FFCP PHASE1:Mm9::chr3:151872996..151873087,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67035|HGNC=|MCL_coexpression_id=0|UniProt=Q9D832|association_with_transcript=0bp_to_ENSMUST00000144950,ENSMUST00000153355_5end|description=CAGE_peak_4_at_Dnajb4_5end|id=chr3:151872996..151873087,-|ontology_enrichment_celltype=CL:0000117!5.42e-08!23;CL:0000337!5.42e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.99e-08,23;CL:0000337,4.99e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!7.97e-17!63;UBERON:0001017!4.49e-16!73;UBERON:0005743!4.49e-16!73;UBERON:0001049!5.34e-16!52;UBERON:0005068!5.34e-16!52;UBERON:0006241!5.34e-16!52;UBERON:0007135!5.34e-16!52;UBERON:0000955!2.26e-15!50;UBERON:0006238!2.26e-15!50;UBERON:0000073!3.10e-15!75;UBERON:0001016!3.10e-15!75;UBERON:0002616!7.84e-15!49;UBERON:0002346!3.88e-14!71;UBERON:0003075!3.88e-14!71;UBERON:0007284!3.88e-14!71;UBERON:0004121!5.50e-14!102;UBERON:0000924!5.50e-14!102;UBERON:0006601!5.50e-14!102;UBERON:0002020!7.61e-13!34;UBERON:0003056!6.20e-12!49;UBERON:0004111!1.74e-11!122;UBERON:0003080!3.22e-11!40;UBERON:0002780!1.06e-10!39;UBERON:0001890!1.06e-10!39;UBERON:0006240!1.06e-10!39;UBERON:0002791!1.76e-10!29;UBERON:0003528!1.76e-10!29;UBERON:0001893!1.76e-10!29;UBERON:0000025!2.15e-10!114;UBERON:0007811!2.75e-07!86;UBERON:0002021!2.84e-07!10;UBERON:0000411!2.84e-07!10;UBERON:0001950!2.84e-07!10;UBERON:0000956!9.49e-07!21;UBERON:0001869!9.49e-07!21;UBERON:0000203!9.49e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.71e-17,54;UBERON:0001049,5.65e-16,52;UBERON:0005068,5.65e-16,52;UBERON:0006241,5.65e-16,52;UBERON:0007135,5.65e-16,52;UBERON:0001017,5.99e-16,73;UBERON:0002346,1.47e-15,64;UBERON:0003075,1.47e-15,64;UBERON:0007284,1.47e-15,64;UBERON:0001016,4.97e-15,75;UBERON:0004121,1.23e-14,95;UBERON:0000924,1.23e-14,95;UBERON:0006601,1.23e-14,95;UBERON:0010371,6.52e-14,73;UBERON:0000955,1.53e-13,47;UBERON:0006238,1.53e-13,47;UBERON:0002616,5.12e-13,46;UBERON:0002020,6.60e-13,34;UBERON:0010314,4.27e-12,92;UBERON:0003056,6.70e-12,49;UBERON:0004111,1.79e-11,122;UBERON:0003080,3.55e-11,40;UBERON:0002780,1.18e-10,39;UBERON:0001890,1.18e-10,39;UBERON:0006240,1.18e-10,39;UBERON:0003528,1.57e-10,29;UBERON:0002791,1.57e-10,29;UBERON:0001893,1.57e-10,29;UBERON:0000025,2.24e-10,114;UBERON:0002021,2.64e-07,10;UBERON:0000411,2.64e-07,10;UBERON:0001950,2.64e-07,10;UBERON:0000956,8.88e-07,21;UBERON:0001869,8.88e-07,21;UBERON:0000203,8.88e-07,21|phase1_expression=4.48416771893423,0.348975407639361,1.36499771816861,1.81478526784098,1.00179145989269,0.33575854382378,1.16806320297763,1.29123323441576,1.68946466582,0.936258105287974,0.68487187290202,0.8774937489487,0.684802919724823,0.961624426608971,1.66554880907831,1.21485160433896,0,1.41957974411207,1.50825876966313,1.69755860719212,62.9320347117916,0.794327609607082,1.04479915655574,0.95995453676044,0.91763712426868,0,2.15380998079537,0.430942465371778,0.570070258369122,0.756090389279792,1.33038306393183,1.90509202037889,2.46025915033828,0,3.46621943701529,0.831173226792462,1.63335485009895,0.418531630736908,1.5626706890476,0,1.17646