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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008444
|DRA_sample_Accession=CAGE@DRS008444
|accession_numbers=CAGE;DRX008552;DRR009424;DRZ000849;DRZ002234
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000271
|is_a=EFO:0002091;;FF:0000271
|is_obsolete=
|is_obsolete=
|library_id=CNhs12369
|library_ids=CNhs12369
|library_ids=CNhs12369
|name=mesenchymal precursor cell - cardiac, donor2
|name=mesenchymal precursor cell - cardiac, donor2
Line 87: Line 89:
|top_motifs=ALX4:1.81388521006;XBP1:1.53869708896;TAL1_TCF{3,4,12}:1.52434032796;ESR1:1.38265883139;RXRA_VDR{dimer}:1.35411706469;UFEwm:1.29635504607;EBF1:1.27696240811;HOX{A5,B5}:1.25881465185;bHLH_family:1.24524401531;HOX{A4,D4}:1.2070836302;PAX1,9:1.202695718;MAFB:1.1971819692;RXR{A,B,G}:1.1599115754;EN1,2:1.13992849415;ZNF238:1.10046454776;NKX2-2,8:1.04328046169;HIF1A:1.01135230878;EVI1:1.0112031931;IKZF1:1.00437776042;TBX4,5:0.992594346703;TLX1..3_NFIC{dimer}:0.992062143634;HSF1,2:0.952197324479;TEAD1:0.9463023723;ATF6:0.945069392084;GLI1..3:0.927291820496;HES1:0.899504582017;SRF:0.894218455667;GFI1B:0.893337747898;GZF1:0.828391545072;KLF4:0.806263199377;NFE2L2:0.769464894209;POU3F1..4:0.75000992387;AIRE:0.734340123684;HMX1:0.728613713927;HLF:0.724364528889;STAT2,4,6:0.711170875863;LHX3,4:0.697881219148;NKX3-1:0.687878358995;NFE2L1:0.675515606965;NFATC1..3:0.674962355546;NKX2-1,4:0.657262372751;NKX3-2:0.655539880179;TFCP2:0.640393148973;GTF2I:0.62443459849;PAX4:0.558614326743;MYBL2:0.54884097881;PRDM1:0.544488352794;ZIC1..3:0.527879804367;SPZ1:0.523652417238;HAND1,2:0.514511795353;EGR1..3:0.477568588943;SMAD1..7,9:0.447718937818;GATA4:0.436757662804;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.421044788943;ESRRA:0.419665095621;NR3C1:0.41808407779;GCM1,2:0.415625716083;AHR_ARNT_ARNT2:0.406980147663;FOS_FOS{B,L1}_JUN{B,D}:0.370662632762;TP53:0.363836529575;ZBTB6:0.36213362198;ZNF423:0.360768094193;RFX1:0.3578329865;NFIX:0.347488802541;TFAP4:0.346987442297;PATZ1:0.341392016369;TOPORS:0.338592830424;TFAP2B:0.332443041333;SREBF1,2:0.331959654005;EP300:0.32165296065;RREB1:0.313929129619;PAX5:0.312685276773;NHLH1,2:0.303445216675;GTF2A1,2:0.28979370137;ZNF384:0.271536257517;MAZ:0.267324009631;HIC1:0.265736770338;STAT5{A,B}:0.248482757319;NR6A1:0.242003502904;DBP:0.240895389796;TEF:0.238524460376;FOXM1:0.236717491951;XCPE1{core}:0.227802859206;BACH2:0.208814234374;ZFP161