FFCP PHASE1:Mm9::chr11:110198926..110199018,-: Difference between revisions
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{{FFCP|EntrezGene=217265|HGNC=|MCL_coexpression_id=1|UniProt=Q8K448,A2AEP5,A2AEP6|association_with_transcript=0bp_to_ENSMUST00000043961,ENSMUST00000124714,ENSMUST00000127318,ENSMUST00000134721_5end|description=CAGE_peak_1_at_Abca5_5end|id=chr11:110198926..110199018,-|ontology_enrichment_celltype=CL:0000393!8.25e-07!39;CL:0000211!8.25e-07!39|ontology_enrichment_celltype_v019_2=CL:0000393,7.84e-07,39;CL:0000211,7.84e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.94e-20!102;UBERON:0000924!1.94e-20!102;UBERON:0006601!1.94e-20!102;UBERON:0000033!3.47e-18!63;UBERON:0002346!9.77e-18!71;UBERON:0003075!9.77e-18!71;UBERON:0007284!9.77e-18!71;UBERON:0000073!8.04e-16!75;UBERON:0001016!8.04e-16!75;UBERON:0001017!8.69e-16!73;UBERON:0005743!8.69e-16!73;UBERON:0001049!2.28e-14!52;UBERON:0005068!2.28e-14!52;UBERON:0006241!2.28e-14!52;UBERON:0007135!2.28e-14!52;UBERON:0003056!4.12e-14!49;UBERON:0000955!8.98e-14!50;UBERON:0006238!8.98e-14!50;UBERON:0002616!3.50e-13!49;UBERON:0004111!2.70e-11!122;UBERON:0000468!1.67e-10!333;UBERON:0000025!4.99e-10!114;UBERON:0003080!7.06e-10!40;UBERON:0002020!1.32e-09!34;UBERON:0002780!2.32e-09!39;UBERON:0001890!2.32e-09!39;UBERON:0006240!2.32e-09!39;UBERON:0000475!4.23e-08!200;UBERON:0002791!1.94e-07!29;UBERON:0003528!1.94e-07!29;UBERON:0001893!1.94e-07!29;UBERON:0000922!2.26e-07!328;UBERON:0007811!4.95e-07!86;UBERON:0002021!7.28e-07!10;UBERON:0000411!7.28e-07!10;UBERON:0001950!7.28e-07!10;UBERON:0000153!7.54e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.12e-21,95;UBERON:0000924,3.12e-21,95;UBERON:0006601,3.12e-21,95;UBERON:0010371,1.46e-20,73;UBERON:0002346,4.29e-19,64;UBERON:0003075,4.29e-19,64;UBERON:0007284,4.29e-19,64;UBERON:0001016,1.02e-15,75;UBERON:0001017,1.11e-15,73;UBERON:0010314,1.25e-15,92;UBERON:0000073,1.45e-15,54;UBERON:0001049,2.34e-14,52;UBERON:0005068,2.34e-14,52;UBERON:0006241,2.34e-14,52;UBERON:0007135,2.34e-14,52;UBERON:0003056,4.24e-14,49;UBERON:0000955,5.54e-12,47;UBERON:0006238,5.54e-12,47;UBERON:0002616,2.05e-11,46;UBERON:0004111,3.23e-11,122;UBERON:0000025,5.97e-10,114;UBERON:0003080,7.45e-10,40;UBERON:0002020,1.41e-09,34;UBERON:0002780,2.45e-09,39;UBERON:0001890,2.45e-09,39;UBERON:0006240,2.45e-09,39;UBERON:0003528,2.09e-07,29;UBERON:0002791,2.09e-07,29;UBERON:0001893,2.09e-07,29;UBERON:0002021,6.91e-07,10;UBERON:0000411,6.91e-07,10;UBERON:0001950,6.91e-07,10|phase1_expression=23.2215828301951,0.697950815278722,0.454999239389536,0.90739263392049,0,0.503637815735669,0,0.258246646883153,0.84473233291,0.234064526321993,0,0,0,0.0874204024189974,1.33243904726265,0.809901069559304,0,1.41957974411207,1.64537320326887,1.27316895539409,17.3488311908182,0,0,0.159992422793407,0,0,0.430761996159075,0.646413698057667,0.570070258369122,0.504060259519861,0,1.27006134691926,0.61506478758457,0,0,0.166234645358492,0.204169356262369,0.418531630736908,0,0,0,0.683045484958446,0,8.81277725829041,7.09638518536602,2.38610777810186,4.69434806608824,3.05235218932625,0.659058548203415