!1.06e-11!29;UBERON:0001893!1.06e-11!29;UBERON:0000468!5.95e-10!333;UBERON:0000025!4.25e-08!114;UBERON:0000153!5.11e-08!94;UBERON:0007811!1.04e-07!86;UBERON:0000922!3.90e-07!328;UBERON:0000956!4.05e-07!21;UBERON:0001869!4.05e-07!21;UBERON:0000203!4.05e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.60e-24,54;UBERON:0002346,4.94e-23,64;UBERON:0003075,4.94e-23,64;UBERON:0007284,4.94e-23,64;UBERON:0001017,2.32e-22,73;UBERON:0001049,3.20e-22,52;UBERON:0005068,3.20e-22,52;UBERON:0006241,3.20e-22,52;UBERON:0007135,3.20e-22,52;UBERON:0001016,7.48e-21,75;UBERON:0000955,8.23e-20,47;UBERON:0006238,8.23e-20,47;UBERON:0003056,2.76e-19,49;UBERON:0002616,3.96e-19,46;UBERON:0010371,8.77e-19,73;UBERON:0003080,1.52e-18,40;UBERON:0004121,1.62e-18,95;UBERON:0000924,1.62e-18,95;UBERON:0006601,1.62e-18,95;UBERON:0010314,6.29e-18,92;UBERON:0002780,8.88e-18,39;UBERON:0001890,8.88e-18,39;UBERON:0006240,8.88e-18,39;UBERON:0002020,7.34e-15,34;UBERON:0003528,1.27e-12,29;UBERON:0002791,1.27e-12,29;UBERON:0001893,1.27e-12,29;UBERON:0000025,7.82e-08,114;UBERON:0000956,1.00e-07,21;UBERON:0001869,1.00e-07,21;UBERON:0000203,1.00e-07,21;UBERON:0002021,9.45e-07,10;UBERON:0000411,9.45e-07,10;UBERON:0001950,9.45e-07,10|phase1_expression=1.44133962394315,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.69790044012167,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0.218025156380447,0,0,0,1.43752564364972,0,0,0,0,0.573066879877513,0,10.9250888864183,10.0508286061686,10.775133859605,0.677689064138264,0,0,0,0,0,0.384218305321555,7.98410014775278,5.8052553482627,6.30974884054146,7.9982275633065,7.95126747425809,9.0643191419066,7.95517409451362,8.27296907949019,14.3150645299205,25.6651549551227,30.7213066512487,12.3973110466382,19.6698433745181,21.8783615633839,16.7509799400829,28.138130501584,24.90611438762,11.490514833473,24.4879290974457,13.9799584368975,0.227178579999552,0.831287161174641,0.869593466105033,0,0,0,0,0,1.26399978118577,0,0,0,1.26759077799012,0,0,0,0,0,0,0.34255163915718,0,0.742210695324124,3.64319186208885,3.04465478312141,2.99800146432876,2.41156224884196,4.8211369925639,0.376999773989026,14.8316980640624,0,0,5.66183974815932,0.883366073841574,1.45462575940567,0,13.7606974595427,12.9856958224342,0,0,0,0,29.2091746839404,17.8425235099264,14.5759048450923,19.9897968221118,15.0872119824895,25.973505569945,25.9586020908412,4.78645010096487,0.248813941220186,0,2.73574412652416,4.16385417480652,4.36813998423599,5.94205028357652,8.89158425230719,8.36848939561333,7.55870949680614,5.90320864726292,3.62184719034622,3.66465587985832,6.61871280587367,3.34307135911503,5.2606975782618,4.17070873838397,5.57203466435466,4.11564272815887,6.76716507182877,0,0,0,7.87077935634907,7.27030785941398,8.4629168886677,6.39210786080068,5.50939848892731,4.9365476123961,6.0458825635106,4.56064782379353,3.61972561338225,4.11399624783701,1.31333971263276,1.13496333364198,0.292399974850665,1.3173006917463,0.134206418760372,11.7762371195911,16.3618333683062,0,0,5.97207101498655,4.87697010906921,3.47942145569652,2.01683524623343,2.44615848229357,1.14135375667535,0,0.988193728344065,0.251335208800269,0.198956472041151,0.779856348476481,0,0.216138049874694,0.398282546508734,3.22435431620239,4.22719496655997,3.38123207019241,2.64746726198909,1.55161989734101,3.36651935473529,1.07502113111237,0.147610147979602,0.627994911365499,0.616985819609003,0,3.33690211432188,1.57247196090562,1.57403478669398,2.84004169943904,0.72353147925725,1.52775511068852,2.30156909960649,8.91743747262695,1.92192989231657,4.31304619582064,1.48856379067401,1.24815069245824,0.252578877947112,0.35879482704382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| ||