:0.198183180784;FOSL2:0.190987987774;ZNF148:0.183294887695;ZBTB16:0.178319258338;MTE{core}:0.174528108157;MEF2{A,B,C,D}:0.173979753042;AR:0.172806736368;IRF1,2:0.16780941946;FOXL1:0.159970064677;ATF5_CREB3:0.154078985098;CREB1:0.136094788389;CEBPA,B_DDIT3:0.13136433975;NFE2:0.125545391112;TFAP2{A,C}:0.110516279219;MYFfamily:0.106865877087;BPTF:0.0852901939942;MZF1:0.0626870772568;HNF1A:0.0582291110848;PAX8:0.0516983942663;TBP:0.0493072258515;YY1:0.041913489968;PAX6:0.035462358281;SOX17:0.0338263899144;LEF1_TCF7_TCF7L1,2:0.0203025743448;FOXP3:0.0094506369471;VSX1,2:-0.00247048162314;PAX2:-0.0112896208789;NANOG{mouse}:-0.0136303877537;ELK1,4_GABP{A,B1}:-0.0157305903349;JUN:-0.0196518027084;FOX{I1,J2}:-0.0248557214051;FOXO1,3,4:-0.0293183132147;NKX6-1,2:-0.0386670073643;CDC5L:-0.0642089431338;ATF2:-0.0935788952151;ATF4:-0.103445087323;SP1:-0.113828704604;NRF1:-0.122214841229;STAT1,3:-0.125738184961;ONECUT1,2:-0.126700432731;ARID5B:-0.129653815388;TLX2:-0.132327945403;RORA:-0.140468772402;NR1H4:-0.150813442582;RUNX1..3:-0.163595217494;HNF4A_NR2F1,2:-0.192065393328;NFKB1_REL_RELA:-0.201790578265;FOXD3:-0.209796904658;HBP1_HMGB_SSRP1_UBTF:-0.213159162487;LMO2:-0.216903617833;ZNF143:-0.222597530826;HMGA1,2:-0.235737866653;MED-1{core}:-0.251799402915;POU6F1:-0.264184681961;REST:-0.289408820221;POU1F1:-0.296005052059;TFDP1:-0.311722257587;CDX1,2,4:-0.325826328251;MTF1:-0.330729736513;RFX2..5_RFXANK_RFXAP:-0.354939718935;IRF7:-0.372134957663;NFIL3:-0.372949107373;FOX{D1,D2}:-0.373037922962;GFI1:-0.398021505888;MYB:-0.425358426633;PRRX1,2:-0.437583703252;PAX3,7:-0.451179720126;TGIF1:-0.469199526557;ADNP_IRX_SIX_ZHX:-0.49675646408;SPI1:-0.51186217972;CRX:-0.53337541998;SOX2:-0.533725395318;PBX1:-0.554083330855;ETS1,2:-0.555808289969;ELF1,2,4:-0.560034144452;NR5A1,2:-0.575619824978;E2F1..5:-0.587584810929;HOX{A6,A7,B6,B7}:-0.599036395764;FOXA2:-0.605583434315;FOXP1:-0.626022536927;PPARG:-0.628176733864;POU5F1:-0.631095930704;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.646546939246;ALX1:-0.647233531586;BREu{core}:-0.649857056349;GATA6:-0.650018911839;SPIB:-0.698894695567;FOXN1:-0.743143045554;RBPJ:-0.757367203082;NFY{A,B,C}:-0.763184549787;DMAP1_NCOR{1,2}_SMARC:-0.807746175164;FOXQ1:-0.843116801088;MYOD1:-0.862167460844;SOX{8,9,10}:-0.889997072358;SNAI1..3:-0.956909638553;NKX2-3_NKX2-5:-0.971111795875;CUX2:-1.03919452991;ZEB1:-1.04715304658;HOXA9_MEIS1:-1.04843809271;OCT4_SOX2{dimer}:-1.06293605235;T:-1.06591853614;NANOG:-1.07245812535;SOX5:-1.08389969375;PDX1:-1.2035290551;PITX1..3:-1.25077162497;FOX{F1,F2,J1}:-1.3353626437;POU2F1..3:-1.42523708218;IKZF2:-1.45330601371
