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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008128
|DRA_sample_Accession=CAGE@DRS008128
|accession_numbers=CAGE;DRX008236;DRR009108;DRZ000533;DRZ001918
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000052
|is_a=EFO:0002091;;FF:0000052
|is_obsolete=
|is_obsolete=
|library_id=CNhs12026
|library_ids=CNhs12026
|library_ids=CNhs12026
|name=Endothelial Cells - Vein, donor3
|name=Endothelial Cells - Vein, donor3
Line 87: Line 89:
|top_motifs=SOX{8,9,10}:2.05617083491;RXR{A,B,G}:1.38956455004;TLX1..3_NFIC{dimer}:1.03060474654;SOX2:1.01642716747;ONECUT1,2:1.01292525946;NFATC1..3:0.895351892066;PAX8:0.894594289454;TFAP2{A,C}:0.891447233261;IKZF2:0.856063221986;AR:0.850409883585;XCPE1{core}:0.845377348433;PAX6:0.816679805226;GTF2A1,2:0.816032364627;TFDP1:0.816012286315;GATA6:0.777901566403;HIC1:0.741310145125;ZFP161:0.707424546504;POU3F1..4:0.697770078601;EN1,2:0.674529807286;HBP1_HMGB_SSRP1_UBTF:0.660358294311;PAX1,9:0.639877367846;HES1:0.615020086044;TFAP4:0.59993264468;SOX17:0.599259491349;TFAP2B:0.578664014851;LEF1_TCF7_TCF7L1,2:0.564622564518;IKZF1:0.543507742836;ETS1,2:0.522032971617;TP53:0.49394614862;ARID5B:0.480448504798;FOXL1:0.458643157629;SOX5:0.453439855266;SPIB:0.448853105596;ELF1,2,4:0.442145612832;ALX1:0.437730067841;ZNF148:0.431652774189;FOX{I1,J2}:0.40649091985;NR5A1,2:0.365114114675;SP1:0.344898062993;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320823188972;SPZ1:0.302388918397;EGR1..3:0.281549143226;MYB:0.28121391911;REST:0.266293747732;BACH2:0.259346419262;UFEwm:0.254320369729;ADNP_IRX_SIX_ZHX:0.248354624817;bHLH_family:0.230703798694;ZBTB6:0.228947173627;POU1F1:0.223494605876;NFE2:0.217892784227;TEAD1:0.208869368133;MTE{core}:0.200220546287;GATA4:0.193467530218;E2F1..5:0.187385960502;GFI1:0.175429080761;ZIC1..3:0.174235310408;FOS_FOS{B,L1}_JUN{B,D}:0.171536877087;GZF1:0.160817986187;PPARG:0.134125866445;MED-1{core}:0.130115490397;NANOG{mouse}:0.125495328703;FOSL2:0.113695478257;ZNF143:0.112789831426;PAX5:0.106149252218;NKX2-2,8:0.0882815967741;YY1:0.0878091980212;TBP:0.085156255357;ZNF423:0.0744087244447;GFI1B:0.0738943199183;ZNF238:0.0719270786586;HNF4A_NR2F1,2:0.0616098749097;CRX:0.0607365102474;HOX{A5,B5}:0.0492222559411;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0383344282189;FOXA2:0.0277332575207;POU2F1..3:0.0245917345443;NFE2L1:0.0235142386168;PATZ1:0.0188943073582;GLI1..3:0.0159817264276;NR3C1:0.0157419298511;EBF1:0.000204375726114;NFY{A,B,C}:-0.0133267813892;ESRRA:-0.0142769682752;NRF1:-0.0236800276116;PITX1..3:-0.0276263866672;POU6F1:-0.0333138753825;NANOG:-0.0537926393933;LMO2:-0.0596394580915;TFCP2:-0.0734134076121;PBX1:-0.0747031678633;GCM1,2:-0.0789931593815;GTF2I:-0.0795395634277;SPI1:-0.0818455750864;ALX4:-0.0890663475281;NFE2L2:-0.0945441433271;RORA:-0.0982018255315;FOXD3:-0.0983356949432;NHLH1,2:-0.101837054825;MAZ:-0.108197748467;MYOD1:-0.142066395913;SRF:-0.144130385