FFCP PHASE1:Mm9::chr12:79327699..79327760,+: Difference between revisions
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{{FFCP|EntrezGene=268566|HGNC=|MCL_coexpression_id=1|UniProt=Q8BUV3,A0JNY3|association_with_transcript=57bp_to_ENSMUST00000052472,ENSMUST00000110388,NM_145965,NM_172952,uc007nzc.2,uc007nzd.2_5end|description=CAGE_peak_1_at_Gphn_5end|id=chr12:79327699..79327760,+|ontology_enrichment_celltype=CL:0000117!1.04e-08!23;CL:0000337!1.04e-08!23;CL:0000540!2.32e-08!33;CL:0000047!2.32e-08!33;CL:0000031!2.32e-08!33;CL:0000404!2.32e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-08,23;CL:0000337,1.04e-08,23;CL:0000540,2.32e-08,33;CL:0000047,2.32e-08,33;CL:0000031,2.32e-08,33;CL:0000404,2.32e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.56e-15!102;UBERON:0000924!1.56e-15!102;UBERON:0006601!1.56e-15!102;UBERON:0000033!2.91e-15!63;UBERON:0002346!3.57e-15!71;UBERON:0003075!3.57e-15!71;UBERON:0007284!3.57e-15!71;UBERON:0001017!2.16e-14!73;UBERON:0005743!2.16e-14!73;UBERON:0001049!1.50e-13!52;UBERON:0005068!1.50e-13!52;UBERON:0006241!1.50e-13!52;UBERON:0007135!1.50e-13!52;UBERON:0000073!1.85e-13!75;UBERON:0001016!1.85e-13!75;UBERON:0004111!5.51e-13!122;UBERON:0000955!1.90e-12!50;UBERON:0006238!1.90e-12!50;UBERON:0003056!3.62e-12!49;UBERON:0002020!5.09e-12!34;UBERON:0002616!7.74e-12!49;UBERON:0000025!9.34e-12!114;UBERON:0000468!1.86e-10!333;UBERON:0003080!1.12e-09!40;UBERON:0002791!2.46e-09!29;UBERON:0003528!2.46e-09!29;UBERON:0001893!2.46e-09!29;UBERON:0002780!4.20e-09!39;UBERON:0001890!4.20e-09!39;UBERON:0006240!4.20e-09!39;UBERON:0000922!2.99e-07!328;UBERON:0000479!5.11e-07!349;UBERON:0002021!7.09e-07!10;UBERON:0000411!7.09e-07!10;UBERON:0001950!7.09e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.58e-16,92;UBERON:0002346,2.82e-16,64;UBERON:0003075,2.82e-16,64;UBERON:0007284,2.82e-16,64;UBERON:0004121,3.68e-16,95;UBERON:0000924,3.68e-16,95;UBERON:0006601,3.68e-16,95;UBERON:0010371,9.99e-16,73;UBERON:0000073,1.58e-14,54;UBERON:0001017,2.06e-14,73;UBERON:0001049,1.42e-13,52;UBERON:0005068,1.42e-13,52;UBERON:0006241,1.42e-13,52;UBERON:0007135,1.42e-13,52;UBERON:0001016,1.77e-13,75;UBERON:0004111,5.31e-13,122;UBERON:0003056,3.62e-12,49;UBERON:0002020,5.08e-12,34;UBERON:0000025,9.02e-12,114;UBERON:0000955,5.79e-11,47;UBERON:0006238,5.79e-11,47;UBERON:0002616,2.23e-10,46;UBERON:0003080,1.12e-09,40;UBERON:0003528,2.46e-09,29;UBERON:0002791,2.46e-09,29;UBERON:0001893,2.46e-09,29;UBERON:0002780,4.20e-09,39;UBERON:0001890,4.20e-09,39;UBERON:0006240,4.20e-09,39;UBERON:0000479,5.44e-07,349;UBERON:0002021,7.09e-07,10;UBERON:0000411,7.09e-07,10;UBERON:0001950,7.09e-07,10|phase1_expression=12.4916100741739,0.697950815278722,0.454999239389536,5.74682001482977,4.50806156951712,5.54001597309236,6.30754129607919,1.29123323441576,0.563154888606667,0.468129052643987,1.02730780935303,0.957265907944037,0.856003649656029,0.786783621770977,0.999329285446988,3.84703008040669,2.79824751251259,2.68142840554502,1.91960207048034,1.69755860719212,26.8736796877381,1.88652807281682,3.13439746966722,4.95976510659561,3.89995777814189,0,2.15380998079537,2.58565479223067,4.18051522804023,5.04060259519861,2.21730510655305,12.7006134691926,4.92051830067656,0,7.79899373328441,7.48055904113216,12.2501613757421,6.27797446105362,3.906676722619,2.09409497589519,3.52938892818609,4.78131839470912,7.2826552954673,5.66535680890098,5.27160042341476,3.30384153891027,0,4.14247797122848,3.29529274101708,6.61061656852564,5.31948402176378,1.43752564364972,2.34895648480831,3.62681071005672,0.672187598284928,2.31533492432352,3.43840127926508,5.15672092277442,43.7003555456731,45.4932242173948,41.1990412279