,7.77719596297134,3.77963338388479,2.87505128729943,1.00669563634642,0,0.336093799142464,14.1492689819771,17.7650732762029,10.8291139378263,9.3065571995415,6.87688273053643,7.60597684207415,3.04960078862219,1.77858959222228,0.449949858640699,0,2.1314403448383,0.898800331555214,1.15265491596466,8.60623782160365,3.91517221161903,5.46844899513593,19.9955689082663,15.2399293256613,4.65465037016825,5.46319184803947,11.9498442259303,30.8324466798288,33.1987079021488,32.5645850503236,7.78129097608144,7.68496206260241,7.29278718779464,16.7509799400829,25.3243174514256,29.1844653253707,27.6950870345248,30.467539691008,15.2847545576746,9.92013132664711,6.12129636864963,3.76823835312181,1.72084775396277,4.0798280022465,4.31762553310254,7.14754059192436,4.48026887097336,6.74133216632409,0.170430322578058,0,0,11.1266301623578,3.84979432242953,7.64415719119937,14.2213340630666,0.649473123033642,0.760079596425296,1.01104889002957,9.1347103775248,2.84831672011889,7.71899123137089,3.99016251562112,5.48037860961854,5.76538743140146,4.6724018571313,11.9940481278419,4.14699751387929,13.5957232253906,5.92857363371638,2.65383165584962,9.05894359705491,4.41683036920787,6.78825354389311,1.86391761218122,32.7914492652933,35.6059401582874,2.29911349687732,0.718890747035522,0.599902730993408,0.889491589511453,29.3589653233452,20.5875271268382,12.5654352112864,34.0695667576862,30.174423964979,23.6878370797899,23.3627418817571,15.9887801244997,8.45967400148633,20.7232661915613,12.6265113531884,21.4698730888461,23.2201125477808,25.7488845621649,26.2226383034144,32.4534100951834,28.6974733438064,22.3947121697752,20.1788629176432,2.58681591519411,5.29497024469894,8.62160508403349,6.35667624039967,6.95118123063995,10.0993128291428,9.87754254758129,5.9710280045548,0,0.257347907114715,0.568326998791185,2.48550927042602,2.57978665979206,4.50155153652537,4.26140524053378,5.90292695242211,4.78228049950873,4.18561100550734,5.09719462659276,6.77238985729583,6.253274296712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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:217265 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8K448,uniprot:A2AEP5,uniprot:A2AEP6 | |||
|association_with_transcript=0bp_to_ENSMUST00000043961,ENSMUST00000124714,ENSMUST00000127318,ENSMUST00000134721_5end | |||
|cluster_id=chr11:110198926..110199018,- | |||
|description=CAGE_peak_1_at_Abca5_5end | |||
|id=chr11:110198926..110199018,- | |||
|ontology_enrichment_celltype=CL:0000393!8.25e-07!39;CL:0000211!8.25e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,7.84e-07,39;CL:0000211,7.84e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.94e-20!102;UBERON:0000924!1.94e-20!102;UBERON:0006601!1.94e-20!102;UBERON:0000033!3.47e-18!63;UBERON:0002346!9.77e-18!71;UBERON:0003075!9.77e-18!71;UBERON:0007284!9.77e-18!71;UBERON:0000073!8.04e-16!75;UBERON:0001016!8.04e-16!75;UBERON:0001017!8.69e-16!73;UBERON:0005743!8.69e-16!73;UBERON:0001049!2.28e-14!52;UBERON:0005068!2.28e-14!52;UBERON:0006241!2.28e-14!52;UBERON:0007135!2.28e-14!52;UBERON:0003056!4.12e-14!49;UBERON:0000955!8.98e-14!50;UBERON:0006238