234;STAT5{A,B}:-0.171265014095;HAND1,2:-0.175461646971;CDC5L:-0.176147903334;BREu{core}:-0.179809200521;MTF1:-0.20664589391;STAT2,4,6:-0.208448030321;LHX3,4:-0.209640334554;TEF:-0.214166823202;FOXM1:-0.218235994388;HNF1A:-0.232239679525;MEF2{A,B,C,D}:-0.233326504724;FOXQ1:-0.240669880801;ESR1:-0.243355230453;NKX2-3_NKX2-5:-0.265848900489;CUX2:-0.287697576072;PAX2:-0.312092023774;OCT4_SOX2{dimer}:-0.322057518939;DMAP1_NCOR{1,2}_SMARC:-0.329961686172;PRRX1,2:-0.33780775653;MZF1:-0.347304320111;RFX1:-0.364589791846;KLF4:-0.375309140209;TAL1_TCF{3,4,12}:-0.380921394019;NR1H4:-0.39548926316;RREB1:-0.402181256879;SMAD1..7,9:-0.407569798798;ATF6:-0.408316900078;NFKB1_REL_RELA:-0.412867829834;ATF2:-0.433528894305;RBPJ:-0.446394038298;HIF1A:-0.454793738031;EVI1:-0.475562110353;HMGA1,2:-0.530407969588;RUNX1..3:-0.543412333706;HLF:-0.544743780787;TGIF1:-0.553813674403;NR6A1:-0.554996646806;XBP1:-0.558700594715;CREB1:-0.565403861673;RXRA_VDR{dimer}:-0.566379176473;SNAI1..3:-0.572289958283;PRDM1:-0.606104681414;JUN:-0.607481234837;AIRE:-0.612040438262;T:-0.635756819273;ZBTB16:-0.646882201419;TLX2:-0.646924565428;CEBPA,B_DDIT3:-0.646964562489;TBX4,5:-0.649502353311;MYBL2:-0.654477831769;FOX{D1,D2}:-0.656145064626;HSF1,2:-0.656940053567;HMX1:-0.658334214233;VSX1,2:-0.664994066389;FOXO1,3,4:-0.675746668734;TOPORS:-0.676248790222;PAX3,7:-0.681586551593;POU5F1:-0.70344144285;FOXP1:-0.723112947012;FOX{F1,F2,J1}:-0.726498892601;ELK1,4_GABP{A,B1}:-0.728393895382;SREBF1,2:-0.741184841691;NKX3-2:-0.754265025047;FOXP3:-0.763213536021;MYFfamily:-0.766590779918;IRF7:-0.776217174094;IRF1,2:-0.807221802243;ZNF384:-0.812309039568;DBP:-0.81249321488;FOXN1:-0.813067696854;HOX{A6,A7,B6,B7}:-0.824938572601;NFIL3:-0.836084308031;ZEB1:-0.854019811914;STAT1,3:-0.888922253782;HOXA9_MEIS1:-0.935823439128;EP300:-0.944729644076;NKX2-1,4:-0.957322706692;ATF4:-0.962157131532;PAX4:-0.984841839976;AHR_ARNT_ARNT2:-0.996131105631;BPTF:-1.02309154538;HOX{A4,D4}:-1.02499732147;MAFB:-1.03586788788;ATF5_CREB3:-1.08922655273;RFX2..5_RFXANK_RFXAP:-1.13236449143;PDX1:-1.13957754037;NFIX:-1.16939835591;CDX1,2,4:-1.20899579428;NKX6-1,2:-1.36243943632;NKX3-1:-1.68127065852
|top_motifs=SOX{8,9,10}:2.05617083491;RXR{A,B,G}:1.38956455004;TLX1..3_NFIC{dimer}:1.03060474654;SOX2:1.01642716747;ONECUT1,2:1.01292525946;NFATC1..3:0.895351892066;PAX8:0.894594289454;TFAP2{A,C}:0.891447233261;IKZF2:0.856063221986;AR:0.850409883585;XCPE1{core}:0.845377348433;PAX6:0.816679805226;GTF2A1,2:0.816032364627;TFDP1:0.816012286315;GATA6:0.777901566403;HIC1:0.741310145125;ZFP161:0.707424546504;POU3F1..4:0.697770078601;EN1,2:0.674529807286;HBP1_HMGB_SSRP1_UBTF:0.660358294311;PAX1,9:0.639877367846;HES1:0.615020086044;TFAP4:0.59993264468;SOX17:0.599259491349;TFAP2B:0.578664014851;LEF1_TCF7_TCF7L1,2:0.564622564518;IKZF1:0.543507742836;ETS1,2:0.522032971617;TP53:0.49394614862;ARID5B:0.480448504798;FOXL1:0.458643157629;SOX5:0.453439855266;SPIB:0.448853105596;ELF1,2