FFCP PHASE1:Hg19::chr10:76871399..76871426,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=142891 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26320 | |||
|TSSclassifier=strong | |||
|UniProt=Q96LT4 | |||
|association_with_transcript=6bp_to_ENST00000542569,NM_001174156,NM_144660,uc001jwx.1_5end | |||
|description=CAGE_peak_1_at_SAMD8_5end | |||
|id=chr10:76871399..76871426,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.16e-20!42;CL:0000860!2.18e-18!45;CL:0000766!1.32e-15!76;CL:0002009!5.85e-13!65;CL:0000557!1.25e-12!71;CL:0002194!4.25e-12!63;CL:0000576!4.25e-12!63;CL:0000040!4.25e-12!63;CL:0000559!4.25e-12!63;CL:0000738!2.70e-11!140;CL:0000839!1.34e-10!70;CL:0002087!2.84e-07!119;CL:0002031!6.39e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.11e-16;33!CL:0002057;2.11e-16;33!CL:0000473;2.69e-11;39!CL:0000234;2.69e-11;39!CL:0000576;8.93e-11;48!CL:0000766;1.79e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.16e-20,42;CL:0002057,2.16e-20,42;CL:0000473,4.77e-17,48;CL:0000234,4.77e-17,48;CL:0000766,2.30e-16,72;CL:0002009,1.08e-13,61;CL:0000557,2.80e-13,67;CL:0002194,8.37e-13,59;CL:0000576,8.37e-13,59;CL:0000040,8.37e-13,59;CL:0000559,8.37e-13,59;CL:0000738,1.44e-11,136;CL:0000839,3.80e-11,66;CL:0002087,1.78e-07,115;CL:0002031,4.18e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;4.14e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.73e-29!115;UBERON:0001049!1.67e-14!57;UBERON:0005068!1.67e-14!57;UBERON:0006241!1.67e-14!57;UBERON:0007135!1.67e-14!57;UBERON:0003080!6.34e-13!42;UBERON:0002780!1.73e-12!41;UBERON:0001890!1.73e-12!41;UBERON:0006240!1.73e-12!41;UBERON:0002390!1.13e-11!102;UBERON:0003061!1.13e-11!102;UBERON:0002616!3.76e-11!59;UBERON:0002193!5.69e-10!112;UBERON:0002020!2.57e-09!34;UBERON:0003528!2.57e-09!34;UBERON:0001893!2.98e-09!34;UBERON:0002371!3.92e-09!80;UBERON:0002791!8.57e-09!33;UBERON:0001017!1.05e-08!82;UBERON:0001869!2.64e-08!32;UBERON:0000955!2.94e-08!69;UBERON:0006238!2.94e-08!69;UBERON:0001474!6.27e-08!86;UBERON:0003075!7.15e-08!86;UBERON:0007284!7.15e-08!86;UBERON:0005743!9.57e-08!86;UBERON:0004765!1.14e-07!101;UBERON:0001434!1.14e-07!101;UBERON:0000467!4.16e-07!625;UBERON:0000480!4.81e-07!626;UBERON:0000062!5.63e-07!511;UBERON:0002619!8.05e-07!22;UBERON:0002346!8.76e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.56e-09;41!UBERON:0001890;3.56e-09;41!UBERON:0000073;3.38e-08;53!UBERON:0002616;3.38e-08;53!UBERON:0007023;4.58e-08;114!UBERON:0001893;5.88e-08;34!UBERON:0003528;6.16e-08;34!UBERON:0002020;6.16e-08;34!UBERON:0002791;1.38e-07;32!UBERON:0001869;1.79e-07;32!UBERON:0002619;7.06e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.68e-29,114;UBERON:0001049,4.47e-14,56;UBERON:0005068,4.47e-14,56;UBERON:0006241,4.47e-14,56;UBERON:0007135,4.47e-14,56;UBERON:0000073,1.14e-12,53;UBERON:0002616,1.14e-12,53;UBERON:0002