|top_motifs=ALX4:1.81388521006;XBP1:1.53869708896;TAL1_TCF{3,4,12}:1.52434032796;ESR1:1.38265883139;RXRA_VDR{dimer}:1.35411706469;UFEwm:1.29635504607;EBF1:1.27696240811;HOX{A5,B5}:1.25881465185;bHLH_family:1.24524401531;HOX{A4,D4}:1.2070836302;PAX1,9:1.202695718;MAFB:1.1971819692;RXR{A,B,G}:1.1599115754;EN1,2:1.13992849415;ZNF238:1.10046454776;NKX2-2,8:1.04328046169;HIF1A:1.01135230878;EVI1:1.0112031931;IKZF1:1.00437776042;TBX4,5:0.992594346703;TLX1..3_NFIC{dimer}:0.992062143634;HSF1,2:0.952197324479;TEAD1:0.9463023723;ATF6:0.945069392084;GLI1..3:0.927291820496;HES1:0.899504582017;SRF:0.894218455667;GFI1B:0.893337747898;GZF1:0.828391545072;KLF4:0.806263199377;NFE2L2:0.769464894209;POU3F1..4:0.75000992387;AIRE:0.734340123684;HMX1:0.728613713927;HLF:0.724364528889;STAT2,4,6:0.711170875863;LHX3,4:0.697881219148;NKX3-1:0.687878358995;NFE2L1:0.675515606965;NFATC1..3:0.674962355546;NKX2-1,4:0.657262372751;NKX3-2:0.655539880179;TFCP2:0.640393148973;GTF2I:0.62443459849;PAX4:0.558614326743;MYBL2:0.54884097881;PRDM1:0.544488352794;ZIC1..3:0.527879804367;SPZ1:0.523652417238;HAND1,2:0.514511795353;EGR1..3:0.477568588943;SMAD1..7,9:0.447718937818;GATA4:0.436757662804;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.421044788943;ESRRA:0.419665095621;NR3C1:0.41808407779;GCM1,2:0.415625716083;AHR_ARNT_ARNT2:0.406980147663;FOS_FOS{B,L1}_JUN{B,D}:0.370662632762;TP53:0.363836529575;ZBTB6:0.36213362198;ZNF423:0.360768094193;RFX1:0.3578329865;NFIX:0.347488802541;TFAP4:0.346987442297;PATZ1:0.341392016369;TOPORS:0.338592830424;TFAP2B:0.332443041333;SREBF1,2:0.331959654005;EP300:0.32165296065;RREB1:0.313929129619;PAX5:0.312685276773;NHLH1,2:0.303445216675;GTF2A1,2:0.28979370137;ZNF384:0.271536257517;MAZ:0.267324009631;HIC1:0.265736770338;STAT5{A,B}:0.248482757319;NR6A1:0.242003502904;DBP:0.240895389796;TEF:0.238524460376;FOXM1:0.236717491951;XCPE1{core}:0.227802859206;BACH2:0.208814234374;ZFP161:0.198183180784;FOSL2:0.190987987774;ZNF148:0.183294887695;ZBTB16:0.178319258338;MTE{core}:0.174528108157;MEF2{A,B,C,D}:0.173979753042;AR:0.172806736368;IRF1,2:0.16780941946;FOXL1:0.159970064677;ATF5_CREB3:0.154078985098;CREB1:0.136094788389;CEBPA,B_DDIT3:0.13136433975;NFE2:0.125545391112;TFAP2{A,C}:0.110516279219;MYFfamily:0.106865877