FFCP PHASE1:Mm9::chr2:11423719..11423753,-: Difference between revisions
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{{FFCP|EntrezGene=170768|HGNC=|MCL_coexpression_id=22|UniProt=A2AUP3,A2AUP4|association_with_transcript=0bp_to_ENSMUST00000100411,ENSMUST00000114844_5end|description=CAGE_peak_3_at_Pfkfb3_5end|id=chr2:11423719..11423753,-|ontology_enrichment_celltype=CL:0000540!2.67e-13!33;CL:0000047!2.67e-13!33;CL:0000031!2.67e-13!33;CL:0000404!2.67e-13!33;CL:0000117!7.51e-12!23;CL:0000337!7.51e-12!23;CL:0000393!3.00e-11!39;CL:0000211!3.00e-11!39;CL:0002319!2.58e-09!43;CL:0000221!5.17e-09!44;CL:0000133!5.17e-09!44;CL:0000055!1.64e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.76e-15,33;CL:0000047,2.76e-15,33;CL:0000031,2.76e-15,33;CL:0000404,2.76e-15,33;CL:0000117,6.01e-14,23;CL:0000337,6.01e-14,23;CL:0000393,2.07e-12,39;CL:0000211,2.07e-12,39;CL:0002319,9.18e-11,43;CL:0000221,3.29e-10,44;CL:0000133,3.29e-10,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!4.71e-12!71;UBERON:0003075!4.71e-12!71;UBERON:0007284!4.71e-12!71;UBERON:0001017!5.62e-12!73;UBERON:0005743!5.62e-12!73;UBERON:0003056!9.15e-12!49;UBERON:0000073!1.10e-11!75;UBERON:0001016!1.10e-11!75;UBERON:0004121!8.67e-11!102;UBERON:0000924!8.67e-11!102;UBERON:0006601!8.67e-11!102;UBERON:0002020!4.40e-10!34;UBERON:0000033!8.22e-10!63;UBERON:0001049!1.85e-09!52;UBERON:0005068!1.85e-09!52;UBERON:0006241!1.85e-09!52;UBERON:0007135!1.85e-09!52;UBERON:0003080!8.06e-09!40;UBERON:0002780!2.05e-08!39;UBERON:0001890!2.05e-08!39;UBERON:0006240!2.05e-08!39;UBERON:0002791!5.01e-08!29;UBERON:0003528!5.01e-08!29;UBERON:0001893!5.01e-08!29;UBERON:0000955!5.90e-08!50;UBERON:0006238!5.90e-08!50;UBERON:0000468!1.21e-07!333;UBERON:0002616!1.24e-07!49;UBERON:0000922!4.47e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.08e-14,64;UBERON:0003075,1.08e-14,64;UBERON:0007284,1.08e-14,64;UBERON:0001017,7.64e-13,73;UBERON:0001016,1.92e-12,75;UBERON:0003056,4.72e-12,49;UBERON:0004121,6.92e-12,95;UBERON:0000924,6.92e-12,95;UBERON:0006601,6.92e-12,95;UBERON:0002020,1.01e-10,34;UBERON:0010371,1.79e-10,73;UBERON:0000073,5.77e-10,54;UBERON:0001049,6.62e-10,52;UBERON:0005068,6.62e-10,52;UBERON:0006241,6.62e-10,52;UBERON:0007135,6.62e-10,52;UBERON:0003080,1.16e-08,40;UBERON:0003528,2.53e-08,29;UBERON:0002791,2.53e-08,29;UBERON:0001893,2.53e-08,29;UBERON:0002780,3.34e-08,39;UBERON:0001890,3.34e-08,39;UBERON:0006240,3.34e-08,39;UBERON:0000955,8.33e-08,47;UBERON:0006238,8.33e-08,47;UBERON:0002616,1.94e-07,46;UBERON:0010314,3.73e-07,92|phase1_expression=0.640595388419176,0.697950815278722,0.909998478779072,0.90739263392049,1.00179145989269,0.503637815735669,0.934450562382103,0,0.563154888606667,0.468129052643987,0.171217968225505,0.478632953972018,0,0.0874204024189974,0.999329285446988,0.607425802169478,0,1.10411757875383,1.09691546884591,3.39511721438424,0.680346321208558,0.397163804803541,0.783599367416806,0.47997726838022,0.91763712426868,1.14846392823004,0,0.430942465371778,0.190023419456374,0.252030129759931,0.665191531965914,0.635030673459631,0.61506478758457,0,0.866554859253824,0.332469290716985,0.408338712524738,0.418531630736908,0,0,0,0,0,0.755380907853464,