Personal tools

MCL coexpression mm9:76: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 1: Line 1:
{{MCL_coexpression_mm9
{
|coexpression_dpi_cluster_scores_mean=0.0687880476346398

Latest revision as of 14:38, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:52410401..52410408,+p6@Slc35f1
Mm9::chr10:83903430..83903450,-p3@Nuak1
Mm9::chr11:110340662..110340679,+p4@Map2k6
Mm9::chr11:110340687..110340700,+p5@Map2k6
Mm9::chr11:113480632..113480660,+p1@Sstr2
Mm9::chr11:69843632..69843643,+p28@Dlg4
Mm9::chr11:70040791..70040799,-p@chr11:70040791..70040799
-
Mm9::chr11:98182595..98182598,-p@chr11:98182595..98182598
-
Mm9::chr11:98187374..98187396,-p@chr11:98187374..98187396
-
Mm9::chr11:98187500..98187512,-p@chr11:98187500..98187512
-
Mm9::chr11:98187516..98187525,-p@chr11:98187516..98187525
-
Mm9::chr11:98187616..98187626,+p@chr11:98187616..98187626
+
Mm9::chr11:98187765..98187774,-p@chr11:98187765..98187774
-
Mm9::chr11:98188005..98188016,-p@chr11:98188005..98188016
-
Mm9::chr11:98189657..98189671,-p@chr11:98189657..98189671
-
Mm9::chr11:98190918..98190951,-p1@Neurod2
Mm9::chr11:98233288..98233299,+p@chr11:98233288..98233299
+
Mm9::chr12:28025601..28025611,-p@chr12:28025601..28025611
-
Mm9::chr12:50478644..50478659,+p@chr12:50478644..50478659
+
Mm9::chr12:50478755..50478772,+p@chr12:50478755..50478772
+
Mm9::chr12:50478808..50478838,+p@chr12:50478808..50478838
+
Mm9::chr12:50482811..50482817,-p@chr12:50482811..50482817
-
Mm9::chr12:50482961..50482982,+p@chr12:50482961..50482982
+
Mm9::chr12:50483044..50483065,+p@chr12:50483044..50483065
+
Mm9::chr12:50483639..50483654,+p1@Foxg1
Mm9::chr12:50483663..50483678,+p3@Foxg1
Mm9::chr12:50484904..50484950,+p@chr12:50484904..50484950
+
Mm9::chr12:50485112..50485144,+p@chr12:50485112..50485144
+
Mm9::chr12:50485245..50485269,+p@chr12:50485245..50485269
+
Mm9::chr12:50485274..50485303,+p@chr12:50485274..50485303
+
Mm9::chr12:50485343..50485352,+p@chr12:50485343..50485352
+
Mm9::chr12:50485353..50485385,+p@chr12:50485353..50485385
+
Mm9::chr12:50485497..50485510,+p@chr12:50485497..50485510
+
Mm9::chr12:50485547..50485567,+p@chr12:50485547..50485567
+
Mm9::chr12:50485922..50485933,+p11@Foxg1
Mm9::chr12:50485948..50485959,+p7@Foxg1
Mm9::chr12:50485973..50486015,+p2@Foxg1
Mm9::chr12:50486431..50486450,+p@chr12:50486431..50486450
+
Mm9::chr12:50486639..50486645,+p@chr12:50486639..50486645
+
Mm9::chr12:51050188..51050205,+p@chr12:51050188..51050205
+
Mm9::chr12:71214719..71214755,-p@chr12:71214719..71214755
-
Mm9::chr13:29045252..29045271,-p5@Sox4
Mm9::chr13:29045274..29045293,-p6@Sox4
Mm9::chr13:29045296..29045307,-p8@Sox4
Mm9::chr13:29045308..29045318,-p10@Sox4
Mm9::chr13:29045321..29045337,-p2@Sox4
Mm9::chr13:77186886..77186936,-p3@Ankrd32
Mm9::chr13:83854934..83854950,+p@chr13:83854934..83854950
+
Mm9::chr13:83878479..83878492,+p1@ENSMUST00000052354
Mm9::chr14:13175827..13175832,-p@chr14:13175827..13175832
-
Mm9::chr14:13176244..13176263,-p@chr14:13176244..13176263
-
Mm9::chr14:13178147..13178185,-p1@Fezf2
