FFCP PHASE1:Hg19::chr13:76363003..76363015,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4008|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6646|TSSclassifier=S|UniProt=E9PLU6|association_with_transcript=29bp_to_ENST00000497947_5end|coexpression_cluster_id=C1190|description=CAGE_peak_28_at_LMO7_5end|id=chr13:76363003..76363015,+|ontology_enrichment_celltype=CL:0000188!3.48e-09!9|ontology_enrichment_celltype_v019=CL:0000188;1.52e-10;9!CL:0000680;1.01e-07;7!CL:0000228;6.68e-07;1!CL:0002372;6.68e-07;1|ontology_enrichment_celltype_v019_2=CL:0000188,1.72e-10,9;CL:0000228,6.49e-07,1;CL:0002372,6.49e-07,1|ontology_enrichment_development_v019=UBERON:0008947;2.76e-18;29!UBERON:0010227;6.68e-07;1!UBERON:0004874;6.68e-07;1|ontology_enrichment_disease=DOID:305!5.12e-08!106;DOID:0050687!1.32e-07!143|ontology_enrichment_disease_v019=DOID:3111;6.68e-07;1!DOID:3603;6.68e-07;1|ontology_enrichment_disease_v019_2=DOID:3111,9.73e-07,1;DOID:3603,9.73e-07,1|ontology_enrichment_uberon=UBERON:0001737!1.72e-17!9;UBERON:0001557!1.31e-12!19;UBERON:0003104!2.35e-09!238;UBERON:0009142!2.35e-09!238;UBERON:0008947!1.65e-08!38;UBERON:0003258!1.65e-08!38;UBERON:0000065!1.71e-08!53;UBERON:0000077!8.40e-08!130;UBERON:0001004!6.24e-07!72|ontology_enrichment_uberon_v019=UBERON:0001737;3.52e-51;9!UBERON:0001557;3.52e-51;9!UBERON:0000072;1.06e-12;37!UBERON:0001134;1.59e-12;16!UBERON:0002036;1.59e-12;16!UBERON:0002081;3.83e-12;2!UBERON:0000065;2.31e-10;44!UBERON:0001723;8.90e-09;3!UBERON:0001033;8.90e-09;3!UBERON:0003978;2.19e-08;3!UBERON:0004151;2.19e-08;3!UBERON:0000946;2.19e-08;3!UBERON:0007029;2.83e-07;1!UBERON:0002079;6.68e-07;1!UBERON:0000989;6.68e-07;1!UBERON:0002146;6.68e-07;1!UBERON:0002134;6.68e-07;1!UBERON:0008811;6.68e-07;1!UBERON:0005208;6.68e-07;1!UBERON:0005623;6.68e-07;1!UBERON:0004145;6.68e-07;1!UBERON:0005946;6.68e-07;1!UBERON:0005965;6.68e-07;1!UBERON:0002078;6.68e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.73e-51,9;UBERON:0001557,2.42e-35,19;UBERON:0000072,1.72e-15,47;UBERON:0008947,1.67e-13,38;UBERON:0003258,1.67e-13,38;UBERON:0000065,3.55e-13,54;UBERON:0002081,2.88e-12,2;UBERON:0010227,2.88e-12,2;UBERON:0001004,5.48e-09,74;UBERON:0001723,6.40e-09,3;UBERON:0001033,6.40e-09,3;UBERON:0010056,6.40e-09,3;UBERON:0004151,1.81e-08,3;UBERON:0003978,1.96e-08,3;UBERON:0009751,1.96e-08,3;UBERON:0000946,1.96e-08,3;UBERON:0002523,1.96e-08,3;UBERON:0005983,1.96e-08,3;UBERON:0002165,1.96e-08,3;UBERON:0002062,1.96e-08,3;UBERON:0007280,1.96e-08,3;UBERON:0007029,2.10e-07,1;UBERON:0001041,2.63e-07,87;UBERON:0000989,5.14e-07,1;UBERON:0008811,5.14e-07,1;UBERON:0006258,5.14e-07,1;UBERON:0005876,5.14e-07,1;UBERON:0004874,5.14e-07,1;UBERON:0002134,5.45e-07,1;UBERON:0005208,5.45e-07,1;UBERON:0005946,5.45e-07,1;UBERON:0005965,5.45e-07,1;UBERON:0002078,5.45e-07,1;UBERON:0002079,6.12e-07,1;UBERON:0002146,6.88e-07,1;UBERON:0005623,6.88e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0,0,0,0.505008341862199,0,0.554128230968366,0,0,0.300476117813194,0,0,0,0.211931