0.811015449756117,1.65192076945513,0,1.96222640742402,0.878744730937887,1.55543919259427,0.979904951377538,0,0.167782606057736,0,0,1.28629718017973,0.85960031981627,0,7.48570905180512,7.93486468908049,4.43681982454325,0.677689064138264,0.889294796111139,0,0,0,0.599200221036809,0,10.3689612308478,13.3655878948374,12.4091727197315,2.57085885963423,1.32521124570968,7.83941114975706,8.62609239164127,11.9498442259303,1.10115880999389,1.27687338085188,1.84327839907492,7.91317726381163,6.77008562657831,4.68822033501084,1.67509799400829,1.68828783009504,2.75036845998258,3.83017161115768,2.98980529678116,5.21918448310842,1.13589289999776,0.604572480854284,0.289864488701678,0,0,0,0,0,0.561777680527007,0,0,0.35333957451034,0.704217098883403,0,0,0,0.216491041011214,0.506719730950197,0.505524445014783,0.45673551887624,1.03575153458869,0.890652834388949,1.73485326766136,0.913396434936424,0.461230994512117,0.753613202763113,0.705532242814229,0.502666365318702,0.741584903203122,1.44599356919912,0,0.485300549842228,0.662524555381181,0.484875253135222,0,0.585561594023094,0,0.255457055208591,0.718890747035522,0,0.254140454146129,2.54644086988199,2.74500361691176,12.8167439155122,3.12883776346098,2.04572365864264,2.0778804455956,1.46017136760982,1.42575109390443,0.497627882440372,1.51633655060205,2.10441855886474,2.08192708740326,1.60931473103431,2.88099407688559,2.26057226753573,1.83698547708585,2.3060469651273,1.78033276663485,2.32833033665114,2.80238390812695,3.02569728268511,3.34307135911503,2.84954452155847,2.78047249225598,1.39300866608867,0.823128545631774,1.99034266818493,0,0.257347907114715,0.284163499395593,0.207125772535502,0.938104239924385,1.08037236876609,1.18372367792605,0.590292695242212,0.925602677324269,1.16266972375204,2.14618721119695,0.583826711835847,0.822799249567402,0.820837320395476,0.891756905004413,0.730999937126662,0.658650345873152,0.402619256281115,2.733769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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:170768 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A2AUP3,uniprot:A2AUP4 | |||
|association_with_transcript=0bp_to_ENSMUST00000100411,ENSMUST00000114844_5end | |||
|cluster_id=chr2:11423719..11423753,- | |||
|description=CAGE_peak_3_at_Pfkfb3_5end | |||
|id=chr2:11423719..11423753,- | |||
|ontology_enrichment_celltype=CL:0000540!2.67e-13!33;CL:0000047!2.67e-13!33;CL:0000031!2.67e-13!33;CL:0000404!2.67e-13!33;CL:0000117!7.51e-12!23;CL:0000337!7.51e-12!23;CL:0000393!3.00e-11!39;CL:0000211!3.00e-11!39;CL:0002319!2.58e-09!43;CL:0000221!5.17e-09!44;CL:0000133!5.17e-09!44;CL:0000055!1.64e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.76e-15,33;CL:0000047,2.76e-15,33;CL:0000031,2.76e-15,33;CL:0000404,2.76e-15,33;CL:0000117,6.01e-14,23;CL:0000337,6.01e-14,23;CL:0000393,2.07e-12,39;CL:0000211,2.07e-12,39;CL:0002319,9.18e-11,43;CL:0000221,3.29e-10,44;CL:0000133,3.29e-10,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!4.71e-12!71;UBERON:0003075!4.71e-12!71;UBERON:0007284!4.71e-12!71;UBERON:0001017!5.62e-12!73;UBERON:0005743!5.62e-12!73;UBERON:0003056!9.15e-12!49;UBERON:0000073!1.10e-11!75;UBERON:0001016!1.10e-11!75;UBERON:0004121!