FFCP PHASE1:Mm9::chr5:100468843..100468907,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=50926|HGNC=|MCL_coexpression_id=22|UniProt=D3YTQ3|association_with_transcript=-160bp_to_ENSMUST00000086900_5end|description=CAGE_peak_2_at_Hnrpdl_5end|id=chr5:100468843..100468907,-|ontology_enrichment_celltype=CL:0000540!2.66e-15!33;CL:0000047!2.66e-15!33;CL:0000031!2.66e-15!33;CL:0000404!2.66e-15!33;CL:0000117!2.62e-12!23;CL:0000337!2.62e-12!23;CL:0000393!1.23e-09!39;CL:0000211!1.23e-09!39;CL:0000221!9.01e-08!44;CL:0000133!9.01e-08!44;CL:0002319!1.25e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,2.65e-15,33;CL:0000047,2.65e-15,33;CL:0000031,2.65e-15,33;CL:0000404,2.65e-15,33;CL:0000117,2.61e-12,23;CL:0000337,2.61e-12,23;CL:0000393,1.11e-09,39;CL:0000211,1.11e-09,39;CL:0000221,1.01e-07,44;CL:0000133,1.01e-07,44;CL:0002319,1.40e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.93e-16!73;UBERON:0005743!2.93e-16!73;UBERON:0002346!1.91e-15!71;UBERON:0003075!1.91e-15!71;UBERON:0007284!1.91e-15!71;UBERON:0000073!2.69e-15!75;UBERON:0001016!2.69e-15!75;UBERON:0003056!2.75e-15!49;UBERON:0002020!1.00e-14!34;UBERON:0000033!3.88e-14!63;UBERON:0004121!1.56e-13!102;UBERON:0000924!1.56e-13!102;UBERON:0006601!1.56e-13!102;UBERON:0001049!5.44e-13!52;UBERON:0005068!5.44e-13!52;UBERON:0006241!5.44e-13!52;UBERON:0007135!5.44e-13!52;UBERON:0002791!3.90e-12!29;UBERON:0003528!3.90e-12!29;UBERON:0001893!3.90e-12!29;UBERON:0003080!8.11e-12!40;UBERON:0000153!1.27e-11!94;UBERON:0002780!1.59e-11!39;UBERON:0001890!1.59e-11!39;UBERON:0006240!1.59e-11!39;UBERON:0000955!1.68e-11!50;UBERON:0006238!1.68e-11!50;UBERON:0002616!4.57e-11!49;UBERON:0007811!1.40e-10!86;UBERON:0000956!2.01e-08!21;UBERON:0001869!2.01e-08!21;UBERON:0000203!2.01e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.45e-17,64;UBERON:0003075,1.45e-17,64;UBERON:0007284,1.45e-17,64;UBERON:0001017,3.37e-16,73;UBERON:0001016,3.07e-15,75;UBERON:0003056,3.22e-15,49;UBERON:0010371,3.88e-15,73;UBERON:0004121,7.52e-15,95;UBERON:0000924,7.52e-15,95;UBERON:0006601,7.52e-15,95;UBERON:0002020,1.20e-14,34;UBERON:0000073,2.07e-13,54;UBERON:0001049,6.26e-13,52;UBERON:0005068,6.26e-13,52;UBERON:0006241,6.26e-13,52;UBERON:0007135,6.26e-13,52;UBERON:0003528,4.65e-12,29;UBERON:0002791,4.65e-12,29;UBERON:0001893,4.65e-12,29;UBERON:0003080,9.43e-12,40;UBERON:0002780,1.84e-11,39;UBERON:0001890,1.84e-11,39;UBERON:0006240,1.84e-11,39;UBERON:0000955,5.30e-11,47;UBERON:0006238,5.30e-11,47;UBERON:0002616,1.43e-10,46;UBERON:0010314,5.34e-10,92;UBERON:0000956,2.37e-08,21;UBERON:0001869,2.37e-08,21;UBERON:0000203,2.37e-08,21|phase1_expression=10.890121603126,1.04692622291808,2.27499619694768,3.93203474698879,3.50627010962443,3.52546471014969,2.80335168714631,6.45616617207881,4.36445038670167,7.95819389494778,1.36974374580404,2.39316476986009,4.79362043807376,5.33264454755884,7.32841475994458,5.4668322195253,3.49780939064073,9.46386496074713,10.2835825204304,9.76096199135469,4.84746753861098,7.74469419366905,3.91799683708403,1.75991665072747,1.83527424853736,2.29692785646008,1.29228598847722,3.23206849028834,2.85035129184561,2.01624103807945,2.21730510655305,7.62036808151557,11.0711661765223,15.8481681015439,6.35473563452804,5.31950865