016,2.03306719241479,2.66788438833342,1.3498495759221,3.9554654502679,0.7104801149461,2.09720077362883,4.99483796918021,18.9751990524514,13.7706057098324,13.4607975264884,44.5615535669934,49.0328160912582,21.5583806618319,19.6483215587385,11.0306254393203,42.9451935897616,53.6286819957788,50.0757298415354,38.774568592677,45.6523341576024,45.3194632384381,44.1109138422182,45.0210088025344,47.2146585630343,45.0781735774712,78.4467961203057,58.1566270974938,6.89108359331975,7.3304413303582,51.0161500114953,13.7667820317022,2.719885334831,11.3337670243942,9.09686984426737,9.40856462904405,20.7857741794993,3.2381761289831,3.11743205523443,3.18005617059306,17.8871143116384,6.41632387071589,2.54805239706646,7.11066703153331,1.94841936910093,3.29367825117628,1.01104889002957,17.127581957859,22.2686579936568,25.6804900582147,9.71517829890361,14.6143429589828,6.45723392316964,10.5505848386836,18.5790157274414,16.5879900555172,4.44950941921873,36.005239873058,6.19227386364912,16.1766849947409,13.2504911076236,13.5765070877862,9.31958806090611,111.549483661399,120.64130312455,10.2182822083437,2.75574786363617,1.79970819298022,3.43089613097275,86.4291989365827,75.945100067892,36.9423795211821,59.9693904663354,52.1659532953874,63.1675655461063,67.8168479623227,11.4060087512354,15.5508713262616,23.7559392927654,46.5076501509107,14.5734896118228,13.5642241615749,22.687828355474,28.031096117443,30.6844611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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:268566 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8BUV3,uniprot:A0JNY3 | |||
|association_with_transcript=57bp_to_ENSMUST00000052472,ENSMUST00000110388,NM_145965,NM_172952,uc007nzc.2,uc007nzd.2_5end | |||
|cluster_id=chr12:79327699..79327760,+ | |||
|description=CAGE_peak_1_at_Gphn_5end | |||
|id=chr12:79327699..79327760,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.04e-08!23;CL:0000337!1.04e-08!23;CL:0000540!2.32e-08!33;CL:0000047!2.32e-08!33;CL:0000031!2.32e-08!33;CL:0000404!2.32e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-08,23;CL:0000337,1.04e-08,23;CL:0000540,2.32e-08,33;CL:0000047,2.32e-08,33;CL:0000031,2.32e-08,33;CL:0000404,2.32e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.56e-15!102;UBERON:0000924!1.56e-15!102;UBERON:0006601!1.56e-15!102;UBERON:0000033!2.91e-15!63;UBERON:0002346!3.57e-15!71;UBERON:0003075!3.57e-15!71;UBERON:0007284!3.57e-15!71;UBERON:0001017!2.16e-14!73;UBERON:0005743!2.16e-14!73;UBERON:0001049!1.50e-13!52;UBERON:0005068!1.50e-13!52;UBERON:0006241!1.50e-13!52;UBERON:0007135!1.50e-13!52;UBERON:0000073!1.85e-13!75;UBERON:0001016!1.85e-13!75;UBERON:0004111!5.51e-13!122;UBERON:0000955!1.90e-12!50;UBERON:0006238!1.90e-12!50;UBERON:0003056!3.62e-12!49;UBERON:0002020!5.09e-12!34;UBERON:0002616!7.74e-12!49;UBERON:0000025!9.34e-12!114;UBERON:0000468!1.86e-10!333;UBERON:0003080!1.12e-09!40;UBERON:0002791!2.46e-09!29;UBERON:0003528!2.46e-09!29;UBERON:0001893!2.46e-09!29;UBERON:0002780!4.20e-09!39;UBERON:0001890!4.20e-09!39;UBERON:0006240!4.20e-09!39;UBERON:0000922!2.99e-07!328;UBERON:0000479!5.11e-07!349;UBERON:0002021!7.09e-07!10;UBERON:0000411!7.09e-07!10;UBERON:0001950!7.09e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.58e-16,92;UBERON:0002346,2.82e-16,64;UBERON:0003075,2.82e-16,64;UBERON:0007284,2.82e-16,64;UBERON:0004121,3.68e-16,95;UBERON:0000924,3.68e-16,95;UBERON:0006601,3.68e-16,95;UBERON:0010371,9.99e-16,73;UBERON:0000073,1.58e-14,54;UBERON:0001017,2.06e-14,73;UBERON:0001049,1.42e-13,52;UBERON:0005068,1.42e-13,52;UBERON:0006241,1.42e-13,52;UBERON:0007135,1.42e-13,52;UBERON:0001016,1.77e-13,75;UBERON:0004111,5.31e-13,122;UBERON:0003056,3.62e-12,49;UBERON:0002020,5.08e-12,34;UBERON:0000025,9.02e-12,114;UBERON:0000955,5.79e-11,47;UBERON:0006238,5.79e-11,47;UBERON:0002616,2.23e-10,46;UBERON:0003080,1.12e-09,40;UBERON:0003528,2.46e-09,29;UBERON:0002791,2.46e-09,29;UBERON:0001893,2.46e-09,29;UBERON:0002780,4.20e-09,39;UBERON:0001890,4.20e-09,39;UBERON:0006240,4.20e-09,39;UBERON:0000479,5.44e-07,349;UBERON:0002021,7.09e-07,10;UBERON:0000411,7.09e-07,10;UBERON:0001950,7.09e-07,10 | |||