|EntrezGene=57775 | |||
|HGNC= | |||
|MCL_coexpression_id=483 | |||
|UniProt=Q8CAH4,Q9ES63 | |||
|association_with_transcript=-94bp_to_NM_021323,uc009fby.1,uc009fbz.1,uc009fca.1,uc009fcb.1_5end | |||
|description=CAGE_peak_1_at_Usp29_5end | |||
|id=chr7:6683274..6683357,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.31e-11!23;CL:0000337!4.31e-11!23;CL:0000540!1.75e-09!33;CL:0000047!1.75e-09!33;CL:0000031!1.75e-09!33;CL:0000404!1.75e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.14e-11,23;CL:0000337,1.14e-11,23;CL:0000540,5.82e-10,33;CL:0000047,5.82e-10,33;CL:0000031,5.82e-10,33;CL:0000404,5.82e-10,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.50e-21!73;UBERON:0005743!5.50e-21!73;UBERON:0001049!8.09e-21!52;UBERON:0005068!8.09e-21!52;UBERON:0006241!8.09e-21!52;UBERON:0007135!8.09e-21!52;UBERON:0000955!1.43e-20!50;UBERON:0006238!1.43e-20!50;UBERON:0002346!2.00e-20!71;UBERON:0003075!2.00e-20!71;UBERON:0007284!2.00e-20!71;UBERON:0000073!3.87e-20!75;UBERON:0001016!3.87e-20!75;UBERON:0002616!6.49e-20!49;UBERON:0000033!2.54e-19!63;UBERON:0004121!1.92e-18!102;UBERON:0000924!1.92e-18!102;UBERON:0006601!1.92e-18!102;UBERON:0003056!5.55e-18!49;UBERON:0003080!2.90e-17!40;UBERON:0002780!1.52e-16!39;UBERON:0001890!1.52e-16!39;UBERON:0006240!1.52e-16!39;UBERON:0002020!8.33e-14!34;UBERON:0002791!1.06e-11!29;UBERON:0003528!1.06e-11!29;UBERON:0001893!1.06e-11!29;UBERON:0000468!5.95e-10!333;UBERON:0000025!4.25e-08!114;UBERON:0000153!5.11e-08!94;UBERON:0007811!1.04e-07!86;UBERON:0000922!3.90e-07!328;UBERON:0000956!4.05e-07!21;UBERON:0001869!4.05e-07!21;UBERON:0000203!4.05e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.60e-24,54;UBERON:0002346,4.94e-23,64;UBERON:0003075,4.94e-23,64;UBERON:0007284,4.94e-23,64;UBERON:0001017,2.32e-22,73;UBERON:0001049,3.20e-22,52;UBERON:0005068,3.20e-22,52;UBERON:0006241,3.20e-22,52;UBERON:0007135,3.20e-22,52;UBERON:0001016,7.48e-21,75;UBERON:0000955,8.23e-20,47;UBERON:0006238,8.23e-20,47;UBERON:0003056,2.76e-19,49;UBERON:0002616,3.96e-19,46;UBERON:0010371,8.77e-19,73;UBERON:0003080,1.52e-18,40;UBERON:0004121,1.62e-18,95;UBERON:0000924,1.62e-18,95;UBERON:0006601,1.62e-18,95;UBERON:0010314,6.29e-18,92;UBERON:0002780,8.88e-18,39;UBERON:0001890,8.88e-18,39;UBERON:0006240,8.88e-18,39;UBERON:0002020,7.34e-15,34;UBERON:0003528,1.27e-12,29;UBERON:0002791,1.27e-12,29;UBERON:0001893,1.27e-12,29;UBERON:0000025,7.82e-08,114;UBERON:0000956,1.00e-07,21;UBERON:0001869,1.00e-07,21;UBERON:0000203,1.00e-07,21;UBERON:0002021,9.45e-07,10;UBERON:0000411,9.45e-07,10;UBERON:0001950,9.45e-07,10 