901159562,0,0.721367704669072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60274960087657,2.69735504124963,2.41011029883482,2.53676137284506,1.74303555273925,2.84724742933316,3.10112008768378,1.37355025587742,2.69323009862473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.723906533337896,0,1.43248770591916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0.164254312027618,1.55776328755086,0,0,0,0.184161977871793,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0.457847324091717,0.742585499285292,0,0.650060246036521,0,2.51343867559517,0,0.15350367472613,0.964856007391714,0.107420244868274,0,1.27839941124151,9.08126763596721,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0.744316738719335,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545999645631943,0.565621727814851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.435753854075961,0,0,0.455768223388005,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0,0.17472666824203,0,0.19351266257817,0.730893170861856,0.903270027585302,0.0969890164884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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4008 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |||
|TSSclassifier=S | |||
|UniProt=E9PLU6 | |||
|association_with_transcript=29bp_to_ENST00000497947_5end | |||
|coexpression_cluster_id=C1190 | |||
|description=CAGE_peak_28_at_LMO7_5end | |||
|id=chr13:76363003..76363015,+ | |||
|ontology_enrichment_celltype=CL:0000188!3.48e-09!9 | |||
|ontology_enrichment_celltype_v019=CL:0000188;1.52e-10;9!CL:0000680;1.01e-07;7!CL:0000228;6.68e-07;1!CL:0002372;6.68e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.72e-10,9;CL:0000228,6.49e-07,1;CL:0002372,6.49e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.76e-18;29!UBERON:0010227;6.68e-07;1!UBERON:0004874;6.68e-07;1 | |||
|ontology_enrichment_disease=DOID:305!5.12e-08!106;DOID:0050687!1.32e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:3111;6.68e-07;1!DOID:3603;6.68e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,9.73e-07,1;DOID:3603,9.73e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.72e-17!9;UBERON:0001557!1.31e-12!19;UBERON:0003104!2.35e-09!238;UBERON:0009142!2.35e-09!238;UBERON:0008947!1.65e-08!38;UBERON:0003258!1.65e-08!38;UBERON:0000065!1.71e-08!53;UBERON:0000077!8.40e-08!130;UBERON:0001004!6.24e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.52e-51;9!UBERON:0001557;3.52e-51;9!UBERON:0000072;1.06e-12;37!UBERON:0001134;1.59e-12;16!UBERON:0002036;1.59e-12;16!UBERON:0002081;3.83e-12;2!UBERON:0000065;2.31e-10;44!UBERON:0001723;8.90e-09;3!UBERON:0001033;8.90e-09;3!UBERON:0003978;2.19e-08;3!UBERON:0004151;2.19e-08;3!UBERON:0000946;2.19e-08;3!UBERON:0007029;2.83e-07;1!UBERON:0002079;6.68e-07;1!UBERON:0000989;6.68e-07;1!UBERON:0002146;6.68e-07;1!UBERON:0002134;6.68e-07;1!UBERON:0008811;6.68e-07;1!UBERON:0005208;6.68e-07;1!UBERON:0005623;6.68e-07;1!UBERON:0004145;6.68e-07;1!UBERON:0005946;6.68e-07;1!UBERON:0005965;6.68e-07;1!UBERON:0002