FFCP PHASE1:Hg19::chr4:2060590..2060605,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1913 | |||
|description=CAGE_peak_at_chr4:2060590..2060605,+ | |||
|id=chr4:2060590..2060605,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000632;9.43e-11;3!CL:0002537;5.86e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000632,7.42e-11,3;CL:0002537,6.77e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0010122;1.91e-15;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.43e-64!57;UBERON:0005068!4.43e-64!57;UBERON:0006241!4.43e-64!57;UBERON:0007135!4.43e-64!57;UBERON:0001017!4.25e-54!82;UBERON:0002616!4.99e-54!59;UBERON:0002020!6.98e-53!34;UBERON:0003528!6.98e-53!34;UBERON:0001869!6.55e-52!32;UBERON:0002780!7.80e-52!41;UBERON:0001890!7.80e-52!41;UBERON:0006240!7.80e-52!41;UBERON:0000955!2.85e-51!69;UBERON:0006238!2.85e-51!69;UBERON:0005743!3.12e-51!86;UBERON:0003080!1.78e-50!42;UBERON:0001893!1.30e-48!34;UBERON:0000073!1.20e-45!94;UBERON:0001016!1.20e-45!94;UBERON:0002791!1.52e-45!33;UBERON:0002619!2.19e-45!22;UBERON:0001950!2.53e-44!20;UBERON:0003075!1.12e-42!86;UBERON:0007284!1.12e-42!86;UBERON:0002346!1.98e-40!90;UBERON:0000956!1.21e-39!25;UBERON:0000203!1.21e-39!25;UBERON:0007023!1.60e-34!115;UBERON:0003056!5.21e-33!61;UBERON:0000033!1.95e-27!123;UBERON:0000153!8.49e-26!129;UBERON:0007811!8.49e-26!129;UBERON:0004121!1.91e-23!169;UBERON:0000924!1.05e-22!173;UBERON:0006601!1.05e-22!173;UBERON:0001872!9.96e-20!5;UBERON:0000025!4.79e-18!194;UBERON:0001871!2.63e-17!7;UBERON:0000200!4.08e-16!6;UBERON:0002308!2.07e-14!9;UBERON:0000125!2.07e-14!9;UBERON:0003076!2.86e-14!15;UBERON:0003057!2.86e-14!15;UBERON:0004111!8.12e-14!241;UBERON:0002771!4.39e-12!3;UBERON:0000988!1.26e-11!3;UBERON:0002298!3.68e-11!8;UBERON:0000477!4.00e-11!286;UBERON:0002420!1.22e-10!9;UBERON:0007245!1.22e-10!9;UBERON:0010009!1.22e-10!9;UBERON:0010011!1.22e-10!9;UBERON:0000454!1.22e-10!9;UBERON:0004733!2.42e-10!12;UBERON:0002028!2.42e-10!12;UBERON:0007277!2.42e-10!12;UBERON:0000483!1.25e-09!309;UBERON:0004732!1.68e-09!13;UBERON:0000369!1.82e-09!4;UBERON:0002435!1.82e-09!4;UBERON:0000204!1.82e-09!4;UBERON:0010082!1.82e-09!4;UBERON:0000119!1.88e-09!312;UBERON:0009663!5.78e-09!7;UBERON:0000475!7.59e-09!365;UBERON:0001897!1.79e-08!2;UBERON:0000064!2.13e-08!219;UBERON:0002148!5.26e-08!2;UBERON:0009662!5.26e-08!2;UBERON:0000349!1.14e-07!5;UBERON:0002021!1.50e-07!5;UBERON:0000481!6.11e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002581;2.05e-29;1!UBERON:0002022;2.05e-29;1!UBERON:0001873;1.91e-15;2!UBERON:0001869;5.18e-13;32!UBERON:0001950;7.89e-13;20!UBERON:0001893;4.13e-12;34!UBERON:0003528;6.33e-12;34!UBERON:0002791;6.33e-12;32!UBERON:0002020;6.33e-12;34!UBERON:0002619;8.88e-12;22!UBERON:0005383;9.43e-11;3!UBERON:0005382;9.43e-11;3!UBERON:0002780;1.19e-10;41!UBERON:0001890;1.19e-10;41!UBERON:0000956;1.68e-10;25!UBERON:0000203;1.68e-10;25!UBERON:0000955;1.60e-09;68!UBERON:0001017;8.60