FFCP PHASE1:Hg19::chr15:77906899..77906910,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84894|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=21205|TSSclassifier=N|UniProt=Q96FE5|association_with_transcript=482bp_to_AK027500_5end|description=CAGE_peak_21_at_LINGO1_5end|id=chr15:77906899..77906910,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000047;2.02e-11;2|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:171!1.64e-07!10;DOID:3095!1.65e-07!22;DOID:2994!1.65e-07!22|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001950!4.74e-51!20;UBERON:0002619!5.00e-51!22;UBERON:0001049!8.40e-47!57;UBERON:0005068!8.40e-47!57;UBERON:0006241!8.40e-47!57;UBERON:0007135!8.40e-47!57;UBERON:0001893!7.70e-46!34;UBERON:0001869!3.97e-45!32;UBERON:0000956!1.73e-44!25;UBERON:0000203!1.73e-44!25;UBERON:0001017!2.83e-44!82;UBERON:0005743!3.64e-44!86;UBERON:0002780!5.81e-44!41;UBERON:0001890!5.81e-44!41;UBERON:0006240!5.81e-44!41;UBERON:0000073!8.96e-44!94;UBERON:0001016!8.96e-44!94;UBERON:0002791!2.75e-43!33;UBERON:0003080!9.05e-43!42;UBERON:0002616!5.33e-39!59;UBERON:0002020!2.25e-38!34;UBERON:0003528!2.25e-38!34;UBERON:0002346!2.90e-37!90;UBERON:0000955!7.16e-37!69;UBERON:0006238!7.16e-37!69;UBERON:0003075!2.26e-32!86;UBERON:0007284!2.26e-32!86;UBERON:0003056!1.09e-29!61;UBERON:0000924!8.14e-25!173;UBERON:0006601!8.14e-25!173;UBERON:0007023!1.92e-23!115;UBERON:0004121!2.09e-21!169;UBERON:0000033!5.48e-20!123;UBERON:0000200!8.31e-19!6;UBERON:0000153!1.15e-18!129;UBERON:0007811!1.15e-18!129;UBERON:0002021!2.59e-16!5;UBERON:0001872!6.21e-16!5;UBERON:0001871!2.67e-14!7;UBERON:0002771!3.91e-10!3;UBERON:0000025!1.09e-09!194;UBERON:0001870!1.76e-07!2|ontology_enrichment_uberon_v019=UBERON:0001950;8.07e-34;20!UBERON:0002619;6.84e-31;22!UBERON:0000956;2.43e-27;25!UBERON:0000203;2.43e-27;25!UBERON:0001871;4.10e-26;6!UBERON:0002791;1.84e-20;32!UBERON:0001869;2.49e-20;32!UBERON:0001893;6.20e-19;34!UBERON:0003528;2.41e-18;34!UBERON:0002020;2.41e-18;34!UBERON:0002021;6.40e-17;5!UBERON:0002780;8.62e-12;41!UBERON:0001890;8.62e-12;41!UBERON:0002771;2.02e-11;2!UBERON:0001876;3.34e-11;2!UBERON:0001016;8.94e-11;83!UBERON:0000955;2.67e-10;68!UBERON:0000922;1.13e-09;49!UBERON:0000073;4.15e-09;53!UBERON:0002616;4.15e-09;53!UBERON:0001017;1.12e-08;75!UBERON:0002114;6.78e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0001950,9.60e-34,20;UBERON:0002619,8.01e-31,22;UBERON:0000956,2.79e-27,25;UBERON:0000203,2.79e-27,25;UBERON:0001871,4.87e-26,6;UBERON:0002791,1.64e-21,32;UBERON:0001869,1.64e-21,32;UBERON:0003528,2.76e-20,34;UBERON:0002020,2.76e-20,34;UBERON:0001893,2.76e-20,34;UBERON:0002780,6.57e-17,41;UBERON:0001890,6.57e-17,41;UBERON:0003080,6.57e-17,41;UBERON:0006240,6.57e-17,41;UBERON:0002021,6.94e-17,5;UBERON:0001017,5.56e-15,81;UBERON:0000955,1.16e-13,68;UBERON:0006238,1.16e-13,68