780,1.73e-12,41;UBERON:0001890,1.73e-12,41;UBERON:0003080,1.73e-12,41;UBERON:0006240,1.73e-12,41;UBERON:0002390,4.49e-12,98;UBERON:0003061,4.49e-12,98;UBERON:0002193,2.81e-10,108;UBERON:0002371,1.56e-09,76;UBERON:0003528,2.57e-09,34;UBERON:0002020,2.57e-09,34;UBERON:0001893,2.98e-09,34;UBERON:0001017,2.21e-08,81;UBERON:0002791,2.36e-08,32;UBERON:0001869,2.64e-08,32;UBERON:0001474,3.03e-08,82;UBERON:0004765,3.52e-08,90;UBERON:0000955,6.29e-08,68;UBERON:0006238,6.29e-08,68;UBERON:0003075,1.09e-07,82;UBERON:0007284,1.09e-07,82;UBERON:0001434,1.40e-07,100;UBERON:0002405,2.50e-07,93;UBERON:0001016,6.60e-07,89;UBERON:0002619,8.05e-07,22 | |||
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| |||
|short_description=p1@SAMD8 | |||
}} |
Revision as of 03:35, 11 January 2014
Short description: | p1@SAMD8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAMD8_5end |
Coexpression cluster: | NA |
Association with transcript: | 6bp_to_ENST00000542569, NM_001174156, NM_144660, uc001jwx.1_5end |
EntrezGene: | SAMD8 |
HGNC: | 26320 |
UniProt: | Q96LT4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.16e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.16e-20 | 42 |
defensive cell | 4.77e-17 | 48 |
phagocyte | 4.77e-17 | 48 |
myeloid leukocyte | 2.30e-16 | 72 |
macrophage dendritic cell progenitor | 1.08e-13 | 61 |
granulocyte monocyte progenitor cell | 2.80e-13 | 67 |
monopoietic cell | 8.37e-13 | 59 |
monocyte | 8.37e-13 | 59 |
monoblast | 8.37e-13 | 59 |
promonocyte | 8.37e-13 | 59 |
leukocyte | 1.44e-11 | 136 |
myeloid lineage restricted progenitor cell | 3.80e-11 | 66 |
nongranular leukocyte | 1.78e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 4.18e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.68e-29 | 114 |
neural tube | 4.47e-14 | 56 |
neural rod | 4.47e-14 | 56 |
future spinal cord | 4.47e-14 | 56 |
neural keel | 4.47e-14 | 56 |
regional part of nervous system | 1.14e-12 | 53 |
regional part of brain | 1.14e-12 | 53 |
regional part of forebrain | 1.73e-12 | 41 |
forebrain | 1.73e-12 | 41 |
anterior neural tube | 1.73e-12 | 41 |
future forebrain | 1.73e-12 | 41 |
hematopoietic system | 4.49e-12 | 98 |
blood island | 4.49e-12 | 98 |
hemolymphoid system | 2.81e-10 | 108 |
bone marrow | 1.56e-09 | 76 |
brain grey matter | 2.57e-09 | 34 |
gray matter | 2.57e-09 | 34 |
telencephalon | 2.98e-09 | 34 |
central nervous system | 2.21e-08 | 81 |
regional part of telencephalon | 2.36e-08 | 32 |
cerebral hemisphere | 2.64e-08 | 32 |
bone element | 3.03e-08 | 82 |
skeletal element | 3.52e-08 | 90 |
brain | 6.29e-08 | 68 |
future brain | 6.29e-08 | 68 |
neural plate | 1.09e-07 | 82 |
presumptive neural plate | 1.09e-07 | 82 |
skeletal system | 1.40e-07 | 100 |
immune system | 2.50e-07 | 93 |
nervous system | 6.60e-07 | 89 |
regional part of cerebral cortex | 8.05e-07 | 22 |