078;6.68e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.73e-51,9;UBERON:0001557,2.42e-35,19;UBERON:0000072,1.72e-15,47;UBERON:0008947,1.67e-13,38;UBERON:0003258,1.67e-13,38;UBERON:0000065,3.55e-13,54;UBERON:0002081,2.88e-12,2;UBERON:0010227,2.88e-12,2;UBERON:0001004,5.48e-09,74;UBERON:0001723,6.40e-09,3;UBERON:0001033,6.40e-09,3;UBERON:0010056,6.40e-09,3;UBERON:0004151,1.81e-08,3;UBERON:0003978,1.96e-08,3;UBERON:0009751,1.96e-08,3;UBERON:0000946,1.96e-08,3;UBERON:0002523,1.96e-08,3;UBERON:0005983,1.96e-08,3;UBERON:0002165,1.96e-08,3;UBERON:0002062,1.96e-08,3;UBERON:0007280,1.96e-08,3;UBERON:0007029,2.10e-07,1;UBERON:0001041,2.63e-07,87;UBERON:0000989,5.14e-07,1;UBERON:0008811,5.14e-07,1;UBERON:0006258,5.14e-07,1;UBERON:0005876,5.14e-07,1;UBERON:0004874,5.14e-07,1;UBERON:0002134,5.45e-07,1;UBERON:0005208,5.45e-07,1;UBERON:0005946,5.45e-07,1;UBERON:0005965,5.45e-07,1;UBERON:0002078,5.45e-07,1;UBERON:0002079,6.12e-07,1;UBERON:0002146,6.88e-07,1;UBERON:0005623,6.88e-07,1 | |||
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|short_description=p28@LMO7 | |||
}} |
Revision as of 02:47, 11 September 2013
Short description: | p28@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_28_at_LMO7_5end |
Coexpression cluster: | C1190_Skeletal_rhabdomyosarcoma_mesenchymal_giant_mucinous_skeletal_Hep2 |
Association with transcript: | 29bp_to_ENST00000497947_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | E9PLU6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.72e-10 | 9 |
multinucleate cell | 6.49e-07 | 1 |
myotube | 6.49e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.73e-51 | 9 |
upper respiratory tract | 2.42e-35 | 19 |
segment of respiratory tract | 1.72e-15 | 47 |
respiratory primordium | 1.67e-13 | 38 |
endoderm of foregut | 1.67e-13 | 38 |
respiratory tract | 3.55e-13 | 54 |
cardiac atrium | 2.88e-12 | 2 |
future cardiac atrium | 2.88e-12 | 2 |
respiratory system | 5.48e-09 | 74 |
tongue | 6.40e-09 | 3 |
gustatory system | 6.40e-09 | 3 |
future tongue | 6.40e-09 | 3 |
cardiac chamber | 1.81e-08 | 3 |
valve | 1.96e-08 | 3 |
cardiac mesenchyme | 1.96e-08 | 3 |
cardial valve | 1.96e-08 | 3 |
tunica intima | 1.96e-08 | 3 |
heart layer | 1.96e-08 | 3 |
endocardium | 1.96e-08 | 3 |
endocardial cushion | 1.96e-08 | 3 |
presumptive endocardium | 1.96e-08 | 3 |
surface | 2.10e-07 | 1 |
foregut | 2.63e-07 | 87 |
penis | 5.14e-07 | 1 |
intromittent organ | 5.14e-07 | 1 |
lateral plate mesenchyme | 5.14e-07 | 1 |
undifferentiated genital tubercle | 5.14e-07 | 1 |
somatopleure | 5.14e-07 | 1 |
tricuspid valve | 5.45e-07 | 1 |
right atrium valve | 5.45e-07 | 1 |
outflow tract of atrium | 5.45e-07 | 1 |
outflow part of right atrium | 5.45e-07 | 1 |
right cardiac atrium | 5.45e-07 | 1 |
left cardiac atrium | 6.12e-07 | 1 |
pulmonary valve | 6.88e-07 | 1 |
semi-lunar valve | 6.88e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 9.73e-07 | 1 |
mucinous cystadenocarcinoma | 9.73e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.