!8.98e-14!50;UBERON:0002616!3.50e-13!49;UBERON:0004111!2.70e-11!122;UBERON:0000468!1.67e-10!333;UBERON:0000025!4.99e-10!114;UBERON:0003080!7.06e-10!40;UBERON:0002020!1.32e-09!34;UBERON:0002780!2.32e-09!39;UBERON:0001890!2.32e-09!39;UBERON:0006240!2.32e-09!39;UBERON:0000475!4.23e-08!200;UBERON:0002791!1.94e-07!29;UBERON:0003528!1.94e-07!29;UBERON:0001893!1.94e-07!29;UBERON:0000922!2.26e-07!328;UBERON:0007811!4.95e-07!86;UBERON:0002021!7.28e-07!10;UBERON:0000411!7.28e-07!10;UBERON:0001950!7.28e-07!10;UBERON:0000153!7.54e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.12e-21,95;UBERON:0000924,3.12e-21,95;UBERON:0006601,3.12e-21,95;UBERON:0010371,1.46e-20,73;UBERON:0002346,4.29e-19,64;UBERON:0003075,4.29e-19,64;UBERON:0007284,4.29e-19,64;UBERON:0001016,1.02e-15,75;UBERON:0001017,1.11e-15,73;UBERON:0010314,1.25e-15,92;UBERON:0000073,1.45e-15,54;UBERON:0001049,2.34e-14,52;UBERON:0005068,2.34e-14,52;UBERON:0006241,2.34e-14,52;UBERON:0007135,2.34e-14,52;UBERON:0003056,4.24e-14,49;UBERON:0000955,5.54e-12,47;UBERON:0006238,5.54e-12,47;UBERON:0002616,2.05e-11,46;UBERON:0004111,3.23e-11,122;UBERON:0000025,5.97e-10,114;UBERON:0003080,7.45e-10,40;UBERON:0002020,1.41e-09,34;UBERON:0002780,2.45e-09,39;UBERON:0001890,2.45e-09,39;UBERON:0006240,2.45e-09,39;UBERON:0003528,2.09e-07,29;UBERON:0002791,2.09e-07,29;UBERON:0001893,2.09e-07,29;UBERON:0002021,6.91e-07,10;UBERON:0000411,6.91e-07,10;UBERON:0001950,6.91e-07,10 | |||
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| |||
|short_description=p1@Abca5 | |||
}} |
Revision as of 09:30, 5 August 2015
Short description: | p1@Abca5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Abca5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000043961, ENSMUST00000124714, ENSMUST00000127318, ENSMUST00000134721_5end |
EntrezGene: | 217265 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 7.84e-07 | 39 |
electrically active cell | 7.84e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.12e-21 | 95 |
ectoderm | 3.12e-21 | 95 |
presumptive ectoderm | 3.12e-21 | 95 |
ecto-epithelium | 1.46e-20 | 73 |
neurectoderm | 4.29e-19 | 64 |
neural plate | 4.29e-19 | 64 |
presumptive neural plate | 4.29e-19 | 64 |
nervous system | 1.02e-15 | 75 |
central nervous system | 1.11e-15 | 73 |
structure with developmental contribution from neural crest | 1.25e-15 | 92 |
regional part of nervous system | 1.45e-15 | 54 |
neural tube | 2.34e-14 | 52 |
neural rod | 2.34e-14 | 52 |
future spinal cord | 2.34e-14 | 52 |
neural keel | 2.34e-14 | 52 |
pre-chordal neural plate | 4.24e-14 | 49 |
brain | 5.54e-12 | 47 |
future brain | 5.54e-12 | 47 |
regional part of brain | 2.05e-11 | 46 |
anatomical conduit | 3.23e-11 | 122 |
tube | 5.97e-10 | 114 |
anterior neural tube | 7.45e-10 | 40 |
gray matter | 1.41e-09 | 34 |
regional part of forebrain | 2.45e-09 | 39 |
forebrain | 2.45e-09 | 39 |
future forebrain | 2.45e-09 | 39 |
brain grey matter | 2.09e-07 | 29 |
regional part of telencephalon | 2.09e-07 | 29 |
telencephalon | 2.09e-07 | 29 |
occipital lobe | 6.91e-07 | 10 |
visual cortex | 6.91e-07 | 10 |
neocortex | 6.91e-07 | 10 |