|phase1_expression=12.4916100741739,0.697950815278722,0.454999239389536,5.74682001482977,4.50806156951712,5.54001597309236,6.30754129607919,1.29123323441576,0.563154888606667,0.468129052643987,1.02730780935303,0.957265907944037,0.856003649656029,0.786783621770977,0.999329285446988,3.84703008040669,2.79824751251259,2.68142840554502,1.91960207048034,1.69755860719212,26.8736796877381,1.88652807281682,3.13439746966722,4.95976510659561,3.89995777814189,0,2.15380998079537,2.58565479223067,4.18051522804023,5.04060259519861,2.21730510655305,12.7006134691926,4.92051830067656,0,7.79899373328441,7.48055904113216,12.2501613757421,6.27797446105362,3.906676722619,2.09409497589519,3.52938892818609,4.78131839470912,7.2826552954673,5.66535680890098,5.27160042341476,3.30384153891027,0,4.14247797122848,3.29529274101708,6.61061656852564,5.31948402176378,1.43752564364972,2.34895648480831,3.62681071005672,0.672187598284928,2.31533492432352,3.43840127926508,5.15672092277442,43.7003555456731,45.4932242173948,41.1990412279016,2.03306719241479,2.66788438833342,1.3498495759221,3.9554654502679,0.7104801149461,2.09720077362883,4.99483796918021,18.9751990524514,13.7706057098324,13.4607975264884,44.5615535669934,49.0328160912582,21.5583806618319,19.6483215587385,11.0306254393203,42.9451935897616,53.6286819957788,50.0757298415354,38.774568592677,45.6523341576024,45.3194632384381,44.1109138422182,45.0210088025344,47.2146585630343,45.0781735774712,78.4467961203057,58.1566270974938,6.89108359331975,7.3304413303582,51.0161500114953,13.7667820317022,2.719885334831,11.3337670243942,9.09686984426737,9.40856462904405,20.7857741794993,3.2381761289831,3.11743205523443,3.18005617059306,17.8871143116384,6.41632387071589,2.54805239706646,7.11066703153331,1.94841936910093,3.29367825117628,1.01104889002957,17.127581957859,22.2686579936568,25.6804900582147,9.71517829890361,14.6143429589828,6.45723392316964,10.5505848386836,18.5790157274414,16.5879900555172,4.44950941921873,36.005239873058,6.19227386364912,16.1766849947409,13.2504911076236,13.5765070877862,9.31958806090611,111.549483661399,120.64130312455,10.2182822083437,2.75574786363617,1.79970819298022,3.43089613097275,86.4291989365827,75.945100067892,36.9423795211821,59.9693904663354,52.1659532953874,63.1675655461063,67.8168479623227,11.4060087512354,15.5508713262616,23.7559392927654,46.5076501509107,14.5734896118228,13.5642241615749,22.687828355474,28.031096117443,30.6844611172489,36.640524001467,36.3562691291748,69.8499100995342,4.74249584452253,15.695804653929,14.6039433056078,10.9597866213787,21.9657326888222,18.1091126591527,16.2567887762275,10.1507476077432,7.02213187313235,5.1469581422943,3.12579849335152,14.2916783049496,15.9477720787145,14.5850269783422,17.992599904476,20.46348010173,19.4376562238097,22.0907247512887,18.2425912951741,24.2871912123713,25.5067767365895,27.0876315730507,28.2930145315037,31.7253972712971,31.8347667172023,28.3175543584384,61.194375032161,36.531137394646,5.28670052774077,11.1069237998689,11.3042772783674,14.1664369834868,14.3042882067524,12.9077455758939,11.7860363237781,14.4571475845545,7.59246498471219,11.3642278759568,12.5667604400135,13.5290400987983,12.0877734013854,16.178749