FF:11783-124B1: Difference between revisions
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|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |top_motifs=RXR{A,B,G}:2.33875168456;SOX{8,9,10}:2.16812196966;TFAP2{A,C}:1.95353578548;PBX1:1.82229890546;ZIC1..3:1.79664624741;GTF2A1,2:1.76765694889;ZNF423:1.74077631701;TFAP4:1.5621963854;bHLH_family:1.50836932888;HES1:1.47390153043;TLX1..3_NFIC{dimer}:1.4504227543;SPZ1:1.36421786728;IKZF1:1.33068496137;HAND1,2:1.28306464831;HIC1:1.21105494858;XCPE1{core}:1.12082517634;ESRRA:1.06680193928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05867181713;ZNF148:1.00176120246;SP1:0.991019343009;EBF1:0.963916450297;TP53:0.908124527675;LHX3,4:0.898984665132;RXRA_VDR{dimer}:0.878339728527;NANOG:0.872216994512;NR6A1:0.859415545879;TFAP2B:0.80980072063;POU2F1..3:0.772340063469;REST:0.768403547635;FOXL1:0.709384351067;TBP:0.707507723343;PAX1,9:0.68185171704;ZBTB6:0.681175289651;PATZ1:0.661235139164;GZF1:0.660986500965;NR5A1,2:0.655726356368;GATA6:0.649105967173;GLI1..3:0.639438064649;ARID5B:0.618500355375;SRF:0.607865430745;AR:0.59598988651;ETS1,2:0.587080674615;PAX5:0.585139574759;SOX5:0.503991423483;MTE{core}:0.499257006417;ZNF238:0.475334419299;LEF1_TCF7_TCF7L1,2:0.46846763621;TEAD1:0.451161180013;SMAD1..7,9:0.446132427683;ESR1:0.44060178124;MYOD1:0.413150952421;STAT2,4,6:0.389540482561;MED-1{core}:0.357830125867;GFI1B:0.352460583874;POU6F1:0.351465794976;SOX2:0.350282953205;HNF4A_NR2F1,2:0.331473260828;ATF6:0.328777185542;RREB1:0.28835205606;NFATC1..3:0.288281453923;HMX1:0.268243504321;FOX{D1,D2}:0.254823082151;MTF1:0.244780150546;UFEwm:0.225872542795;LMO2:0.20873969152;SPIB:0.178151868209;GTF2I:0.160522185004;EP300:0.138716468409;PPARG:0.12872185366;HOX{A5,B5}:0.127420760206;NFE2:0.116927284272;NFKB1_REL_RELA:0.114738867026;NKX2-3_NKX2-5:0.110336914314;PAX6:0.0306542706154;SOX17:0.0159775849122;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0106814613216;HNF1A:0.0102904187782;HBP1_HMGB_SSRP1_UBTF:0.00795016349191;MAFB:-0.0129319866906;NR1H4:-0.0235749739019;FOXM1:-0.0432043405405;FOSL2:-0.0597415116946;BACH2:-0.112489846616;ATF2:-0.12420276278;ELF1,2,4:-0.124802940958;MAZ:-0.131347835295;ADNP_IRX_SIX_ZHX:-0.133896137007;GFI1:-0.145521324364;EGR1..3:-0.14607915307;TOPORS:-0.151620944039;NFY{A,B,C}:-0.162927799025;NR3C1:-0.164171725876;MEF2{A,B,C,D}:-0.195803647085;TFCP2:-0.216455064704;FOS_FOS{B,L1}_JUN{B,D}:-0.220731974639;SNAI1..3:-0.23124640684;NFE2L1:-0.233663216772;POU3F1..4:-0.234072935199;IKZF2:-0.252088419532;CREB1:-0.267423868581;SPI1:-0.275989670994;MZF1:-0.280455076586;XBP1:-0.308583873754;STAT5{A,B}:-0.309852822521;ONECUT1,2:-0.321369917054;HOX{A6,A7,B6,B7}:-0.324802832765;ZFP161:-0.344730282729;T:-0.35514189723;ZEB1:-0.356717662235;JUN:-0.368903789314;TAL1_TCF{3,4,12}:-0.380549639191;IRF1,2:-0.387854300627;ZNF143:-0.390741525797;HOXA9_MEIS1:-0.39170973877;FOXQ1:-0.42985697702;YY1:-0.443706631892;NFE2L2:-0.457141512199;ALX4:-0.460105635907;CUX2:-0.462018391047;PITX1..3:-0.476092270354;GCM1,2:-0.507665130179;NANOG{mouse}:-0.516718112756;E2F1..5:-0.517606670733;SREBF1,2:-0.51865222547;MYB:-0.518975034014;FOXA2:-0.544501375656;RORA:-0.54822139126;NHLH1,2:-0.588872049681;RUNX1..3:-0.597821137242;HIF1A:-0.604808317565;PAX8:-0.636894264073;TFDP1:-0.644060243005;NKX3-1:-0.670742668978;RBPJ:-0.674847309159;ATF4:-0.684626019329;MYFfamily:-0.708900423454;HLF:-0.727916149479;NKX3-2:-0.785933225467;TEF:-0.798221497313;RFX1:-0.821912224189;CDC5L:-0.835690761868;NKX2-2,8:-0.849620758672;CEBPA,B_DDIT3:-0.849804545004;FOX{I1,J2}:-0.865458661241;PAX3,7:-0.907674212825;STAT1,3:-0.914168473802;HSF1,2:-0.951799431463;POU5F1:-0.95317336197;IRF7:-0.959082237974;KLF4:-0.964928175116;GATA4:-0.988348650789;