FFCP PHASE1:Mm9::chrX:108810678..108810736,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=245596|HGNC=|MCL_coexpression_id=361|UniProt=Q14B70|association_with_transcript=0bp_to_ENSMUST00000038472,ENSMUST00000113422,NM_001080549,uc009udb.1,uc009udc.1_5end|description=CAGE_peak_1_at_Hdx_5end|id=chrX:108810678..108810736,-|ontology_enrichment_celltype=CL:0000540!8.22e-08!33;CL:0000047!8.22e-08!33;CL:0000031!8.22e-08!33;CL:0000404!8.22e-08!33;CL:0000393!1.24e-07!39;CL:0000211!1.24e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,4.80e-08,33;CL:0000047,4.80e-08,33;CL:0000031,4.80e-08,33;CL:0000404,4.80e-08,33;CL:0000393,7.32e-08,39;CL:0000211,7.32e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.95e-18!71;UBERON:0003075!1.95e-18!71;UBERON:0007284!1.95e-18!71;UBERON:0001017!3.94e-17!73;UBERON:0005743!3.94e-17!73;UBERON:0000033!5.48e-17!63;UBERON:0000073!7.28e-17!75;UBERON:0001016!7.28e-17!75;UBERON:0004121!1.74e-16!102;UBERON:0000924!1.74e-16!102;UBERON:0006601!1.74e-16!102;UBERON:0003056!7.20e-15!49;UBERON:0000955!2.36e-14!50;UBERON:0006238!2.36e-14!50;UBERON:0002616!9.41e-14!49;UBERON:0001049!1.12e-13!52;UBERON:0005068!1.12e-13!52;UBERON:0006241!1.12e-13!52;UBERON:0007135!1.12e-13!52;UBERON:0003080!2.37e-11!40;UBERON:0002780!9.35e-11!39;UBERON:0001890!9.35e-11!39;UBERON:0006240!9.35e-11!39;UBERON:0002020!1.49e-09!34;UBERON:0002791!7.46e-09!29;UBERON:0003528!7.46e-09!29;UBERON:0001893!7.46e-09!29;UBERON:0000025!2.36e-08!114;UBERON:0002021!8.89e-08!10;UBERON:0000411!8.89e-08!10;UBERON:0001950!8.89e-08!10;UBERON:0000153!2.10e-07!94;UBERON:0004111!4.67e-07!122;UBERON:0000956!5.34e-07!21;UBERON:0001869!5.34e-07!21;UBERON:0000203!5.34e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.85e-19,64;UBERON:0003075,9.85e-19,64;UBERON:0007284,9.85e-19,64;UBERON:0001017,3.40e-17,73;UBERON:0010314,4.66e-17,92;UBERON:0001016,6.30e-17,75;UBERON:0004121,9.64e-16,95;UBERON:0000924,9.64e-16,95;UBERON:0006601,9.64e-16,95;UBERON:0003056,7.56e-15,49;UBERON:0000073,1.80e-14,54;UBERON:0010371,2.11e-14,73;UBERON:0001049,1.47e-13,52;UBERON:0005068,1.47e-13,52;UBERON:0006241,1.47e-13,52;UBERON:0007135,1.47e-13,52;UBERON:0000955,1.05e-12,47;UBERON:0006238,1.05e-12,47;UBERON:0002616,4.12e-12,46;UBERON:0003080,3.13e-11,40;UBERON:0002780,1.27e-10,39;UBERON:0001890,1.27e-10,39;UBERON:0006240,1.27e-10,39;UBERON:0002020,1.36e-09,34;UBERON:0003528,7.32e-09,29;UBERON:0002791,7.32e-09,29;UBERON:0001893,7.32e-09,29;UBERON:0002021,5.20e-08,10;UBERON:0000411,5.20e-08,10;UBERON:0001950,5.20e-08,10;UBERON:0000025,9.41e-08,114;UBERON:0000956,6.16e-07,21;UBERON:0001869,6.16e-07,21;UBERON:0000203,6.16e-07,21|phase1_expression=3.04282809499109,0,0,0,0,0,0,0.387369970324729,0,0.468129052643987,0,0.0797721589953364,0,0,0,0.202475267389826,0,0,0,0,3.74190476664707,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,5.5394599909254,4.8660926985367,4.40512205188036,0,0.872100625521786,0.439372365468944,0.58328969722285,0,0,0,0,0,1.28629718017973,1.43266719969378,1.54701627683233,1.82084814773638,5.28990979272033,2.53532561402472,0.677689064138264,0,0,0.988866362566974,0,0.599200221036809,0.384218305321555,4.14758449233911,2.56511282830212,3.36519938162211,1.71390590642282,3.09215957332259,3