;UBERON:0001016,1.75e-13,89;UBERON:0000073,3.80e-13,53;UBERON:0002616,3.80e-13,53;UBERON:0001049,1.88e-12,56;UBERON:0005068,1.88e-12,56;UBERON:0006241,1.88e-12,56;UBERON:0007135,1.88e-12,56;UBERON:0003056,1.93e-11,61;UBERON:0002771,2.23e-11,2;UBERON:0001876,2.73e-11,2;UBERON:0003075,1.61e-08,82;UBERON:0007284,1.61e-08,82;UBERON:0002346,4.04e-08,86;UBERON:0002114,6.34e-08,2;UBERON:0004121,6.32e-07,171;UBERON:0000924,6.32e-07,171;UBERON:0006601,6.32e-07,171|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662648841607426,0.580969714347592,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60279707715243,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,1.22429104652196,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84894 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=21205 | |||
|TSSclassifier=N | |||
|UniProt=Q96FE5 | |||
|association_with_transcript=482bp_to_AK027500_5end | |||
|description=CAGE_peak_21_at_LINGO1_5end | |||
|id=chr15:77906899..77906910,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.02e-11;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!1.64e-07!10;DOID:3095!1.65e-07!22;DOID:2994!1.65e-07!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!4.74e-51!20;UBERON:0002619!5.00e-51!22;UBERON:0001049!8.40e-47!57;UBERON:0005068!8.40e-47!57;UBERON:0006241!8.40e-47!57;UBERON:0007135!8.40e-47!57;UBERON:0001893!7.70e-46!34;UBERON:0001869!3.97e-45!32;UBERON:0000956!1.73e-44!25;UBERON:0000203!1.73e-44!25;UBERON:0001017!2.83e-44!82;UBERON:0005743!3.64e-44!86;UBERON:0002780!5.81e-44!41;UBERON:0001890!5.81e-44!41;UBERON:0006240!5.81e-44!41;UBERON:0000073!8.96e-44!94;UBERON:0001016!8.96e-44!94;UBERON:0002791!2.75e-43!33;UBERON:0003080!9.05e-43!42;UBERON:0002616!5.33e-39!59;UBERON:0002020!2.25e-38!34;UBERON:0003528!2.25e-38!34;UBERON:0002346!2.90e-37!90;UBERON:0000955!7.16e-37!69;UBERON:0006238!7.16e-37!69;UBERON:0003075!2.26e-32!86;UBERON:0007284!2.26e-32!86;UBERON:0003056!1.09e-29!61;UBERON:0000924!8.14e-25!173;UBERON:0006601!8.14e-25!173;UBERON:0007023!1.92e-23!115;UBERON:0004121!2.09e-21!169;UBERON:0000033!5.48e-20!123;UBERON:0000200!8.31e-19!6;UBERON:0000153!1.15e-18!129;UBERON:0007811!1.15e-18!129;UBERON:0002021!2.59e-16!5;UBERON:0001872!6.21e-16!5;UBERON:0001871!2.67e-14!7;UBERON:0002771!3.91e-10!3;UBERON:0000025!1.09e-09!194;UBERON:0001870!1.76e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;8.07e-34;20!UBERON:0002619;6.84e-31;22!UBERON:0000956;2.43e-27;25!UBERON:0000203;2.43e-27;25!UBERON:0001871;4.10e-26;6!UBERON:0002791;1.84e-20;32!UBERON:0001869;2.49e-20;32!UBERON:0001893;6.20e-19;34!UBERON:0003528;2.41e-18;34!UBERON:0002020;2.41e-18;34!UBERON:0002021;6.40e-17;5!UBERON:0002780;8.62e-12;41!UBERON:0001890;8.62e-12;41!UBERON:0002771;2.02e-11;2!UBERON:0001876;3.34e-11;2!UBERON:0001016;8.94e-11;83!UBERON:0000955;2.67e-10;68!