Mm9::chr14:13178294..13178303,-p7@Fezf2
Mm9::chr14:13178323..13178347,-p3@Fezf2
Mm9::chr14:13178361..13178386,-p2@Fezf2
Mm9::chr14:22319505..22319521,-p@chr14:22319505..22319521
-
Mm9::chr15:103344762..103344783,+p@chr15:103344762..103344783
+
Mm9::chr15:30103246..30103251,-p@chr15:30103246..30103251
-
Mm9::chr15:43615527..43615530,-p@chr15:43615527..43615530
-
Mm9::chr15:44578120..44578143,-p@chr15:44578120..44578143
-
Mm9::chr15:66663187..66663230,-p9@Sla
Mm9::chr15:83602482..83602487,+p@chr15:83602482..83602487
+
Mm9::chr15:83610405..83610418,+p3@Mpped1
Mm9::chr15:83610429..83610463,+p2@Mpped1
Mm9::chr15:83610464..83610516,+p1@Mpped1
Mm9::chr15:83614756..83614778,+p7@Mpped1
Mm9::chr15:85408549..85408562,-p8@Wnt7b
Mm9::chr15:85408566..85408584,-p6@Wnt7b
Mm9::chr18:65048385..65048406,-p@chr18:65048385..65048406
-
Mm9::chr18:65048430..65048437,-p@chr18:65048430..65048437
-
Mm9::chr18:67020112..67020139,-p1@Mc4r
Mm9::chr18:67020151..67020162,-p2@Mc4r
Mm9::chr18:69753108..69753139,+p8@Tcf4
Mm9::chr18:69753145..69753159,+p14@Tcf4
Mm9::chr18:69753168..69753186,+p12@Tcf4
Mm9::chr18:69753200..69753211,+p@chr18:69753200..69753211
+
Mm9::chr18:69753237..69753261,+p@chr18:69753237..69753261
+
Mm9::chr18:69753278..69753292,+p@chr18:69753278..69753292
+
Mm9::chr1:173959095..173959106,-p@chr1:173959095..173959106
-
Mm9::chr1:178927083..178927100,+p@chr1:178927083..178927100
+
Mm9::chr1:179372543..179372557,+p9@Zfp238
Mm9::chr1:179372625..179372654,+p4@Zfp238
Mm9::chr1:179372666..179372678,+p11@Zfp238
Mm9::chr1:179374820..179374831,+p3@Zfp238
Mm9::chr1:179374862..179374873,+p6@Zfp238
Mm9::chr1:179375791..179375803,+p10@Zfp238
Mm9::chr1:179377246..179377266,+p@chr1:179377246..179377266
+
Mm9::chr1:179377320..179377331,+p@chr1:179377320..179377331
+
Mm9::chr1:179377595..179377604,+p@chr1:179377595..179377604
+
Mm9::chr1:41800521..41800543,+p@chr1:41800521..41800543
+
Mm9::chr1:41800574..41800586,+p@chr1:41800574..41800586
+
Mm9::chr1:42708169..42708173,-p@chr1:42708169..42708173
-
Mm9::chr1:42752654..42752665,+p5@Pou3f3
Mm9::chr1:56853013..56853024,-p@chr1:56853013..56853024
-
Mm9::chr1:56928204..56928208,-p@chr1:56928204..56928208
-
Mm9::chr1:56928531..56928535,-p@chr1:56928531..56928535
-
Mm9::chr1:56955934..56955944,-p@chr1:56955934..56955944
-
Mm9::chr1:57026671..57026694,-p@chr1:57026671..57026694
-
Mm9::chr1:57028111..57028122,-p9@Satb2
Mm9::chr1:57028125..57028149,-p2@Satb2
Mm9::chr1:57028157..57028173,-p3@Satb2
Mm9::chr1:57028182..57028191,-p11@Satb2
Mm9::chr1:57028295..57028349,+p1@9130024F11Rik
Mm9::chr1:57028594..57028604,-p10@Satb2
Mm9::chr1:57028606..57028625,-p4@Satb2
Mm9::chr1:57028877..57028888,+p@chr1:57028877..57028888
+
Mm9::chr1:57029024..57029050,+p@chr1:57029024..57029050
+
Mm9::chr1:57029399..57029433,+p@chr1:57029399..57029433
+
Mm9::chr1:57030876..57030880,+p@chr1:57030876..57030880
+
Mm9::chr2:151906844..151906873,+p3@Scrt2
Mm9::chr2:61642558..61642595,+p3@Tbr1
Mm9::chr2:61642631..61642684,+p1@Tbr1