,4:0.442145612832;ALX1:0.437730067841;ZNF148:0.431652774189;FOX{I1,J2}:0.40649091985;NR5A1,2:0.365114114675;SP1:0.344898062993;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320823188972;SPZ1:0.302388918397;EGR1..3:0.281549143226;MYB:0.28121391911;REST:0.266293747732;BACH2:0.259346419262;UFEwm:0.254320369729;ADNP_IRX_SIX_ZHX:0.248354624817;bHLH_family:0.230703798694;ZBTB6:0.228947173627;POU1F1:0.223494605876;NFE2:0.217892784227;TEAD1:0.208869368133;MTE{core}:0.200220546287;GATA4:0.193467530218;E2F1..5:0.187385960502;GFI1:0.175429080761;ZIC1..3:0.174235310408;FOS_FOS{B,L1}_JUN{B,D}:0.171536877087;GZF1:0.160817986187;PPARG:0.134125866445;MED-1{core}:0.130115490397;NANOG{mouse}:0.125495328703;FOSL2:0.113695478257;ZNF143:0.112789831426;PAX5:0.106149252218;NKX2-2,8:0.0882815967741;YY1:0.0878091980212;TBP:0.085156255357;ZNF423:0.0744087244447;GFI1B:0.0738943199183;ZNF238:0.0719270786586;HNF4A_NR2F1,2:0.0616098749097;CRX:0.0607365102474;HOX{A5,B5}:0.0492222559411;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0383344282189;FOXA2:0.0277332575207;POU2F1..3:0.0245917345443;NFE2L1:0.0235142386168;PATZ1:0.0188943073582;GLI1..3:0.0159817264276;NR3C1:0.0157419298511;EBF1:0.000204375726114;NFY{A,B,C}:-0.0133267813892;ESRRA:-0.0142769682752;NRF1:-0.0236800276116;PITX1..3:-0.0276263866672;POU6F1:-0.0333138753825;NANOG:-0.0537926393933;LMO2:-0.0596394580915;TFCP2:-0.0734134076121;PBX1:-0.0747031678633;GCM1,2:-0.0789931593815;GTF2I:-0.0795395634277;SPI1:-0.0818455750864;ALX4:-0.0890663475281;NFE2L2:-0.0945441433271;RORA:-0.0982018255315;FOXD3:-0.0983356949432;NHLH1,2:-0.101837054825;MAZ:-0.108197748467;MYOD1:-0.142066395913;SRF:-0.144130385234;STAT5{A,B}:-0.171265014095;HAND1,2:-0.175461646971;CDC5L:-0.176147903334;BREu{core}:-0.179809200521;MTF1:-0.20664589391;STAT2,4,6:-0.208448030321;LHX3,4:-0.209640334554;TEF:-0.214166823202;FOXM1:-0.218235994388;HNF1A:-0.232239679525;MEF2{A,B,C,D}:-0.233326504724;FOXQ1:-0.240669880801;ESR1:-0.243355230453;NKX2-3_NKX2-5:-0.265848900489;CUX2:-0.287697576072;PAX2:-0.312092023774;OCT4_SOX2{dimer}:-0.322057518939;DMAP1_NCOR{1,2}_SMARC:-0.329961686172;PRRX1,2:-0.33780775653;MZF1:-0.347304320111;RFX1:-0.364589791846;KLF4:-0.375309140209;TAL1_TCF{3,4,12}:-0.380921394019;NR1H4:-0.39548926316;RREB1:-0.402181256879;SMAD1..7,9:-0.407569798798;ATF6:-0.408316900078;NFKB1_REL_RELA:-0.412867829834;ATF2:-0.433528894305;RBPJ:-0.446394038298;HIF1A:-0.454793738031;EVI1:-0.475562110353;HMGA1,2:-0.530407969588;RUNX1..3:-0.543412333706;HLF:-0.544743780787;TGIF1:-0.553813674403;NR6A1:-0.554996646806;XBP1:-0.558700594715;CREB1:-0.565403861673;RXRA_VDR{dimer}:-0.566379176473;SNAI1..3:-0.572289958283;PRDM1:-0.606104681414;JUN:-0.607481234837;AIRE:-0.612040438262;T:-0.635756819273;ZBTB16:-0.646882201419;TLX2:-0.646924565428;CEBPA,B_DDIT3:-0.646964562489;TBX4,5:-0.649502353311;MYBL2:-0.654477831769;FOX{D1,D2}:-0.656145064626;HSF1,2:-0.656940053567;HMX1:-0.658334214233;VSX1,2:-0.