e-09;75!UBERON:0000369;2.18e-08;4!UBERON:0002435;2.18e-08;4!UBERON:0000204;2.18e-08;4!UBERON:0000073;4.89e-07;53!UBERON:0002616;4.89e-07;53!UBERON:0001872;5.86e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002022,1.78e-29,1;UBERON:0002581,2.37e-29,1;UBERON:0001873,2.37e-15,2;UBERON:0010122,2.37e-15,2;UBERON:0002791,3.41e-14,32;UBERON:0001869,3.41e-14,32;UBERON:0003528,2.05e-13,34;UBERON:0002020,2.05e-13,34;UBERON:0001893,2.05e-13,34;UBERON:0001950,7.43e-13,20;UBERON:0002619,8.40e-12,22;UBERON:0002780,2.90e-11,41;UBERON:0001890,2.90e-11,41;UBERON:0003080,2.90e-11,41;UBERON:0006240,2.90e-11,41;UBERON:0005383,1.09e-10,3;UBERON:0005382,1.09e-10,3;UBERON:0000956,1.60e-10,25;UBERON:0000203,1.60e-10,25;UBERON:0000955,1.85e-10,68;UBERON:0006238,1.85e-10,68;UBERON:0001017,7.26e-09,81;UBERON:0000073,7.27e-09,53;UBERON:0002616,7.27e-09,53;UBERON:0001049,2.02e-08,56;UBERON:0005068,2.02e-08,56;UBERON:0006241,2.02e-08,56;UBERON:0007135,2.02e-08,56;UBERON:0000369,2.43e-08,4;UBERON:0002435,2.43e-08,4;UBERON:0000204,2.43e-08,4;UBERON:0010082,2.43e-08,4;UBERON:0001016,5.05e-08,89;UBERON:0003056,8.93e-08,61;UBERON:0001872,6.04e-07,5 | |||
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|short_description=p@chr4:2060590..2060605,+ | |||
}} |
Revision as of 23:51, 21 January 2014
Short description: | p@chr4:2060590..2060605, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:2060590..2060605, + |
Coexpression cluster: | C1913_brain_parietal_insula_temporal_frontal_postcentral_paracentral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stellate cell | 7.42e-11 | 3 |
amnion mesenchymal stem cell | 6.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
insula | 1.78e-29 | 1 |
postcentral gyrus | 2.37e-29 | 1 |
caudate nucleus | 2.37e-15 | 2 |
future caudate nucleus | 2.37e-15 | 2 |
regional part of telencephalon | 3.41e-14 | 32 |
cerebral hemisphere | 3.41e-14 | 32 |
brain grey matter | 2.05e-13 | 34 |
gray matter | 2.05e-13 | 34 |
telencephalon | 2.05e-13 | 34 |
neocortex | 7.43e-13 | 20 |
regional part of cerebral cortex | 8.40e-12 | 22 |
regional part of forebrain | 2.90e-11 | 41 |
forebrain | 2.90e-11 | 41 |
anterior neural tube | 2.90e-11 | 41 |
future forebrain | 2.90e-11 | 41 |
caudate-putamen | 1.09e-10 | 3 |
dorsal striatum | 1.09e-10 | 3 |
cerebral cortex | 1.60e-10 | 25 |
pallium | 1.60e-10 | 25 |
brain | 1.85e-10 | 68 |
future brain | 1.85e-10 | 68 |
central nervous system | 7.26e-09 | 81 |
regional part of nervous system | 7.27e-09 | 53 |
regional part of brain | 7.27e-09 | 53 |
neural tube | 2.02e-08 | 56 |
neural rod | 2.02e-08 | 56 |
future spinal cord | 2.02e-08 | 56 |
neural keel | 2.02e-08 | 56 |
corpus striatum | 2.43e-08 | 4 |
striatum | 2.43e-08 | 4 |
ventral part of telencephalon | 2.43e-08 | 4 |
future corpus striatum | 2.43e-08 | 4 |
nervous system | 5.05e-08 | 89 |
pre-chordal neural plate | 8.93e-08 | 61 |
parietal lobe | 6.04e-07 | 5 |