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.69790044012167,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0.218025156380447,0,0,0,1.43752564364972,0,0,0,0,0.573066879877513,0,10.9250888864183,10.0508286061686,10.775133859605,0.677689064138264,0,0,0,0,0,0.384218305321555,7.98410014775278,5.8052553482627,6.30974884054146,7.9982275633065,7.95126747425809,9.0643191419066,7.95517409451362,8.27296907949019,14.3150645299205,25.6651549551227,30.7213066512487,12.3973110466382,19.6698433745181,21.8783615633839,16.7509799400829,28.138130501584,24.90611438762,11.490514833473,24.4879290974457,13.9799584368975,0.227178579999552,0.831287161174641,0.869593466105033,0,0,0,0,0,1.26399978118577,0,0,0,1.26759077799012,0,0,0,0,0,0,0.34255163915718,0,0.742210695324124,3.64319186208885,3.04465478312141,2.99800146432876,2.41156224884196,4.8211369925639,0.376999773989026,14.8316980640624,0,0,5.66183974815932,0.883366073841574,1.45462575940567,0,13.7606974595427,12.9856958224342,0,0,0,0,29.2091746839404,17.8425235099264,14.5759048450923,19.9897968221118,15.0872119824895,25.973505569945,25.9586020908412,4.78645010096487,0.248813941220186,0,2.73574412652416,4.16385417480652,4.36813998423599,5.94205028357652,8.89158425230719,8.36848939561333,7.55870949680614,5.90320864726292,3.62184719034622,3.66465587985832,6.61871280587367,3.34307135911503,5.2606975782618,4.17070873838397,5.57203466435466,4.11564272815887,6.76716507182877,0,0,0,7.87077935634907,7.27030785941398,8.4629168886677,6.39210786080068,5.50939848892731,4.9365476123961,6.0458825635106,4.56064782379353,3.61972561338225,4.11399624783701,1.31333971263276,1.13496333364198,0.292399974850665,1.3173006917463,0.134206418760372,11.7762371195911,16.3618333683062,0,0,5.97207101498655,4.87697010906921,3.47942145569652,2.01683524623343,2.44615848229357,1.14135375667535,0,0.988193728344065,0.251335208800269,0.198956472041151,0.779856348476481,0,0.216138049874694,0.398282546508734,3.22435431620239,4.22719496655997,3.38123207019241,2.64746726198909,1.55161989734101,3.36651935473529,1.07502113111237,0.147610147979602,0.627994911365499,0.616985819609003,0,3.33690211432188,1.57247196090562,1.57403478669398,2.84004169943904,0.72353147925725,1.52775511068852,2.30156909960649,8.91743747262695,1.92192989231657,4.31304619582064,1.48856379067401,1.24815069245824,0.252578877947112,0.358794827043824,0,0,4.54779388249163,5.21487924614483,3.05541154395339,3.52035372432753,4.02015017860358,1.42826184531608,1.17080188714679,2.36452716159286,1.10732344824387,0.956728611944923,0.655453258862952,0.518054945597687,0.144649058581512,0,0,0.491764273019036,0.275936746304732,19.5871719785106,22.7390671988874,0.655739781506702,2.27223834483936,1.89304931649754,3.90438744296638,4.95473814785438,1.91175038362042,1.78238939265915,4.81230102341015,3.23848561339915,2.92255857911312,2.76701444562566,17.3513510867776,0.141940085208269,3.20518086601059,4.39794790254655,0,1.32745138339963,6.79785781233948,6.95344181018927,4.90373207365335,1.77181135728464,7.37844355065426,4.39328098385976,5.08947221268508,6.41695281092498,1.26414703174326,1.05418608574999,1.03135543248187,14.6389030474129,10.9837267359099,7.89087971074802,14.5749183821483,15.4286003268778,10.167022603318,13.4930196893739,7.61162372786498,6.8054795338476,32.8339709838921,0.220528398054962,0,6.45857706783622,3.43783672090488,0.835606408021955,0.820704498725306,0,15.7611506708933,0,1.44470807574256,0.370389054739423,0.188368457004691,0,0,0,0,0,0,6.64305586520384,7.1161813494397,2.91614420218863,2.92723614420256,1.31017538247707,2