297606203,0.683045484958446,0.971020706062307,1.25896817975577,1.31790010585369,0.734187008646726,3.12956537739216,2.18025156380447,1.31811709640683,3.88859798148567,2.09979632438044,1.43752564364972,2.01339127269284,0.725362142011344,1.00828139742739,0,1.14613375975503,0.515672092277442,5.05791152148994,6.87688273053643,5.70448263155561,0,0,1.3498495759221,0.988866362566974,1.4209602298922,0.898800331555214,1.53687322128622,3.00699875694585,2.56511282830212,2.94454945891935,7.7125765789027,9.49734726091938,3.30725157880376,2.30029130443767,1.83843757322004,20.9220173898839,25.5374676170375,23.962619187974,5.93488294785872,6.22115976496386,4.16730696445408,20.1011759280994,24.7615548413939,25.9757021220577,11.7851434189467,14.9490264839058,8.01517617048792,0.908714319998209,2.19157524309678,2.89864488701678,2.58127163094416,3.39985666853875,5.39703191637817,7.14754059192436,4.48026887097336,12.2186645514624,0.170430322578058,0.519572009205738,0,2.95771181531029,3.84979432242953,0,0,0.432982082022428,0.760079596425296,1.01104889002957,10.7332846935916,3.88406825470758,4.75014845007439,1.04091196059682,1.82679286987285,1.38369298353635,1.95939432718409,1.64624189989987,3.89566433121994,1.48316980640624,11.423349196673,4.42305275974937,1.13236794963186,1.98757366614354,4.363877278217,1.86391761218122,14.6390398505774,11.51956887474,1.02182822083437,1.07833612055328,0.599902730993408,2.66847476853436,19.6225737620318,26.992535566299,7.91622418311046,24.1615805067264,24.8043993610421,23.0644729461112,21.0913641988085,2.24046600470696,3.6078021476927,10.6143558542143,6.94458124425364,1.30120442962704,3.44853156650209,1.98068342785884,3.31550599238573,3.81004395247436,3.97152532883034,4.12287588062807,8.2785078636485,0.646703978798527,1.70195472151037,2.81521798662318,1.31517439456545,1.66828349535359,2.43776516565517,2.05782136407943,2.38841120182192,2.80885274925294,1.80143534980301,1.70498099637356,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| ||
|EntrezGene=67035 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q9D832 | |||
|association_with_transcript=0bp_to_ENSMUST00000144950,ENSMUST00000153355_5end | |||
|description=CAGE_peak_4_at_Dnajb4_5end | |||
|id=chr3:151872996..151873087,- | |||
|ontology_enrichment_celltype=CL:0000117!5.42e-08!23;CL:0000337!5.42e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.99e-08,23;CL:0000337,4.99e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.97e-17!63;UBERON:0001017!4.49e-16!73;UBERON:0005743!4.49e-16!73;UBERON:0001049!5.34e-16!52;UBERON:0005068!5.34e-16!52;UBERON:0006241!5.34e-16!52;UBERON:0007135!5.34e-16!52;UBERON:0000955!2.26e-15!50;UBERON:0006238!2.26e-15!50;UBERON:0000073!3.10e-15!75;UBERON:0001016!3.10e-15!75;UBERON:0002616!7.84e-15!49;UBERON:0002346!3.88e-14!71;UBERON:0003075!3.88e-14!71;UBERON:0007284!3.88e-14!71;UBERON:0004121!5.50e-14!102;UBERON:0000924!5.50e-14!102;UBERON:0006601!5.50e-14!102;UBERON:0002020!7.61e-13!34;UBERON:0003056!6.20e-12!49;UBERON:0004111!1.74e-11!122;UBERON:0003080!3.22e-11!40;UBERON:0002780!1.06e-10!39;UBERON:0001890!1.06e-10!39;UBERON:0006240!1.06e-10!39;UBERON:0002791!1.76e-10!29;UBERON:0003528!1.76e-10!29;UBERON:0001893!1.76e-10!29;UBERON:0000025!2.15e-10!114;UBERON:0007811!2.75e-07!86;UBERON:0002021!2.84e-07!10;UBERON:0000411!2.84e-07!10;UBERON:0001950!2.84e-07!10;UBERON:0000956!9.49e-07!21;UBERON:0001869!9.49e-07!21;UBERON:0000203!9.49e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.71e-17,54;UBERON:0001049,5.65e-16,52;UBERON:0005068,5.65e-16,52;UBERON:0006241,5.65e-16,52;UBERON:0007135,5.65e-16,52;UBERON:0001017,5.99e-16,73;UBERON:0002346,1.47e-15,64;UBERON:0003075,1.47e-15,64;UBERON:0007284,1.47e-15,64;UBERON:0001016,4.97e-15,75;UBERON:0004121,1.23e-14,95;UBERON:0000924,1.23e-14,95;UBERON:0006601,1.23e-14,95;UBERON:0010371,6.52e-14,73;UBERON:0000955,1.53e-13,47;UBERON:0006238,1.53e-13,47;UBERON:0002616,5.12e-13,46;UBERON:0002020,6.60e-13,34;UBERON:0010314,4.27e-12,92;UBERON:0003056,6.70e-12,49;UBERON:0004111,1.79e-11,122;UBERON:0003080,3.55e-11,40;UBERON:0002780,1.18e-10,39;UBERON:0001890,1.18e-10,39;UBERON:0006240,1.18e-10,39;UBERON:0003528,1.57e-10,29;UBERON:0002791,1.57e-10,29;UBERON:0001893,1.57e-10,29;UBERON:0000025,2.24e-10,114;UBERON:0002021,2.64e-07,10;UBERON:0000411,2.64e-07,10;UBERON:0001950,2.64e-07,10;UBERON:0000956,8.88e-07,21;UBERON:0001869,8.88e-07,21;UBERON:0000203,8.88e-07,21 | |||
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| |||
|short_description=p4@Dnajb4 | |||
}} |
Revision as of 01:50, 14 September 2013
Short description: | p4@Dnajb4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Dnajb4_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000144950, ENSMUST00000153355_5end |
EntrezGene: | Dnajb4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.99e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.99e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.71e-17 | 54 |
neural tube | 5.65e-16 | 52 |
neural rod | 5.65e-16 | 52 |
future spinal cord | 5.65e-16 | 52 |
neural keel | 5.65e-16 | 52 |
central nervous system | 5.99e-16 | 73 |
neurectoderm | 1.47e-15 | 64 |
neural plate | 1.47e-15 | 64 |
presumptive neural plate | 1.47e-15 | 64 |
nervous system | 4.97e-15 | 75 |
ectoderm-derived structure | 1.23e-14 | 95 |
ectoderm | 1.23e-14 | 95 |
presumptive ectoderm | 1.23e-14 | 95 |
ecto-epithelium | 6.52e-14 | 73 |
brain | 1.53e-13 | 47 |
future brain | 1.53e-13 | 47 |
regional part of brain | 5.12e-13 | 46 |
gray matter | 6.60e-13 | 34 |
structure with developmental contribution from neural crest | 4.27e-12 | 92 |
pre-chordal neural plate | 6.70e-12 | 49 |
anatomical conduit | 1.79e-11 | 122 |
anterior neural tube | 3.55e-11 | 40 |
regional part of forebrain | 1.18e-10 | 39 |
forebrain | 1.18e-10 | 39 |
future forebrain | 1.18e-10 | 39 |
brain grey matter | 1.57e-10 | 29 |
regional part of telencephalon | 1.57e-10 | 29 |
telencephalon | 1.57e-10 | 29 |
tube | 2.24e-10 | 114 |
occipital lobe | 2.64e-07 | 10 |
visual cortex | 2.64e-07 | 10 |
neocortex | 2.64e-07 | 10 |
cerebral cortex | 8.88e-07 | 21 |
cerebral hemisphere | 8.88e-07 | 21 |
pallium | 8.88e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.