664994066389;FOXO1,3,4:-0.675746668734;TOPORS:-0.676248790222;PAX3,7:-0.681586551593;POU5F1:-0.70344144285;FOXP1:-0.723112947012;FOX{F1,F2,J1}:-0.726498892601;ELK1,4_GABP{A,B1}:-0.728393895382;SREBF1,2:-0.741184841691;NKX3-2:-0.754265025047;FOXP3:-0.763213536021;MYFfamily:-0.766590779918;IRF7:-0.776217174094;IRF1,2:-0.807221802243;ZNF384:-0.812309039568;DBP:-0.81249321488;FOXN1:-0.813067696854;HOX{A6,A7,B6,B7}:-0.824938572601;NFIL3:-0.836084308031;ZEB1:-0.854019811914;STAT1,3:-0.888922253782;HOXA9_MEIS1:-0.935823439128;EP300:-0.944729644076;NKX2-1,4:-0.957322706692;ATF4:-0.962157131532;PAX4:-0.984841839976;AHR_ARNT_ARNT2:-0.996131105631;BPTF:-1.02309154538;HOX{A4,D4}:-1.02499732147;MAFB:-1.03586788788;ATF5_CREB3:-1.08922655273;RFX2..5_RFXANK_RFXAP:-1.13236449143;PDX1:-1.13957754037;NFIX:-1.16939835591;CDX1,2,4:-1.20899579428;NKX6-1,2:-1.36243943632;NKX3-1:-1.68127065852
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008128
|accession_numbers=DRX008236;DRR009108;DRZ000533;DRZ001918;CAGE
|library_id=CNhs12026
}}
}}

Revision as of 19:57, 17 October 2013


Name:Endothelial Cells - Vein, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12026
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuevein
dev stageinfant
sexfemale
ageneonatal
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1700
catalog numberCA200-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008128
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12026 CAGE DRX008236 DRR009108
Accession ID Hg19

Library idBAMCTSS
CNhs12026 DRZ000533 DRZ001918
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0783
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0871
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.226
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.505
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0141
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.205
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.229
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.211
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.0153
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.34
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.425
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.296
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.136
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.239
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.614
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.136
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12026

Jaspar motifP-value
MA0002.20.00243
MA0003.10.559
MA0004.10.765
MA0006.10.0767
MA0007.10.0171
MA0009.10.25
MA0014.10.907
MA0017.10.973
MA0018.22.33448e-5
MA0019.10.0388
MA0024.10.323
MA0025.10.674
MA0027.10.89
MA0028.10.162
MA0029.10.214
MA0030.10.378
MA0031.10.383
MA0035.20.00948
MA0038.10.387
MA0039.20.595
MA0040.10.686
MA0041.10.233
MA0042.10.554
MA0043.11.18914e-8
MA0046.10.845
MA0047.20.344