PRDM1:-1.01696143845;FOX{F1,F2,J1}:-1.04229080314;BPTF:-1.08004368898;PRRX1,2:-1.09089234492;FOXD3:-1.09325731297;PAX2:-1.10412906175;DMAP1_NCOR{1,2}_SMARC:-1.12190623319;EVI1:-1.12449310177;AHR_ARNT_ARNT2:-1.1262066224;NRF1:-1.14904837619;ATF5_CREB3:-1.15053032681;CRX:-1.15461731706;TBX4,5:-1.15467286156;EN1,2:-1.16935941104;BREu{core}:-1.17597956898;NFIX:-1.28211162171;DBP:-1.28220088051;ZNF384:-1.28411913435;MYBL2:-1.33299064565;PAX4:-1.34903722119;POU1F1:-1.35980799744;AIRE:-1.39121428822;TLX2:-1.40695994069;RFX2..5_RFXANK_RFXAP:-1.43652766938;OCT4_SOX2{dimer}:-1.44651922734;HMGA1,2:-1.4548792959;ELK1,4_GABP{A,B1}:-1.46382784614;PDX1:-1.47527019626;FOXN1:-1.47647368879;TGIF1:-1.49182902342;NFIL3:-1.511702569;NKX2-1,4:-1.56408220445;ALX1:-1.68115139888;FOXO1,3,4:-1.74841253642;VSX1,2:-1.78747662774;FOXP1:-1.82682713286;FOXP3:-1.8542592104;ZBTB16:-1.97778066608;HOX{A4,D4}:-2.23555797007;NKX6-1,2:-2.50279333952;CDX1,2,4:-2.7743088936 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
Revision as of 17:49, 14 March 2012
| Name: | Renal Glomerular Endothelial Cells, donor4 |
|---|---|
| Species: | |
| Library ID: | {{{library_id}}} |
| Sample type: | {{{sample_category}}} |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000153 human renal glomerular endothelial cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000066 (epithelial cell)
0000115 (endothelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000222 (mesodermal cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
0000666 (fenestrated cell)
0002078 (meso-epithelial cell)
0002188 (glomerular endothelial cell)
0002321 (embryonic cell)
0002371 (somatic cell)
UBERON: Anatomy
0000025 (tube)
0000058 (duct)
0000061 (anatomical structure)
0000062 (organ)
0000064 (organ part)
0000074 (renal glomerulus)
0000080 (mesonephros)
0000083 (mesonephric tubule)
0000119 (cell layer)
0000464 (anatomical space)
0000465 (material anatomical entity)
0000466 (immaterial anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000477 (anatomical cluster)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000483 (epithelium)
0000489 (cavitated compound organ)
0000916 (abdomen)
0000922 (embryo)
0000923 (germ layer)
0000926 (mesoderm)
0001008 (renal system)
0001062 (anatomical entity)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0001230 (glomerular capsule)
0001285 (nephron)
0001851 (cortex)
0002050 (embryonic structure)
0002100 (trunk)
0002113 (kidney)
0002120 (pronephros)
0002417 (abdominal segment of trunk)
0002532 (epiblast (generic))
0002553 (anatomical cavity)
0003060 (pronephric duct)
0003064 (intermediate mesoderm)
0003074 (mesonephric duct)
0003081 (lateral plate mesoderm)
0003103 (compound organ)
0003104 (mesenchyme)
0003220 (metanephric mesenchyme)
0003886 (body cavity precursor)
0003887 (intraembryonic coelom)
0003914 (epithelial tube)
0003918 (kidney mesenchyme)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0004198 (comma-shaped body)
0004199 (S-shaped body)
0004208 (nephrogenic mesenchyme)
0004209 (renal vesicle)
0004819 (kidney epithelium)
0004875 (nephrogenic cord)
0004876 (urogenital ridge)
0005095 (kidney rudiment)
0005103 (mesonephric epithelium)
0005172 (abdomen element)
0005173 (abdominal segment element)
0005177 (trunk region element)
0005256 (trunk mesenchyme)
0005291 (embryonic tissue)
0005423 (developing anatomical structure)
0005721 (pronephric mesoderm)
0005749 (glomerular tuft)
0005754 (rostral part of nephrogenic cord)
0006553 (renal duct)
0006554 (urinary system structure)
0006555 (excretory tube)
0007684 (uriniferous tubule)
0007687 (kidney field)
0009142 (entire embryonic mesenchyme)
0009201 (nephric duct)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