147176,6.73758875665818,3.34825304589526,1.5626706890476,2.61761871986899,0.588231488031014,3.41522742479223,1.45653105909346,2.39203954153597,2.83855407414641,2.9367480345869,2.34717403304412,3.2703773457067,0.878744730937887,0.777719596297134,2.09979632438044,1.43752564364972,8.89247812106003,4.35217285206807,1.34437519656986,0.257259436035947,0.573066879877513,0,38.0354946416044,36.5003775697703,35.494558596346,1.69422266034566,1.77858959222228,1.3498495759221,1.97773272513395,2.1314403448383,2.69640099466564,1.53687322128622,35.6692266341163,37.8016627328734,28.604194743788,14.568200204594,12.589506834242,38.7070925519255,32.9708420302733,48.7185956903311,5.50579404996943,11.6195477657521,9.83081812839958,44.4456789650753,37.8758844513976,40.1103295328705,12.0048689570594,7.31591393041184,12.835052813252,20.3293723976831,15.6608848879013,28.3327157654457,3.18050011999373,3.09843396437821,2.31891590961342,0.860423876981386,0,1.07940638327563,0.649776417447669,0,2.10666630197628,2.21559419351475,1.03914401841148,0.70667914902068,8.45060518660083,1.28326477414318,0,0,0.649473123033642,0.760079596425296,1.51657333504435,2.51204535381932,1.03575153458869,3.71105347662062,6.59244241711316,5.1759131313064,2.99800146432876,4.97384713823654,5.52666923537813,2.63899841792318,1.73036477414062,1.3013942122792,3.5384422077995,5.50007289821191,3.09178125844551,4.363877278217,1.86391761218122,9.07620470735796,8.16842156572475,2.04365644166873,12.4607729486157,7.7987355029143,10.1656181658452,10.3355541189328,12.8100168789215,49.6334690845814,12.8629996942285,12.0186264945255,8.10373373782284,10.058958310201,10.2857757488819,4.85187185379363,7.58168275301024,4.41927897361595,20.6891504310699,16.3230494147766,15.8454674228707,11.7549757911858,35.6511255552958,22.2917873295639,19.58366043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| ||
|EntrezGene=50926 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=D3YTQ3 | |||
|association_with_transcript=-160bp_to_ENSMUST00000086900_5end | |||
|description=CAGE_peak_2_at_Hnrpdl_5end | |||
|id=chr5:100468843..100468907,- | |||
|ontology_enrichment_celltype=CL:0000540!2.66e-15!33;CL:0000047!2.66e-15!33;CL:0000031!2.66e-15!33;CL:0000404!2.66e-15!33;CL:0000117!2.62e-12!23;CL:0000337!2.62e-12!23;CL:0000393!1.23e-09!39;CL:0000211!1.23e-09!39;CL:0000221!9.01e-08!44;CL:0000133!9.01e-08!44;CL:0002319!1.25e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.65e-15,33;CL:0000047,2.65e-15,33;CL:0000031,2.65e-15,33;CL:0000404,2.65e-15,33;CL:0000117,2.61e-12,23;CL:0000337,2.61e-12,23;CL:0000393,1.11e-09,39;CL:0000211,1.11e-09,39;CL:0000221,1.01e-07,44;CL:0000133,1.01e-07,44;CL:0002319,1.40e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.93e-16!73;UBERON:0005743!2.93e-16!73;UBERON:0002346!1.91e-15!71;UBERON:0003075!1.91e-15!71;UBERON:0007284!1.91e-15!71;UBERON:0000073!2.69e-15!75;UBERON:0001016!2.69e-15!75;UBERON:0003056!2.75e-15!49;UBERON:0002020!1.00e-14!34;UBERON:0000033!3.88e-14!63;UBERON:0004121!1.56e-13!102;UBERON:0000924!1.56e-13!102;UBERON:0006601!1.56e-13!102;UBERON:0001049!5.44e-13!52;UBERON:0005068!5.44e-13!52;UBERON:0006241!5.44e-13!52;UBERON:0007135!5.44e-13!52;UBERON:0002791!3.90e-12!29;UBERON:0003528!3.