355776,10.8069024937347,18.5201384126561,5.69003702859245,12.4530878744604,12.3978509240388,13.8482902934814,19.0073437424273,17.8846340720312,30.8594301166376,31.7361818156145,31.7137430239577,22.4582838337677,12.4510103376603,7.84171996865642,7.86235980452812,7.42044970870017,6.6943840058206,6.02942899381042,8.14802725700543,8.63088412352432,9.72811360650212,9.60964946158285,12.9391385874619,15.2577788544086,19.9704110793319,18.185679212192,18.477933592757,13.9908621195376,32.3318082791558,9.66406200029472,12.385338209594,13.0703716046895,17.6017686216377,27.303519963016,25.4706695748035,19.9036320814955,34.8373668474682,29.4548037232871,29.6585869702926,29.3315333341171,23.3124725518959,23.8670946659494,0,6.52686820582452,12.7858710984949,25.9380541526449,71.9266643145308,68.0999899100701,5.57378814280696,33.5786333181816,16.7219356290616,16.3984272604588,20.6806461823487,16.010909462821,22.5026660823218,17.5507449089076,17.4068601720205,23.6727244908163,18.1832377855401,105.393391786353,23.2781739741561,7.30068975035746,13.6825045857004,26.8901300445233,15.9294166007955,9.71122544619926,9.97667737983678,13.5795657424247,6.79194353625777,14.7568871013085,14.7304127105886,17.0860852854428,18.5378636760055,20.2263525078922,20.0295356292498,13.4076206222643,43.2358299307311,14.5849486165361,6.33857550535497,11.1455258216428,23.0542303734956,12.1290795969408,17.9358432456312,8.52501857520878,4.92810586933792,4.2366414172764,24.0375953879908,21.4352128823924,19.2142667768128,17.1891836045244,11.4597450243011,11.3257220824092,17.7803310344209,80.4745810725612,6.32222258952055,8.46186158649212,9.81530995059472,7.91147519419702,5.19438065339896,5.26189798375002,2.54967644990783,3.35883485576779,2.62579950228405,7.63736494412091,10.1227517945963,18.7053909756701,15.0127423742304,16.0997987931141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| |||
|short_description=p1@Gphn | |||
}} |
Revision as of 06:55, 5 August 2015
Short description: | p1@Gphn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gphn_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 57bp_to_ENSMUST00000052472, ENSMUST00000110388, NM_145965, NM_172952, uc007nzc.2, uc007nzd.2_5end |
EntrezGene: | 268566 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.04e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-08 | 23 |
neuron | 2.32e-08 | 33 |
neuronal stem cell | 2.32e-08 | 33 |
neuroblast | 2.32e-08 | 33 |
electrically signaling cell | 2.32e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.58e-16 | 92 |
neurectoderm | 2.82e-16 | 64 |
neural plate | 2.82e-16 | 64 |
presumptive neural plate | 2.82e-16 | 64 |
ectoderm-derived structure | 3.68e-16 | 95 |
ectoderm | 3.68e-16 | 95 |
presumptive ectoderm | 3.68e-16 | 95 |
ecto-epithelium | 9.99e-16 | 73 |
regional part of nervous system | 1.58e-14 | 54 |
central nervous system | 2.06e-14 | 73 |
neural tube | 1.42e-13 | 52 |
neural rod | 1.42e-13 | 52 |
future spinal cord | 1.42e-13 | 52 |
neural keel | 1.42e-13 | 52 |
nervous system | 1.77e-13 | 75 |
anatomical conduit | 5.31e-13 | 122 |
pre-chordal neural plate | 3.62e-12 | 49 |
gray matter | 5.08e-12 | 34 |
tube | 9.02e-12 | 114 |
brain | 5.79e-11 | 47 |
future brain | 5.79e-11 | 47 |
regional part of brain | 2.23e-10 | 46 |
anterior neural tube | 1.12e-09 | 40 |
brain grey matter | 2.46e-09 | 29 |
regional part of telencephalon | 2.46e-09 | 29 |
telencephalon | 2.46e-09 | 29 |
regional part of forebrain | 4.20e-09 | 39 |
forebrain | 4.20e-09 | 39 |
future forebrain | 4.20e-09 | 39 |
tissue | 5.44e-07 | 349 |
occipital lobe | 7.09e-07 | 10 |
visual cortex | 7.09e-07 | 10 |
neocortex | 7.09e-07 | 10 |