FFCP PHASE1:Mm9::chr17:51952617..51952680,-: Difference between revisions
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{{FFCP|EntrezGene=20230|HGNC=|UniProt=E9Q535|association_with_transcript=0bp_to_ENSMUST00000156416_5end|description=CAGE_peak_3_at_Satb1_5end|id=chr17:51952617..51952680,-|ontology_enrichment_celltype=CL:0000540!1.69e-07!33;CL:0000047!1.69e-07!33;CL:0000031!1.69e-07!33;CL:0000404!1.69e-07!33|ontology_enrichment_celltype_v019_2=CL:0000540,1.52e-07,33;CL:0000047,1.52e-07,33;CL:0000031,1.52e-07,33;CL:0000404,1.52e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!5.29e-19!102;UBERON:0000924!5.29e-19!102;UBERON:0006601!5.29e-19!102;UBERON:0002346!3.29e-18!71;UBERON:0003075!3.29e-18!71;UBERON:0007284!3.29e-18!71;UBERON:0000033!8.28e-18!63;UBERON:0003056!1.09e-15!49;UBERON:0001017!1.05e-14!73;UBERON:0005743!1.05e-14!73;UBERON:0000073!4.38e-14!75;UBERON:0001016!4.38e-14!75;UBERON:0001049!1.02e-12!52;UBERON:0005068!1.02e-12!52;UBERON:0006241!1.02e-12!52;UBERON:0007135!1.02e-12!52;UBERON:0000955!3.28e-12!50;UBERON:0006238!3.28e-12!50;UBERON:0002616!8.77e-12!49;UBERON:0003080!2.79e-11!40;UBERON:0002780!4.11e-11!39;UBERON:0001890!4.11e-11!39;UBERON:0006240!4.11e-11!39;UBERON:0002020!6.21e-10!34;UBERON:0000153!3.50e-09!94;UBERON:0007811!4.38e-09!86;UBERON:0002791!5.69e-09!29;UBERON:0003528!5.69e-09!29;UBERON:0001893!5.69e-09!29;UBERON:0000956!3.87e-08!21;UBERON:0001869!3.87e-08!21;UBERON:0000203!3.87e-08!21;UBERON:0000020!4.66e-07!12;UBERON:0001032!4.66e-07!12;UBERON:0004456!4.66e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0010314,3.50e-22,92;UBERON:0004121,2.13e-17,95;UBERON:0000924,2.13e-17,95;UBERON:0006601,2.13e-17,95;UBERON:0002346,5.03e-17,64;UBERON:0003075,5.03e-17,64;UBERON:0007284,5.03e-17,64;UBERON:0010371,1.23e-16,73;UBERON:0003056,1.14e-15,49;UBERON:0001017,1.86e-14,73;UBERON:0001016,7.66e-14,75;UBERON:0000073,1.02e-12,54;UBERON:0001049,1.44e-12,52;UBERON:0005068,1.44e-12,52;UBERON:0006241,1.44e-12,52;UBERON:0007135,1.44e-12,52;UBERON:0000955,1.17e-11,47;UBERON:0006238,1.17e-11,47;UBERON:0003080,3.06e-11,40;UBERON:0002616,3.13e-11,46;UBERON:0002780,4.53e-11,39;UBERON:0001890,4.53e-11,39;UBERON:0006240,4.53e-11,39;UBERON:0002020,6.99e-10,34;UBERON:0003528,6.54e-09,29;UBERON:0002791,6.54e-09,29;UBERON:0001893,6.54e-09,29;UBERON:0000956,4.63e-08,21;UBERON:0001869,4.63e-08,21;UBERON:0000203,4.63e-08,21;UBERON:0000020,4.22e-07,12;UBERON:0001032,4.22e-07,12;UBERON:0004456,4.22e-07,12|phase1_expression=8.0074423552397,0,0,0,0,0.16787927191189,0,1.03298658753261,1.97104211012333,2.10658073689794,1.02730780935303,0.797721589953364,1.02720437958723,1.57356724354195,0.999329285446988,0.404950534779652,0.699561878128147,1.41957974411207,1.23402990245165,0,4.16712121740242,2.6808556824239,1.56719873483361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1374172913703,1.5626706890476,4.18818995179039,4.70585190424811,12.9778642142105,2.91306211818692,0.251793635951155,0.608261587317087,0.183546752161682,0.782391344348039,3.05235218932625,0.659058548203415,2.13872888981712,0.839918529752175,5.75010257459886,1.8456086666351