Mm9::chr2:61642695..61642702,+p5@Tbr1
Mm9::chr2:61642743..61642758,+p2@Tbr1
Mm9::chr2:61642814..61642823,+p@chr2:61642814..61642823
+
Mm9::chr2:61643033..61643053,+p@chr2:61643033..61643053
+
Mm9::chr2:61643081..61643095,+p@chr2:61643081..61643095
+
Mm9::chr2:61643097..61643110,+p@chr2:61643097..61643110
+
Mm9::chr2:61650563..61650574,+p@chr2:61650563..61650574
+
Mm9::chr2:61651001..61651017,+p@chr2:61651001..61651017
+
Mm9::chr2:6792577..6792584,+p@chr2:6792577..6792584
+
Mm9::chr2:6806151..6806167,-p28@Celf2
Mm9::chr2:6806188..6806236,-p19@Celf2
Mm9::chr2:6806268..6806283,-p21@Celf2
Mm9::chr2:6806301..6806314,-p22@Celf2
Mm9::chr2:75086522..75086539,+p@chr2:75086522..75086539
+
Mm9::chr3:17954233..17954249,+p1@Bhlhe22
Mm9::chr3:17954392..17954407,+p2@Bhlhe22
Mm9::chr3:84108569..84108582,-p22@Trim2
Mm9::chr3:84108600..84108614,-p13@Trim2
Mm9::chr3:84108655..84108675,-p12@Trim2
Mm9::chr4:102997512..102997558,+p@chr4:102997512..102997558
+
Mm9::chr4:22413708..22413719,-p@chr4:22413708..22413719
-
Mm9::chr4:22413749..22413760,-p@chr4:22413749..22413760
-
Mm9::chr4:82138721..82138755,-p@chr4:82138721..82138755
-
Mm9::chr4:82144326..82144337,-p@chr4:82144326..82144337
-
Mm9::chr4:82145196..82145229,-p7@Nfib
Mm9::chr4:82145232..82145259,-p9@Nfib
Mm9::chr4:82155488..82155496,+p@chr4:82155488..82155496
+
Mm9::chr4:82879069..82879081,-p8@Ttc39b
Mm9::chr5:90312346..90312368,-p2@Adamts3
Mm9::chr6:144152590..144152602,-p22@Sox5
Mm9::chr6:144152648..144152680,-p5@Sox5
Mm9::chr6:144152701..144152714,-p24@Sox5
Mm9::chr6:144157869..144157876,-p26@Sox5
Mm9::chr6:144157880..144157889,-p25@Sox5
Mm9::chr6:144157893..144157905,-p14@Sox5
Mm9::chr6:144157924..144157955,-p2@Sox5
Mm9::chr6:144157960..144157967,-p20@Sox5
Mm9::chr6:144157968..144157989,-p7@Sox5
Mm9::chr6:144157991..144158007,-p9@Sox5
Mm9::chr6:144158153..144158167,-p19@Sox5
Mm9::chr6:144158183..144158210,-p11@Sox5
Mm9::chr6:144158267..144158282,-p16@Sox5
Mm9::chr6:55628519..55628533,-p@chr6:55628519..55628533
-
Mm9::chr6:55628542..55628563,-p@chr6:55628542..55628563
-
Mm9::chr6:55629052..55629066,-p@chr6:55629052..55629066
-
Mm9::chr6:55629608..55629628,-p@chr6:55629608..55629628
-
Mm9::chr6:55631042..55631102,-p1@Neurod6
Mm9::chr6:55631181..55631195,+p@chr6:55631181..55631195
+
Mm9::chr6:55631202..55631233,+p@chr6:55631202..55631233
+
Mm9::chr6:55631251..55631265,-p2@Neurod6
Mm9::chr6:55631282..55631299,+p@chr6:55631282..55631299
+
Mm9::chr6:55631324..55631335,-p3@Neurod6
Mm9::chr7:86531829..86531867,-p2@Rlbp1
Mm9::chr7:86680883..86680947,+p@chr7:86680883..86680947
+
Mm9::chr8:71658592..71658596,-p@chr8:71658592..71658596
-
Mm9::chr8:71708076..71708139,-p1@ENSMUST00000172413
p1@uc009lxb.1
Mm9::chr8:8621291..8621320,-p@chr8:8621291..8621320
-
Mm9::chr9:107407918..107407940,+p5@Cacna2d2
Mm9::chr9:118394263..118394288,+p@chr9:118394263..118394288
+
Mm9::chr9:120954001..120954018,-p6@Ulk4
Mm9::chr9:58046928..58046939,-p@chr9:58046928..58046939
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:76&oldid=3072075"