.67472397644862,2.49198224647415,3.67687514644008,7.70811166995721,7.02280359468532,7.83393319606842,4.48413378282659,2.47016637726506,5.2091337055676,4.18774498502071,3.37657566019008,7.02871939773326,5.59794312399969,7.26095572075425,5.21918448310842,1.81742863999642,2.87171928405785,6.37701875143691,0.860423876981386,0,0,0,0,0.421333260395256,2.89731548382698,2.07828803682295,0.70667914902068,2.25349471642689,0,0,0,0.216491041011214,0.253359865475099,0,0.45673551887624,2.07150306917737,3.85949561568544,1.56136794089522,3.04465478312141,2.99800146432876,3.01445281105245,4.11560474974967,2.26199864393416,0.247194967734374,0.578397427679647,0.884610551949874,1.7794353494215,0.662524555381181,0.969750506270444,0,18.1524094147159,10.4723353406728,0.766371165625774,2.27648736561249,1.19980546198682,1.39777249780371,13.9305294646485,10.5225138648284,7.66491547888473,12.6891753740362,10.4843337505436,14.7529511637288,6.97637431191358,4.9901288286655,1.24406970610093,1.26361379216837,4.62972082950243,8.45782879257574,4.59804208866946,7.92273371143537,5.27466862425003,6.93972291343544,8.07116437794554,6.37171727006156,5.69147415625834,6.89817577385095,9.8335161687266,5.98233822157426,2.19195732427575,3.05851974148158,3.1342694986995,2.05782136407943,5.57295947091781,0,0,0,6.00664740352955,4.69052119962192,4.50155153652537,6.8655973319711,3.93528463494808,3.70241070929708,4.18561100550734,2.68273401399619,2.80236821681207,1.97471819896177,1.31333971263276,0.972825714550269,1.46199987425332,2.85415149878366,1.20785776884335,9.2527577368216,7.30622747892919,0,0.264450566663544,5.54549451391608,7.43157349953403,4.51036114627327,3.42861991859682,2.89091456998331,3.23383564391351,0.474529061544512,1.15289268306808,2.01068167040216,2.18852119245266,1.75467678407208,0,0.432276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| ||
|EntrezGene=245596 | |||
|HGNC= | |||
|MCL_coexpression_id=361 | |||
|UniProt=Q14B70 | |||
|association_with_transcript=0bp_to_ENSMUST00000038472,ENSMUST00000113422,NM_001080549,uc009udb.1,uc009udc.1_5end | |||
|description=CAGE_peak_1_at_Hdx_5end | |||
|id=chrX:108810678..108810736,- | |||
|ontology_enrichment_celltype=CL:0000540!8.22e-08!33;CL:0000047!8.22e-08!33;CL:0000031!8.22e-08!33;CL:0000404!8.22e-08!33;CL:0000393!1.24e-07!39;CL:0000211!1.24e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.80e-08,33;CL:0000047,4.80e-08,33;CL:0000031,4.80e-08,33;CL:0000404,4.80e-08,33;CL:0000393,7.32e-08,39;CL:0000211,7.32e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.95e-18!71;UBERON:0003075!1.95e-18!71;UBERON:0007284!1.95e-18!71;UBERON:0001017!3.94e-17!73;UBERON:0005743!3.94e-17!73;UBERON:0000033!5.48e-17!63;UBERON:0000073!7.28e-17!75;UBERON:0001016!7.28e-17!75;UBERON:0004121!1.74e-16!102;UBERON:0000924!1.74e-16!102;UBERON:0006601!1.74e-16!102;UBERON:0003056!7.20e-15!49;UBERON:0000955!2.36e-14!50;UBERON:0006238!2.36e-14!50;UBERON:0002616!9.41e-14!49;UBERON:0001049!1.12e-13!52;UBERON:0005068!1.12e-13!52;UBERON:0006241!1.12e-13!52;UBERON:0007135!1.12e-13!52;UBERON:0003080!2.37e-11!40;UBERON:0002780!9.35e-11!39;UBERON:0001890!9.35e-11!39;UBERON:0006240!9.35e-11!39;UBERON:0002020!1.49e-09!34;UBERON:0002791!7.46e-09!29;UBERON:0003528!7.46e-09!29