UBERON:0000922;1.13e-09;49!UBERON:0000073;4.15e-09;53!UBERON:0002616;4.15e-09;53!UBERON:0001017;1.12e-08;75!UBERON:0002114;6.78e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,9.60e-34,20;UBERON:0002619,8.01e-31,22;UBERON:0000956,2.79e-27,25;UBERON:0000203,2.79e-27,25;UBERON:0001871,4.87e-26,6;UBERON:0002791,1.64e-21,32;UBERON:0001869,1.64e-21,32;UBERON:0003528,2.76e-20,34;UBERON:0002020,2.76e-20,34;UBERON:0001893,2.76e-20,34;UBERON:0002780,6.57e-17,41;UBERON:0001890,6.57e-17,41;UBERON:0003080,6.57e-17,41;UBERON:0006240,6.57e-17,41;UBERON:0002021,6.94e-17,5;UBERON:0001017,5.56e-15,81;UBERON:0000955,1.16e-13,68;UBERON:0006238,1.16e-13,68;UBERON:0001016,1.75e-13,89;UBERON:0000073,3.80e-13,53;UBERON:0002616,3.80e-13,53;UBERON:0001049,1.88e-12,56;UBERON:0005068,1.88e-12,56;UBERON:0006241,1.88e-12,56;UBERON:0007135,1.88e-12,56;UBERON:0003056,1.93e-11,61;UBERON:0002771,2.23e-11,2;UBERON:0001876,2.73e-11,2;UBERON:0003075,1.61e-08,82;UBERON:0007284,1.61e-08,82;UBERON:0002346,4.04e-08,86;UBERON:0002114,6.34e-08,2;UBERON:0004121,6.32e-07,171;UBERON:0000924,6.32e-07,171;UBERON:0006601,6.32e-07,171 | |||
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|short_description=p21@LINGO1 | |||
}} |
Revision as of 08:22, 11 September 2013
Short description: | p21@LINGO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_21_at_LINGO1_5end |
Coexpression cluster: | NA |
Association with transcript: | 482bp_to_AK027500_5end |
EntrezGene: | LINGO1 |
HGNC: | 21205 |
UniProt: | Q96FE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 9.60e-34 | 20 |
regional part of cerebral cortex | 8.01e-31 | 22 |
cerebral cortex | 2.79e-27 | 25 |
pallium | 2.79e-27 | 25 |
temporal lobe | 4.87e-26 | 6 |
regional part of telencephalon | 1.64e-21 | 32 |
cerebral hemisphere | 1.64e-21 | 32 |
brain grey matter | 2.76e-20 | 34 |
gray matter | 2.76e-20 | 34 |
telencephalon | 2.76e-20 | 34 |
regional part of forebrain | 6.57e-17 | 41 |
forebrain | 6.57e-17 | 41 |
anterior neural tube | 6.57e-17 | 41 |
future forebrain | 6.57e-17 | 41 |
occipital lobe | 6.94e-17 | 5 |
central nervous system | 5.56e-15 | 81 |
brain | 1.16e-13 | 68 |
future brain | 1.16e-13 | 68 |
nervous system | 1.75e-13 | 89 |
regional part of nervous system | 3.80e-13 | 53 |
regional part of brain | 3.80e-13 | 53 |
neural tube | 1.88e-12 | 56 |
neural rod | 1.88e-12 | 56 |
future spinal cord | 1.88e-12 | 56 |
neural keel | 1.88e-12 | 56 |
pre-chordal neural plate | 1.93e-11 | 61 |
middle temporal gyrus | 2.23e-11 | 2 |
amygdala | 2.73e-11 | 2 |
neural plate | 1.61e-08 | 82 |
presumptive neural plate | 1.61e-08 | 82 |
neurectoderm | 4.04e-08 | 86 |
duodenum | 6.34e-08 | 2 |
ectoderm-derived structure | 6.32e-07 | 171 |
ectoderm | 6.32e-07 | 171 |
presumptive ectoderm | 6.32e-07 | 171 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.