,2.17608642603403,1.34437519656986,0.514518872071894,0.85960031981627,0.515672092277442,8.9019242778223,3.1739458756322,6.33831403506179,0.338844532069132,0,0,0,0.7104801149461,2.39680088414724,4.2264013585371,15.6571314585801,10.5304631898719,13.4607975264884,6.28432165688368,3.75476519617743,11.1466627285608,8.4344014496048,5.51531271966013,4.40463523997555,5.61824287574826,7.37311359629969,7.38563211289086,6.58711033937349,6.77187381723788,6.14202597803038,3.93933827022176,5.04234217663473,6.18720029494702,6.97621235915604,12.4887628702951,1.96888102666279,2.94729084416464,0,0.860423876981386,0,0,0,0,7.16266542671934,0,0,0,8.59144860637751,0,0,0,0.216491041011214,0,0,1.94112595522402,0.258937883647172,7.27366481417641,2.94925055502431,5.1759131313064,6.45723392316964,6.0289056221049,8.70156432804216,4.77533047052767,0.494389935468748,2.02439099687876,5.30766331169925,14.235482795372,13.0296495891632,7.75800405016355,1.86391761218122,5.85561594023094,15.0801628905688,1.02182822083437,3.47463861067169,4.19931911695385,2.28726408731516,6.14141621559773,5.94750783664214,5.27748278874031,7.30062144807561,9.97290283588289,3.53239675751252,6.97637431191358,8.1471491080253,6.59356944233493,4.80173241023982,7.15502310014011,8.71806967850115,11.0353010128067,9.36323074987816,8.13806016312861,15.7844678031081,10.249097622788,15.2733811032358,6.72628763921441,5.38919982332106,4.9167580843633,5.45448484908241,5.47989331068937,5.56094498451196,4.179025998266,4.11564272815887,5.7719937377363,0,1.80143534980301,1.42081749697796,4.97101854085205,4.92504725960302,5.76198596675248,6.39210786080068,6.88674811115913,6.32495162838251,6.51095045301142,5.633741429392,8.87416601990488,7.5697530960201,8.37254066803386,10.2146700027778,7.30999937126662,7.68425403518677,9.93127498826751,6.09840850835969,10.5991750750663,0.330418782983798,0.528901133327089,4.05247676016945,4.87697010906921,3.99489130098489,1.00841762311671,2.00140239460383,2.66315876557583,1.89811624617805,2.470484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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20230 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q535 | |||
|association_with_transcript=0bp_to_ENSMUST00000156416_5end | |||
|cluster_id=chr17:51952617..51952680,- | |||
|description=CAGE_peak_3_at_Satb1_5end | |||
|id=chr17:51952617..51952680,- | |||
|ontology_enrichment_celltype=CL:0000540!1.69e-07!33;CL:0000047!1.69e-07!33;CL:0000031!1.69e-07!33;CL:0000404!1.69e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.52e-07,33;CL:0000047,1.52e-07,33;CL:0000031,1.52e-07,33;CL:0000404,1.52e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.29e-19!102;UBERON:0000924!5.29e-19!102;UBERON:0006601!5.29e-19!102;UBERON:0002346!3.29e-18!71;UBERON:0003075!3.29e-18!71;UBERON:0007284!3.29e-18!71;UBERON:0000033!8.28e-18!63;UBERON:0003056!1.09e-15!49;UBERON:0001017!1.05e-14!73;UBERON:0005743!1.05e-14!73;UBERON:0000073!4.38e-14!75;UBERON:0001016!4.38e-14!75;UBERON:0001049!1.02e-12!52;UBERON:0005068!1.02e-12!52;UBERON:0006241!1.02e-12!52;UBERON:0007135!1.02e-12!52;UBERON:0000955!3.28e-12!50;