8.67e-11!102;UBERON:0000924!8.67e-11!102;UBERON:0006601!8.67e-11!102;UBERON:0002020!4.40e-10!34;UBERON:0000033!8.22e-10!63;UBERON:0001049!1.85e-09!52;UBERON:0005068!1.85e-09!52;UBERON:0006241!1.85e-09!52;UBERON:0007135!1.85e-09!52;UBERON:0003080!8.06e-09!40;UBERON:0002780!2.05e-08!39;UBERON:0001890!2.05e-08!39;UBERON:0006240!2.05e-08!39;UBERON:0002791!5.01e-08!29;UBERON:0003528!5.01e-08!29;UBERON:0001893!5.01e-08!29;UBERON:0000955!5.90e-08!50;UBERON:0006238!5.90e-08!50;UBERON:0000468!1.21e-07!333;UBERON:0002616!1.24e-07!49;UBERON:0000922!4.47e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.08e-14,64;UBERON:0003075,1.08e-14,64;UBERON:0007284,1.08e-14,64;UBERON:0001017,7.64e-13,73;UBERON:0001016,1.92e-12,75;UBERON:0003056,4.72e-12,49;UBERON:0004121,6.92e-12,95;UBERON:0000924,6.92e-12,95;UBERON:0006601,6.92e-12,95;UBERON:0002020,1.01e-10,34;UBERON:0010371,1.79e-10,73;UBERON:0000073,5.77e-10,54;UBERON:0001049,6.62e-10,52;UBERON:0005068,6.62e-10,52;UBERON:0006241,6.62e-10,52;UBERON:0007135,6.62e-10,52;UBERON:0003080,1.16e-08,40;UBERON:0003528,2.53e-08,29;UBERON:0002791,2.53e-08,29;UBERON:0001893,2.53e-08,29;UBERON:0002780,3.34e-08,39;UBERON:0001890,3.34e-08,39;UBERON:0006240,3.34e-08,39;UBERON:0000955,8.33e-08,47;UBERON:0006238,8.33e-08,47;UBERON:0002616,1.94e-07,46;UBERON:0010314,3.73e-07,92 | |||
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| |||
|short_description=p3@Pfkfb3 | |||
}} |
Revision as of 09:54, 6 August 2015
Short description: | p3@Pfkfb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Pfkfb3_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000100411, ENSMUST00000114844_5end |
EntrezGene: | 170768 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.76e-15 | 33 |
neuronal stem cell | 2.76e-15 | 33 |
neuroblast | 2.76e-15 | 33 |
electrically signaling cell | 2.76e-15 | 33 |
CNS neuron (sensu Vertebrata) | 6.01e-14 | 23 |
neuroblast (sensu Vertebrata) | 6.01e-14 | 23 |
electrically responsive cell | 2.07e-12 | 39 |
electrically active cell | 2.07e-12 | 39 |
neural cell | 9.18e-11 | 43 |
ectodermal cell | 3.29e-10 | 44 |
neurectodermal cell | 3.29e-10 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.08e-14 | 64 |
neural plate | 1.08e-14 | 64 |
presumptive neural plate | 1.08e-14 | 64 |
central nervous system | 7.64e-13 | 73 |
nervous system | 1.92e-12 | 75 |
pre-chordal neural plate | 4.72e-12 | 49 |
ectoderm-derived structure | 6.92e-12 | 95 |
ectoderm | 6.92e-12 | 95 |
presumptive ectoderm | 6.92e-12 | 95 |
gray matter | 1.01e-10 | 34 |
ecto-epithelium | 1.79e-10 | 73 |
regional part of nervous system | 5.77e-10 | 54 |
neural tube | 6.62e-10 | 52 |
neural rod | 6.62e-10 | 52 |
future spinal cord | 6.62e-10 | 52 |
neural keel | 6.62e-10 | 52 |
anterior neural tube | 1.16e-08 | 40 |
brain grey matter | 2.53e-08 | 29 |
regional part of telencephalon | 2.53e-08 | 29 |
telencephalon | 2.53e-08 | 29 |
regional part of forebrain | 3.34e-08 | 39 |
forebrain | 3.34e-08 | 39 |
future forebrain | 3.34e-08 | 39 |
brain | 8.33e-08 | 47 |
future brain | 8.33e-08 | 47 |
regional part of brain | 1.94e-07 | 46 |
structure with developmental contribution from neural crest | 3.73e-07 | 92 |