FFCP PHASE1:Hg19::chrX:123095155..123095179,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10735 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11355 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N3U4,B1AMT1 | |||
|association_with_transcript=0bp_to_ENST00000371160,ENST00000435103,uc004eub.2_5end | |||
|description=CAGE_peak_6_at_STAG2_5end | |||
|id=chrX:123095155..123095179,+ | |||
|ontology_enrichment_celltype=CL:0000542!6.28e-13!53;CL:0000051!6.28e-13!53;CL:0000838!2.01e-12!52;CL:0000738!7.18e-09!140;CL:0002031!8.37e-08!124;CL:0000791!9.16e-08!18;CL:0000789!9.16e-08!18;CL:0002420!9.16e-08!18;CL:0002419!9.16e-08!18;CL:0000790!9.16e-08!18;CL:0002087!1.53e-07!119;CL:0000236!2.46e-07!14;CL:0000945!2.63e-07!24;CL:0000826!2.63e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000236;6.67e-09;13!CL:0000542;7.26e-09;53!CL:0000791;3.45e-08;18!CL:0000789;3.45e-08;18!CL:0002419;3.45e-08;18!CL:0000945;5.12e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.98e-13,53;CL:0000051,6.98e-13,53;CL:0000838,2.40e-12,52;CL:0000791,2.47e-08,18;CL:0000789,2.47e-08,18;CL:0002420,2.47e-08,18;CL:0002419,2.47e-08,18;CL:0000790,2.47e-08,18;CL:0000236,1.38e-07,14;CL:0000945,6.24e-07,24;CL:0000826,6.24e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;7.26e-09;53!CL:0000790;3.45e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.32e-29!115;UBERON:0001049!1.12e-13!57;UBERON:0005068!1.12e-13!57;UBERON:0006241!1.12e-13!57;UBERON:0007135!1.12e-13!57;UBERON:0003080!1.72e-11!42;UBERON:0002780!3.00e-11!41;UBERON:0001890!3.00e-11!41;UBERON:0006240!3.00e-11!41;UBERON:0001017!1.94e-10!82;UBERON:0000073!2.14e-10!94;UBERON:0001016!2.14e-10!94;UBERON:0005743!5.79e-10!86;UBERON:0002616!2.24e-09!59;UBERON:0000955!1.31e-08!69;UBERON:0006238!1.31e-08!69;UBERON:0002020!2.18e-08!34;UBERON:0003528!2.18e-08!34;UBERON:0001893!4.52e-08!34;UBERON:0002791!6.83e-08!33;UBERON:0001869!1.65e-07!32;UBERON:0003075!3.38e-07!86;UBERON:0007284!3.38e-07!86;UBERON:0002619!3.98e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;6.08e-10;114!UBERON:0002780;1.18e-08;41!UBERON:0001890;1.18e-08;41!UBERON:0000073;2.02e-08;53!UBERON:0002616;2.02e-08;53!UBERON:0002619;2.21e-07;22!UBERON:0003528;2.33e-07;34!UBERON:0002020;2.33e-07;34!UBERON:0002791;3.87e-07;32!UBERON:0001893;4.72e-07;34!UBERON:0001869;6.10e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.60e-32,114;UBERON:0001049,1.14e-14,56;UBERON:0005068,1.14e-14,56;UBERON:0006241,1.14e-14,56;UBERON:0007135,1.14e-14,56;UBERON:0000073,3.17e-13,53;UBERON:0002616,3.17e-13,53;UBERON:0001016,9.59e-12,89;UBERON:0002780,1.06e-11,41;UBERON:0001890,1.06e-11,41;UBERON:0003080,1.06e-11,41;UBERON:0006240,1.06e-11,41;UBERON:0001017,1.47e-11,81;UBERON:0011216,5.61e-10,223;UBERON:0000955,2.26e-09,68;UBERON:0006238,2.26e-09,68;UBERON:0003528,1.29e-08,34;UBERON:0002020,1.29e-08,34;UBERON:0001893,2.79e-08,34;UBERON:0003075,3.62e-08,82;UBERON:0007284,3.62e-08,82;UBERON:0002791,8.85e-08,32;UBERON:0001869,1.13e-07,32;UBERON:0002619,1.23e-07,22;UBERON:0002346,2.44e-07,86;UBERON:0001950,7.83e-07,20 | |||
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| |||
|short_description=p6@STAG2 | |||
}} |
Revision as of 06:50, 23 January 2014
Short description: | p6@STAG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_STAG2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000371160, ENST00000435103, uc004eub.2_5end |
EntrezGene: | STAG2 |
HGNC: | 11355 |
UniProt: | Q8N3U4B1AMT1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.98e-13 | 53 |
common lymphoid progenitor | 6.98e-13 | 53 |
lymphoid lineage restricted progenitor cell | 2.40e-12 | 52 |
mature alpha-beta T cell | 2.47e-08 | 18 |
alpha-beta T cell | 2.47e-08 | 18 |
immature T cell | 2.47e-08 | 18 |
mature T cell | 2.47e-08 | 18 |
immature alpha-beta T cell | 2.47e-08 | 18 |
B cell | 1.38e-07 | 14 |
lymphocyte of B lineage | 6.24e-07 | 24 |
pro-B cell | 6.24e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.60e-32 | 114 |
neural tube | 1.14e-14 | 56 |
neural rod | 1.14e-14 | 56 |
future spinal cord | 1.14e-14 | 56 |
neural keel | 1.14e-14 | 56 |
regional part of nervous system | 3.17e-13 | 53 |
regional part of brain | 3.17e-13 | 53 |
nervous system | 9.59e-12 | 89 |
regional part of forebrain | 1.06e-11 | 41 |
forebrain | 1.06e-11 | 41 |
anterior neural tube | 1.06e-11 | 41 |
future forebrain | 1.06e-11 | 41 |
central nervous system | 1.47e-11 | 81 |
organ system subdivision | 5.61e-10 | 223 |
brain | 2.26e-09 | 68 |
future brain | 2.26e-09 | 68 |
brain grey matter | 1.29e-08 | 34 |
gray matter | 1.29e-08 | 34 |
telencephalon | 2.79e-08 | 34 |
neural plate | 3.62e-08 | 82 |
presumptive neural plate | 3.62e-08 | 82 |
regional part of telencephalon | 8.85e-08 | 32 |
cerebral hemisphere | 1.13e-07 | 32 |
regional part of cerebral cortex | 1.23e-07 | 22 |
neurectoderm | 2.44e-07 | 86 |
neocortex | 7.83e-07 | 20 |