FFCP PHASE1:Hg19::chr5:58571396..58571416,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=239bp_to_uc003jsd.1_5end | |||
|coexpression_cluster_id=C4508 | |||
|description=CAGE_peak_2_at_uc003jsd.1_5end | |||
|id=chr5:58571396..58571416,- | |||
|ontology_enrichment_celltype=CL:0000115!1.77e-07!35;CL:0002139!1.81e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002188;3.16e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002188,3.85e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.82e-11;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.94e-31!115;UBERON:0001893!7.29e-16!34;UBERON:0002020!1.62e-15!34;UBERON:0003528!1.62e-15!34;UBERON:0002780!3.60e-15!41;UBERON:0001890!3.60e-15!41;UBERON:0006240!3.60e-15!41;UBERON:0001869!5.92e-15!32;UBERON:0002791!6.62e-15!33;UBERON:0003080!1.35e-14!42;UBERON:0001950!3.37e-14!20;UBERON:0002619!7.33e-14!22;UBERON:0002616!2.02e-13!59;UBERON:0001049!3.04e-13!57;UBERON:0005068!3.04e-13!57;UBERON:0006241!3.04e-13!57;UBERON:0007135!3.04e-13!57;UBERON:0000477!8.31e-13!286;UBERON:0000955!3.26e-12!69;UBERON:0006238!3.26e-12!69;UBERON:0000956!1.49e-11!25;UBERON:0000203!1.49e-11!25;UBERON:0003075!2.36e-11!86;UBERON:0007284!2.36e-11!86;UBERON:0001737!7.85e-11!9;UBERON:0000064!9.76e-11!219;UBERON:0002346!2.56e-10!90;UBERON:0001017!4.27e-10!82;UBERON:0005743!7.26e-10!86;UBERON:0003056!1.32e-09!61;UBERON:0004111!1.94e-09!241;UBERON:0000073!6.32e-08!94;UBERON:0001016!6.32e-08!94;UBERON:0000025!8.54e-08!194;UBERON:0000481!8.76e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;5.23e-21;20!UBERON:0001737;1.86e-20;9!UBERON:0001557;1.86e-20;9!UBERON:0002619;7.39e-19;22!UBERON:0000956;2.94e-16;25!UBERON:0000203;2.94e-16;25!UBERON:0001869;5.68e-14;32!UBERON:0001893;8.39e-14;34!UBERON:0002791;6.87e-12;32!UBERON:0000200;3.03e-11;6!UBERON:0003528;3.40e-11;34!UBERON:0002020;3.40e-11;34!UBERON:0001872;5.29e-09;5!UBERON:0002021;2.84e-08;5!UBERON:0002780;7.32e-08;41!UBERON:0001890;7.32e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,4.39e-21,20;UBERON:0001737,1.56e-20,9;UBERON:0002619,6.31e-19,22;UBERON:0000956,2.56e-16,25;UBERON:0000203,2.56e-16,25;UBERON:0001869,4.53e-16,32;UBERON:0001893,6.56e-15,34;UBERON:0002791,6.12e-14,32;UBERON:0007023,6.63e-14,114;UBERON:0003528,6.37e-13,34;UBERON:0002020,6.37e-13,34;UBERON:0002780,9.87e-12,41;UBERON:0001890,9.87e-12,41;UBERON:0003080,9.87e-12,41;UBERON:0006240,9.87e-12,41;UBERON:0011216,1.90e-11,223;UBERON:0000200,3.29e-11,6;UBERON:0001872,4.34e-09,5;UBERON:0001557,8.72e-09,19;UBERON:0002021,2.33e-08,5;UBERON:0000073,3.00e-08,53;UBERON:0002616,3.00e-08,53;UBERON:0008947,5.58e-08,38;UBERON:0003258,5.58e-08,38;UBERON:0003056,1.26e-07,61;UBERON:0001049,1.29e-07,56;UBERON:0005068,1.29e-07,56;UBERON:0006241,1.29e-07,56;UBERON:0007135,1.29e-07,56;UBERON:0004921,2.28e-07,118;UBERON:0000955,3.09e-07,68;UBERON:0006238,3.09e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.869079113764942,0,1.45990461090791,0,0.221729397462564,0.175669571386252,0.916853528483988,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0.596287222100115,0,0.694281003215189,0,0.419499436209906,0.825354125820202,0.208994966536811,0,0.35576626268671,0.33472061276467,0,0,0.24406205754817,2.94130464276695,0,2.23249320710199,0,1.57656072676651,1.53316637465883,0,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12952240071719,1.51726221070292,1.44606617930089,2.97793726377464,2.39667388501647,1.89816495288877,1.48314438976181,1.76599318612811,2.69323009862473,2.95262181849859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0.462985512576611,0.190254152234598,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0.381988425558278,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0.364182336013434,0.131124414959424,0,0,0,0,0,3.4120015221269,2.2112181685947,1.51141141271498,1.54227252690289,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,1.77449884830381,0.141405431953713,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54008299268659,0,0.842391534340376,0,0,17.5444133963047,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0.37428108081644,0.146508179271894,0.36408156524854,0,0,0.95497793895076,0,2.15012491469462,0.994147647766298,0.281338832821026,0,0,0,0.19924798825107,0.828851