.02296519577231,1.57041565878138,0.523511883968059,0,0,0,5.08356256549528,3.64008679005615,3.50012139019286,1.93739735216597,3.04121025883401,4.3422178298929,1.17183946359555,0.629156066554265,0.241584120826006,0.864090018773596,0,1.82452693761148,1.74608627180206,0.649604114888975,0.179026695667481,0.596044064343795,0.120195449519969,0.147689527174577,0,0,0.100826185136841,0,0,0,0.226730383615211,2.88581739386284,0.717710852875806,3.69346156000973,0.965947970160952,0.187682475451182,0,0,0,13.5540442228096,9.66682996665071,17.7597609166213,15.1230800462445,8.22099023724771,21.9064230243013,12.1504050041725,16.2115633160719,16.3131267234314,17.0860902878101,9.75601067291261,5.1873233542134,6.82934423016537,9.48116196566347,9.85181864351517,7.72142735490059,8.44537565646138,9.27157757575024,8.02298023979538,7.58091635291392,9.63221339582911,11.1289541417785,11.7988299412052,13.1251562429982,12.9804159839686,15.7176918123414,11.9360855723201,9.64546102318525,8.24171801606613,11.6287146906174,8.9146005620208,10.6485483695602,9.0605752179982,9.59286349773368,10.822578747763,9.7306799075428,8.41468675214754,12.6273461490165,9.91370031074791,8.41713407486608,9.37216643180976,8.56988996667402,13.0953933814301,9.76102099471586,8.68079749415136,6.74488560432454,6.31615342802603,7.30561583764214,7.65153328275374,4.19123696327079,3.01428186306548 | |||
|short_description=p1@Usp29 | |||
}} |
Revision as of 14:00, 14 September 2013
Short description: | p1@Usp29 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Usp29_5end |
Coexpression cluster: | MCL_coexpression_mm9:483 |
Association with transcript: | -94bp_to_NM_021323, uc009fby.1, uc009fbz.1, uc009fca.1, uc009fcb.1_5end |
EntrezGene: | Usp29 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.14e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.14e-11 | 23 |
neuron | 5.82e-10 | 33 |
neuronal stem cell | 5.82e-10 | 33 |
neuroblast | 5.82e-10 | 33 |
electrically signaling cell | 5.82e-10 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 9.60e-24 | 54 |
neurectoderm | 4.94e-23 | 64 |
neural plate | 4.94e-23 | 64 |
presumptive neural plate | 4.94e-23 | 64 |
central nervous system | 2.32e-22 | 73 |
neural tube | 3.20e-22 | 52 |
neural rod | 3.20e-22 | 52 |
future spinal cord | 3.20e-22 | 52 |
neural keel | 3.20e-22 | 52 |
nervous system | 7.48e-21 | 75 |
brain | 8.23e-20 | 47 |
future brain | 8.23e-20 | 47 |
pre-chordal neural plate | 2.76e-19 | 49 |
regional part of brain | 3.96e-19 | 46 |
ecto-epithelium | 8.77e-19 | 73 |
anterior neural tube | 1.52e-18 | 40 |
ectoderm-derived structure | 1.62e-18 | 95 |
ectoderm | 1.62e-18 | 95 |
presumptive ectoderm | 1.62e-18 | 95 |
structure with developmental contribution from neural crest | 6.29e-18 | 92 |
regional part of forebrain | 8.88e-18 | 39 |
forebrain | 8.88e-18 | 39 |
future forebrain | 8.88e-18 | 39 |
gray matter | 7.34e-15 | 34 |
brain grey matter | 1.27e-12 | 29 |
regional part of telencephalon | 1.27e-12 | 29 |
telencephalon | 1.27e-12 | 29 |
tube | 7.82e-08 | 114 |
cerebral cortex | 1.00e-07 | 21 |
cerebral hemisphere | 1.00e-07 | 21 |
pallium | 1.00e-07 | 21 |
occipital lobe | 9.45e-07 | 10 |
visual cortex | 9.45e-07 | 10 |
neocortex | 9.45e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.