UBERON:0006238!3.28e-12!50;UBERON:0002616!8.77e-12!49;UBERON:0003080!2.79e-11!40;UBERON:0002780!4.11e-11!39;UBERON:0001890!4.11e-11!39;UBERON:0006240!4.11e-11!39;UBERON:0002020!6.21e-10!34;UBERON:0000153!3.50e-09!94;UBERON:0007811!4.38e-09!86;UBERON:0002791!5.69e-09!29;UBERON:0003528!5.69e-09!29;UBERON:0001893!5.69e-09!29;UBERON:0000956!3.87e-08!21;UBERON:0001869!3.87e-08!21;UBERON:0000203!3.87e-08!21;UBERON:0000020!4.66e-07!12;UBERON:0001032!4.66e-07!12;UBERON:0004456!4.66e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,3.50e-22,92;UBERON:0004121,2.13e-17,95;UBERON:0000924,2.13e-17,95;UBERON:0006601,2.13e-17,95;UBERON:0002346,5.03e-17,64;UBERON:0003075,5.03e-17,64;UBERON:0007284,5.03e-17,64;UBERON:0010371,1.23e-16,73;UBERON:0003056,1.14e-15,49;UBERON:0001017,1.86e-14,73;UBERON:0001016,7.66e-14,75;UBERON:0000073,1.02e-12,54;UBERON:0001049,1.44e-12,52;UBERON:0005068,1.44e-12,52;UBERON:0006241,1.44e-12,52;UBERON:0007135,1.44e-12,52;UBERON:0000955,1.17e-11,47;UBERON:0006238,1.17e-11,47;UBERON:0003080,3.06e-11,40;UBERON:0002616,3.13e-11,46;UBERON:0002780,4.53e-11,39;UBERON:0001890,4.53e-11,39;UBERON:0006240,4.53e-11,39;UBERON:0002020,6.99e-10,34;UBERON:0003528,6.54e-09,29;UBERON:0002791,6.54e-09,29;UBERON:0001893,6.54e-09,29;UBERON:0000956,4.63e-08,21;UBERON:0001869,4.63e-08,21;UBERON:0000203,4.63e-08,21;UBERON:0000020,4.22e-07,12;UBERON:0001032,4.22e-07,12;UBERON:0004456,4.22e-07,12 | |||
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| |||
|short_description=p3@Satb1 | |||
}} |
Revision as of 02:05, 5 August 2015
Short description: | p3@Satb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Satb1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000156416_5end |
EntrezGene: | 20230 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.52e-07 | 33 |
neuronal stem cell | 1.52e-07 | 33 |
neuroblast | 1.52e-07 | 33 |
electrically signaling cell | 1.52e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 3.50e-22 | 92 |
ectoderm-derived structure | 2.13e-17 | 95 |
ectoderm | 2.13e-17 | 95 |
presumptive ectoderm | 2.13e-17 | 95 |
neurectoderm | 5.03e-17 | 64 |
neural plate | 5.03e-17 | 64 |
presumptive neural plate | 5.03e-17 | 64 |
ecto-epithelium | 1.23e-16 | 73 |
pre-chordal neural plate | 1.14e-15 | 49 |
central nervous system | 1.86e-14 | 73 |
nervous system | 7.66e-14 | 75 |
regional part of nervous system | 1.02e-12 | 54 |
neural tube | 1.44e-12 | 52 |
neural rod | 1.44e-12 | 52 |
future spinal cord | 1.44e-12 | 52 |
neural keel | 1.44e-12 | 52 |
brain | 1.17e-11 | 47 |
future brain | 1.17e-11 | 47 |
anterior neural tube | 3.06e-11 | 40 |
regional part of brain | 3.13e-11 | 46 |
regional part of forebrain | 4.53e-11 | 39 |
forebrain | 4.53e-11 | 39 |
future forebrain | 4.53e-11 | 39 |
gray matter | 6.99e-10 | 34 |
brain grey matter | 6.54e-09 | 29 |
regional part of telencephalon | 6.54e-09 | 29 |
telencephalon | 6.54e-09 | 29 |
cerebral cortex | 4.63e-08 | 21 |
cerebral hemisphere | 4.63e-08 | 21 |
pallium | 4.63e-08 | 21 |
sense organ | 4.22e-07 | 12 |
sensory system | 4.22e-07 | 12 |
entire sense organ system | 4.22e-07 | 12 |