087;BPTF:0.0852901939942;MZF1:0.0626870772568;HNF1A:0.0582291110848;PAX8:0.0516983942663;TBP:0.0493072258515;YY1:0.041913489968;PAX6:0.035462358281;SOX17:0.0338263899144;LEF1_TCF7_TCF7L1,2:0.0203025743448;FOXP3:0.0094506369471;VSX1,2:-0.00247048162314;PAX2:-0.0112896208789;NANOG{mouse}:-0.0136303877537;ELK1,4_GABP{A,B1}:-0.0157305903349;JUN:-0.0196518027084;FOX{I1,J2}:-0.0248557214051;FOXO1,3,4:-0.0293183132147;NKX6-1,2:-0.0386670073643;CDC5L:-0.0642089431338;ATF2:-0.0935788952151;ATF4:-0.103445087323;SP1:-0.113828704604;NRF1:-0.122214841229;STAT1,3:-0.125738184961;ONECUT1,2:-0.126700432731;ARID5B:-0.129653815388;TLX2:-0.132327945403;RORA:-0.140468772402;NR1H4:-0.150813442582;RUNX1..3:-0.163595217494;HNF4A_NR2F1,2:-0.192065393328;NFKB1_REL_RELA:-0.201790578265;FOXD3:-0.209796904658;HBP1_HMGB_SSRP1_UBTF:-0.213159162487;LMO2:-0.216903617833;ZNF143:-0.222597530826;HMGA1,2:-0.235737866653;MED-1{core}:-0.251799402915;POU6F1:-0.264184681961;REST:-0.289408820221;POU1F1:-0.296005052059;TFDP1:-0.311722257587;CDX1,2,4:-0.325826328251;MTF1:-0.330729736513;RFX2..5_RFXANK_RFXAP:-0.354939718935;IRF7:-0.372134957663;NFIL3:-0.372949107373;FOX{D1,D2}:-0.373037922962;GFI1:-0.398021505888;MYB:-0.425358426633;PRRX1,2:-0.437583703252;PAX3,7:-0.451179720126;TGIF1:-0.469199526557;ADNP_IRX_SIX_ZHX:-0.49675646408;SPI1:-0.51186217972;CRX:-0.53337541998;SOX2:-0.533725395318;PBX1:-0.554083330855;ETS1,2:-0.555808289969;ELF1,2,4:-0.560034144452;NR5A1,2:-0.575619824978;E2F1..5:-0.587584810929;HOX{A6,A7,B6,B7}:-0.599036395764;FOXA2:-0.605583434315;FOXP1:-0.626022536927;PPARG:-0.628176733864;POU5F1:-0.631095930704;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.646546939246;ALX1:-0.647233531586;BREu{core}:-0.649857056349;GATA6:-0.650018911839;SPIB:-0.698894695567;FOXN1:-0.743143045554;RBPJ:-0.757367203082;NFY{A,B,C}:-0.763184549787;DMAP1_NCOR{1,2}_SMARC:-0.807746175164;FOXQ1:-0.843116801088;MYOD1:-0.862167460844;SOX{8,9,10}:-0.889997072358;SNAI1..3:-0.956909638553;NKX2-3_NKX2-5:-0.971111795875;CUX2:-1.03919452991;ZEB1:-1.04715304658;HOXA9_MEIS1:-1.04843809271;OCT4_SOX2{dimer}:-1.06293605235;T:-1.06591853614;NANOG:-1.07245812535;SOX5:-1.08389969375;PDX1:-1.2035290551;PITX1..3:-1.25077162497;FOX{F1,F2,J1}:-1.3353626437;POU2F1..3:-1.42523708218;IKZF2:-1.45330601371
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008444
|accession_numbers=DRX008552;DRR009424;DRZ000849;DRZ002234;CAGE
|library_id=CNhs12369
}}
}}

Revision as of 16:49, 17 October 2013


Name:mesenchymal precursor cell - cardiac, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12369
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueheart
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008444
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12369 CAGE DRX008552 DRR009424
Accession ID Hg19

Library idBAMCTSS
CNhs12369 DRZ000849 DRZ002234
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0342
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.184
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.205
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0833
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0612
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.679
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0913
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0826
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.205
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.46
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.239
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.162
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0612
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.115
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0612
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.239
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0612
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.12
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial8.968503e-4
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0612
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.28
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.679
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.115
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.425
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.636
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0552
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.032
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12369

Jaspar motifP-value
MA0002.20.162
MA0003.10.436
MA0004.10.589
MA0006.10.661
MA0007.10.773
MA0009.10.231
MA0014.10.589
MA0017.10.347
MA0018.20.0892
MA0019.10.657
MA0024.11.77784e-4
MA0025.10.117
MA0027.10.811
MA0028.10.0395
MA0029.10.104
MA0030.10.0467
MA0031.10.0831
MA0035.20.448
MA0038.10.0199
MA0039.20.00452
MA0040.10.0732
MA0041.10.336
MA0042.10.45
MA0043.10.283
MA0046.10.115
MA0047.20.959
MA0048.10.104
MA0050.10.629
MA0051.10.537
MA0052.10.224
MA0055.10.356
MA0057.10.703
MA0058.10.406
MA0059.10.549
MA0060.17.38729e-9
MA0061.10.237
MA0062.29.59943e-7
MA0065.20.0557
MA0066.10.957
MA0067.10.686
MA0068.10.946
MA0069.10.883
MA0070.10.393
MA0071.10.722
MA0072.10.9
MA0073.10.831
MA0074.10.073
MA0076.10.0141
MA0077.10.0612
MA0078.10.985
MA0079.20.908
MA0080.22.56833e-8
MA0081.10.00424
MA0083.11.36026e-5
MA0084.10.589
MA0087.10.779
MA0088.10.442
MA0090.18.70695e-4
MA0091.10.137
MA0092.10.448
MA0093.10.421
MA0099.20.0256
MA0100.10.335
MA0101.10.0801
MA0102.20.429
MA0103.12.52851e-4
MA0104.20.997
MA0105.10.419
MA0106.10.158
MA0107.10.0975
MA0108.20.0131
MA0111.10.11
MA0112.20.0489
MA0113.10.43
MA0114.10.199
MA0115.10.182
MA0116.10.923
MA0117.10.395
MA0119.10.135
MA0122.10.599
MA0124.10.207
MA0125.10.0326
MA0131.10.819
MA0135.10.356
MA0136.16.8693e-12
MA0137.20.332
MA0138.20.377
MA0139.10.676
MA0140.10.677
MA0141.10.574
MA0142.10.275
MA0143.10.434
MA0144.10.19
MA0145.10.823
MA0146.10.357
MA0147.10.987
MA0148.10.969
MA0149.10.815
MA0150.10.0813
MA0152.10.00727
MA0153.10.382
MA0154.10.664
MA0155.10.534
MA0156.18.07154e-9
MA0157.10.314
MA0159.10.775
MA0160.10.452
MA0162.10.558
MA0163.10.392
MA0164.10.382
MA0258.10.771
MA0259.10.84



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12369

Novel motifP-value
10.664
100.818
1000.519
1010.526
1020.0523
1030.825
1040.913
1050.216
1060.957
1070.618
1080.0739
1090.464
110.868
1100.114
1110.273
1120.44
1130.00123
1140.957
1150.384
1160.0706
1170.652
1180.413
1190.199
120.882
1200.228
1210.822
1220.0283
1234.06629e-4
1240.172
1250.169
1260.356
1270.47
1280.329
1290.596
130.941
1300.528
1310.592
1320.646
1330.891
1340.211
1350.412
1360.869
1370.175
1380.586
1390.553
140.185
1400.837
1410.935
1420.928
1430.857
1440.289
1450.984
1460.726
1470.0735
1480.862
1490.0957
150.739
1500.593
1510.958
1520.349
1530.272
1540.902
1550.0114
1560.162
1570.887
1580.00563
1590.176
160.0185
1600.933
1610.571
1620.776
1630.257
1640.0708
1650.664
1660.0319
1670.322
1680.664
1690.105
170.786
180.112
190.02
20.238
200.687
210.103
220.212
230.13
240.18
250.0661
260.758
270.863
280.129
290.283
30.779
300.49
310.607
321.18215e-13
330.715
340.764
350.928
360.0135
370.176
380.195
390.18
40.0141
400.0317
410.638
420.164
430.984
440.732
450.885
460.803
470.19
480.487
490.147
50.982
500.811
510.875
520.673
530.0704
540.745
550.106
560.66
570.596
580.133
590.638
60.686
600.698
610.667
620.217
630.759
640.485
650.973
660.123
670.5
680.264
690.672
70.0923
700.928
710.651
720.372
730.164
740.0591
750.701
760.396
770.157
780.0188
790.0237
80.426
800.325
810.604
820.892
830.721
840.978
850.0648
860.256
870.414
880.533
890.117
90.564
900.603
910.865
920.211
930.608
940.886
950.616
960.484
970.302
980.106
990.292



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12369


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000034 (stem cell)
0000569 (cardiac mesenchymal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000271 (human cardiac mesenchymal precursor cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000011 (migratory trunk neural crest cell)
CL:0000221 (ectodermal cell)

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