MA0048.10.077
MA0050.13.6088e-6
MA0051.10.0449
MA0052.10.315
MA0055.10.00304
MA0057.10.244
MA0058.10.966
MA0059.10.8
MA0060.10.0615
MA0061.10.0012
MA0062.20.00949
MA0065.20.849
MA0066.10.763
MA0067.10.0389
MA0068.10.705
MA0069.10.0161
MA0070.10.706
MA0071.10.347
MA0072.10.848
MA0073.10.762
MA0074.10.986
MA0076.10.00153
MA0077.11.63507e-6
MA0078.10.00103
MA0079.20.176
MA0080.20.0597
MA0081.10.327
MA0083.10.472
MA0084.10.245
MA0087.10.386
MA0088.10.634
MA0090.10.388
MA0091.10.866
MA0092.10.812
MA0093.10.752
MA0099.22.91446e-8
MA0100.10.725
MA0101.10.0646
MA0102.29.31862e-7
MA0103.10.0292
MA0104.20.192
MA0105.10.00194
MA0106.10.00401
MA0107.10.0478
MA0108.20.00462
MA0111.10.668
MA0112.20.074
MA0113.10.604
MA0114.10.174
MA0115.10.405
MA0116.10.0241
MA0117.10.267
MA0119.10.354
MA0122.10.153
MA0124.10.765
MA0125.10.835
MA0131.10.897
MA0135.10.334
MA0136.10.242
MA0137.20.00854
MA0138.20.998
MA0139.10.855
MA0140.10.0625
MA0141.10.0889
MA0142.10.708
MA0143.10.819
MA0144.10.633
MA0145.10.593
MA0146.10.781
MA0147.10.538
MA0148.10.233
MA0149.10.0241
MA0150.10.562
MA0152.10.661
MA0153.10.201
MA0154.10.0833
MA0155.10.105
MA0156.10.25
MA0157.10.509
MA0159.10.57
MA0160.10.451
MA0162.10.276
MA0163.10.00209
MA0164.10.225
MA0258.10.275
MA0259.10.771



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12026

Novel motifP-value
10.474
100.0622
1000.778
1010.0716
1020.879
1030.551
1040.859
1050.303
1060.649
1070.0981
1080.741
1090.227
110.435
1100.274
1110.865
1120.534
1130.51
1140.666
1150.735
1160.831
1170.785
1180.84
1190.629
120.42
1200.00404
1210.735
1220.834
1230.00901
1240.00679
1250.828
1260.751
1270.938
1280.466
1290.408
130.845
1300.704
1310.575
1320.472
1330.578
1340.58
1350.186
1360.0215
1370.0409
1380.97
1390.874
140.334
1400.553
1410.565
1420.615
1430.0654
1440.384
1450.27
1460.204
1470.2
1480.0667
1490.182
150.708
1500.131
1510.673
1520.0321
1530.0058
1540.36
1550.253
1560.334
1570.265
1580.0812
1590.616
160.786
1600.191
1610.0366
1620.768
1630.872
1640.526
1650.448
1660.0868
1670.108
1680.956
1690.335
170.529
180.768
190.985
20.789
200.202
210.723
220.421
230.654
240.887
250.26
260.661
270.979
280.101
290.74
30.449
300.86
310.924
320.324
330.572
340.105
350.144
360.472
370.766
380.951
390.48
40.959
400.136
410.0565
420.713
430.339
440.925
450.624
460.688
470.757
480.324
490.19
50.53
500.909
510.915
520.27
530.174
540.889
550.143
560.885
570.772
580.0165
590.648
60.257
600.235
610.911
620.131
630.883
640.918
650.965
660.312
670.959
680.0767
690.433
70.617
700.179
710.0262
720.914
730.00229
740.285
750.898
760.512
770.766
780.902
790.292
80.0734
800.68
810.163
820.378
830.362
840.516
850.825
860.755
870.0764
880.595
890.729
90.784
900.488
910.759
920.351
930.644
940.0799
950.179
960.653
970.653
980.985
990.00267



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12026


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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