90e-12!29;UBERON:0001893!3.90e-12!29;UBERON:0003080!8.11e-12!40;UBERON:0000153!1.27e-11!94;UBERON:0002780!1.59e-11!39;UBERON:0001890!1.59e-11!39;UBERON:0006240!1.59e-11!39;UBERON:0000955!1.68e-11!50;UBERON:0006238!1.68e-11!50;UBERON:0002616!4.57e-11!49;UBERON:0007811!1.40e-10!86;UBERON:0000956!2.01e-08!21;UBERON:0001869!2.01e-08!21;UBERON:0000203!2.01e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.45e-17,64;UBERON:0003075,1.45e-17,64;UBERON:0007284,1.45e-17,64;UBERON:0001017,3.37e-16,73;UBERON:0001016,3.07e-15,75;UBERON:0003056,3.22e-15,49;UBERON:0010371,3.88e-15,73;UBERON:0004121,7.52e-15,95;UBERON:0000924,7.52e-15,95;UBERON:0006601,7.52e-15,95;UBERON:0002020,1.20e-14,34;UBERON:0000073,2.07e-13,54;UBERON:0001049,6.26e-13,52;UBERON:0005068,6.26e-13,52;UBERON:0006241,6.26e-13,52;UBERON:0007135,6.26e-13,52;UBERON:0003528,4.65e-12,29;UBERON:0002791,4.65e-12,29;UBERON:0001893,4.65e-12,29;UBERON:0003080,9.43e-12,40;UBERON:0002780,1.84e-11,39;UBERON:0001890,1.84e-11,39;UBERON:0006240,1.84e-11,39;UBERON:0000955,5.30e-11,47;UBERON:0006238,5.30e-11,47;UBERON:0002616,1.43e-10,46;UBERON:0010314,5.34e-10,92;UBERON:0000956,2.37e-08,21;UBERON:0001869,2.37e-08,21;UBERON:0000203,2.37e-08,21 | |||
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| |||
|short_description=p2@Hnrpdl | |||
}} |
Revision as of 05:42, 14 September 2013
Short description: | p2@Hnrpdl |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Hnrpdl_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -160bp_to_ENSMUST00000086900_5end |
EntrezGene: | Hnrpdl |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.65e-15 | 33 |
neuronal stem cell | 2.65e-15 | 33 |
neuroblast | 2.65e-15 | 33 |
electrically signaling cell | 2.65e-15 | 33 |
CNS neuron (sensu Vertebrata) | 2.61e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.61e-12 | 23 |
electrically responsive cell | 1.11e-09 | 39 |
electrically active cell | 1.11e-09 | 39 |
ectodermal cell | 1.01e-07 | 44 |
neurectodermal cell | 1.01e-07 | 44 |
neural cell | 1.40e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.45e-17 | 64 |
neural plate | 1.45e-17 | 64 |
presumptive neural plate | 1.45e-17 | 64 |
central nervous system | 3.37e-16 | 73 |
nervous system | 3.07e-15 | 75 |
pre-chordal neural plate | 3.22e-15 | 49 |
ecto-epithelium | 3.88e-15 | 73 |
ectoderm-derived structure | 7.52e-15 | 95 |
ectoderm | 7.52e-15 | 95 |
presumptive ectoderm | 7.52e-15 | 95 |
gray matter | 1.20e-14 | 34 |
regional part of nervous system | 2.07e-13 | 54 |
neural tube | 6.26e-13 | 52 |
neural rod | 6.26e-13 | 52 |
future spinal cord | 6.26e-13 | 52 |
neural keel | 6.26e-13 | 52 |
brain grey matter | 4.65e-12 | 29 |
regional part of telencephalon | 4.65e-12 | 29 |
telencephalon | 4.65e-12 | 29 |
anterior neural tube | 9.43e-12 | 40 |
regional part of forebrain | 1.84e-11 | 39 |
forebrain | 1.84e-11 | 39 |
future forebrain | 1.84e-11 | 39 |
brain | 5.30e-11 | 47 |
future brain | 5.30e-11 | 47 |
regional part of brain | 1.43e-10 | 46 |
structure with developmental contribution from neural crest | 5.34e-10 | 92 |
cerebral cortex | 2.37e-08 | 21 |
cerebral hemisphere | 2.37e-08 | 21 |
pallium | 2.37e-08 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.