746593443,0,0,0,0,0,3.40140231883657,0,1.479651084554,0,0,1.93866549219044,1.39152147242777,0,0,0,0,0.1137934482855,0,0.472775363535873,0,1.74962768029953,1.90987494426621,0.885741385813839,0.120596438625408,0,0.331737779793674,0,2.63262476584767,8.27932322744325,0,3.30886111566327,0,0,0,0,0.638002319463839,0,0,0,0,0.831058409500782,0,0,0,0,0,0,0,0.141353071433941,3.46221823587346,0,3.09601475761687,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,1.97292201424695,0,0,0.252746318513952,0.150323419414493,0.414752765588989,0,0,0,0,0,0,0,0,0,0.698906672968121,0,1.16107597546902,2.41194746384412,1.88865551222381,1.64881328030313,0,1.35588444468319,0,0,2.40581024632339,3.51992488922645,0,2.98834192635094,0,0,13.629854943744,0,0.288109595976299,0,0.707082103850386,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0.558564802544508,0,2.15361907373044,0.399358000997982,0,0.223171457441873,0.53746777989381,0,0,0,0,0,0.0984274815147488,0,0,0.272406812223151,0,0,0,0,0,1.82248669974074,0,0.709251365692784,1.52118305591495,0,3.94432146532259,0,0.714695326373367,0,0,0,0,0,0,0,0,1.24643300672138,0,0,0.258565912723101,0.13223260174269,1.88195521672762,0,0.533937062838473,1.88645166119599,0.414239055347196,0.496166021811951,0,0.243585196761792,0,0.544017803369474,0,0,0,0,0,2.19647276823534,5.00763722825999,0,0.110929051536852,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14775308455192,0,0,0,0,0,0,0,0.320075189082423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66995985250795,4.25089728976755,2.87340946302872,1.64093091392604,0.252071696221718,1.52145955421279,1.77623210195036,0,0.0981477185010256,0,0,0,0,0,2.3869946653953,0.601682626794058,0,0,0,0,0,2.43135304626221,6.24862478891078,3.72036233702131,2.60004821795018,0,0,0.496211178389294,0,0.127762427639595,0,0,0.606965604236632,0.91064876540519,0.354809480650555,0,0,0.135939465953663,2.43359262182542,0,0,3.53218917827313,0.157115589916002,6.44625975621715,0,0,0,1.1436247068265,0,0,1.04314963381548,2.40513409419076,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,2.3196288626764,0.971421986118279,0,0,2.14056163399623,0,0,0,1.23478652972711,0.218559560503957,0,6.86415300910935,0,0,0,0,0,0.469919589899268,0.644578879735772,0,0,0,0,1.46067277649303,0,0.143339583151451,0,1.42782129400921,0,0,0,0,0,0,0.109265571963696,0,0.101988829741982,0.534434810531121,0.275684698604535,0,0.378893491091197,0,0,0.103432995861895,0.639701945702943,0.476128862927481,0,0.124149428591716,0,0,0.808468755832877,0,0,0.202056159043763,0.358611026963382,0.665320713092027,0,0,1.9307228228694,0,7.03922827210363,2.2003459952916,1.22068853494722,1.99727032255654,0,0 | |||
|short_description=p2@uc003jsd.1 | |||
}} |
Revision as of 05:33, 22 January 2014
Short description: | p2@uc003jsd.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc003jsd.1_5end |
Coexpression cluster: | C4508_cervical_acute_gastric_medial_gall_bile_large |
Association with transcript: | 239bp_to_uc003jsd.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 3.85e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
neocortex | 4.39e-21 | 20 |
larynx | 1.56e-20 | 9 |
regional part of cerebral cortex | 6.31e-19 | 22 |
cerebral cortex | 2.56e-16 | 25 |
pallium | 2.56e-16 | 25 |
cerebral hemisphere | 4.53e-16 | 32 |
telencephalon | 6.56e-15 | 34 |
regional part of telencephalon | 6.12e-14 | 32 |
adult organism | 6.63e-14 | 114 |
brain grey matter | 6.37e-13 | 34 |
gray matter | 6.37e-13 | 34 |
regional part of forebrain | 9.87e-12 | 41 |
forebrain | 9.87e-12 | 41 |
anterior neural tube | 9.87e-12 | 41 |
future forebrain | 9.87e-12 | 41 |
organ system subdivision | 1.90e-11 | 223 |
gyrus | 3.29e-11 | 6 |
parietal lobe | 4.34e-09 | 5 |
upper respiratory tract | 8.72e-09 | 19 |
occipital lobe | 2.33e-08 | 5 |
regional part of nervous system | 3.00e-08 | 53 |
regional part of brain | 3.00e-08 | 53 |
respiratory primordium | 5.58e-08 | 38 |
endoderm of foregut | 5.58e-08 | 38 |
pre-chordal neural plate | 1.26e-07 | 61 |
neural tube | 1.29e-07 | 56 |
neural rod | 1.29e-07 | 56 |
future spinal cord | 1.29e-07 | 56 |
neural keel | 1.29e-07 | 56 |
subdivision of digestive tract | 2.28e-07 | 118 |
brain | 3.09e-07 | 68 |
future brain | 3.09e-07 | 68 |