;UBERON:0001893!7.46e-09!29;UBERON:0000025!2.36e-08!114;UBERON:0002021!8.89e-08!10;UBERON:0000411!8.89e-08!10;UBERON:0001950!8.89e-08!10;UBERON:0000153!2.10e-07!94;UBERON:0004111!4.67e-07!122;UBERON:0000956!5.34e-07!21;UBERON:0001869!5.34e-07!21;UBERON:0000203!5.34e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.85e-19,64;UBERON:0003075,9.85e-19,64;UBERON:0007284,9.85e-19,64;UBERON:0001017,3.40e-17,73;UBERON:0010314,4.66e-17,92;UBERON:0001016,6.30e-17,75;UBERON:0004121,9.64e-16,95;UBERON:0000924,9.64e-16,95;UBERON:0006601,9.64e-16,95;UBERON:0003056,7.56e-15,49;UBERON:0000073,1.80e-14,54;UBERON:0010371,2.11e-14,73;UBERON:0001049,1.47e-13,52;UBERON:0005068,1.47e-13,52;UBERON:0006241,1.47e-13,52;UBERON:0007135,1.47e-13,52;UBERON:0000955,1.05e-12,47;UBERON:0006238,1.05e-12,47;UBERON:0002616,4.12e-12,46;UBERON:0003080,3.13e-11,40;UBERON:0002780,1.27e-10,39;UBERON:0001890,1.27e-10,39;UBERON:0006240,1.27e-10,39;UBERON:0002020,1.36e-09,34;UBERON:0003528,7.32e-09,29;UBERON:0002791,7.32e-09,29;UBERON:0001893,7.32e-09,29;UBERON:0002021,5.20e-08,10;UBERON:0000411,5.20e-08,10;UBERON:0001950,5.20e-08,10;UBERON:0000025,9.41e-08,114;UBERON:0000956,6.16e-07,21;UBERON:0001869,6.16e-07,21;UBERON:0000203,6.16e-07,21 | |||
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| |||
|short_description=p1@Hdx | |||
}} |
Revision as of 19:14, 14 September 2013
Short description: | p1@Hdx |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hdx_5end |
Coexpression cluster: | MCL_coexpression_mm9:361 |
Association with transcript: | 0bp_to_ENSMUST00000038472, ENSMUST00000113422, NM_001080549, uc009udb.1, uc009udc.1_5end |
EntrezGene: | Hdx |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.80e-08 | 33 |
neuronal stem cell | 4.80e-08 | 33 |
neuroblast | 4.80e-08 | 33 |
electrically signaling cell | 4.80e-08 | 33 |
electrically responsive cell | 7.32e-08 | 39 |
electrically active cell | 7.32e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.85e-19 | 64 |
neural plate | 9.85e-19 | 64 |
presumptive neural plate | 9.85e-19 | 64 |
central nervous system | 3.40e-17 | 73 |
structure with developmental contribution from neural crest | 4.66e-17 | 92 |
nervous system | 6.30e-17 | 75 |
ectoderm-derived structure | 9.64e-16 | 95 |
ectoderm | 9.64e-16 | 95 |
presumptive ectoderm | 9.64e-16 | 95 |
pre-chordal neural plate | 7.56e-15 | 49 |
regional part of nervous system | 1.80e-14 | 54 |
ecto-epithelium | 2.11e-14 | 73 |
neural tube | 1.47e-13 | 52 |
neural rod | 1.47e-13 | 52 |
future spinal cord | 1.47e-13 | 52 |
neural keel | 1.47e-13 | 52 |
brain | 1.05e-12 | 47 |
future brain | 1.05e-12 | 47 |
regional part of brain | 4.12e-12 | 46 |
anterior neural tube | 3.13e-11 | 40 |
regional part of forebrain | 1.27e-10 | 39 |
forebrain | 1.27e-10 | 39 |
future forebrain | 1.27e-10 | 39 |
gray matter | 1.36e-09 | 34 |
brain grey matter | 7.32e-09 | 29 |
regional part of telencephalon | 7.32e-09 | 29 |
telencephalon | 7.32e-09 | 29 |
occipital lobe | 5.20e-08 | 10 |
visual cortex | 5.20e-08 | 10 |
neocortex | 5.20e-08 | 10 |
tube | 9.41e-08 | 114 |
cerebral cortex | 6.16e-07 | 21 |
cerebral hemisphere | 6.16e-07 | 21 |
pallium | 6.16e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.