FF:13469-144I4: Difference between revisions
From FANTOM5_SSTAR
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|datafreeze_phase=2 | |datafreeze_phase=2 | ||
|def= | |def= | ||
|donor= control donor1 | |||
|expression_enrichment_score=chr12:66218255..66218304,+!p3@HMGA2!1.92!212.53!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!1.84!171.16!ZFPM2;;chr10:131762504..131762555,-!p1@EBF3!1.81!64.19!EBF3;;chr1:170633348..170633399,+!p2@PRRX1!1.72!69.89!PRRX1;;chr12:66218212..66218244,+!p5@HMGA2!1.68!67.04!HMGA2;;chr12:81110684..81110700,+!p1@MYF5!1.68!47.07!MYF5;;chr1:170633262..170633285,+!p3@PRRX1!1.64!48.50!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.58!164.03!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!1.57!255.32!NR2F2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.66!ZBED1;;chr1:170632285..170632309,+!p1@PRRX1!1.53!37.09!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!1.45!101.27!SIX1;;chr8:106330696..106330719,+!p2@ZFPM2!1.45!34.23!ZFPM2;;chr1:170632723..170632739,+!p8@PRRX1!1.40!24.25!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!1.39!29.95!NFATC2;;chr3:147127142..147127168,+!p1@ZIC1!1.38!22.82!ZIC1;;chr12:66218183..66218209,+!p4@HMGA2!1.36!41.36!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.35!32.81!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.34!57.05!TWIST1;;chr8:49833948..49833973,-!p2@SNAI2!1.31!119.82!SNAI2;;chr8:67525443..67525459,-!p2@MYBL1!1.31!28.53!MYBL1;;chr7:14028488..14028516,-!p2@ETV1!1.31!21.40!ETV1;;chr18:53068911..53068935,-!p4@TCF4!1.30!21.40!TCF4;;chr8:49833978..49833996,-!p1@SNAI2!1.29!372.28!SNAI2;;chr16:86600426..86600441,+!p1@FOXC2!1.29!45.64!FOXC2;;chr2:119605214..119605230,-!p1@EN1!1.29!18.54!EN1;;chr15:96874012..96874042,+!p2@NR2F2!1.27!154.05!NR2F2;;chr2:5832508..5832524,+!p1@SOX11!1.26!17.12!SOX11;;chr1:170633058..170633084,+!p5@PRRX1!1.26!17.12!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.24!28.53!DRAP1;;chr4:26322267..26322334,+!p3@RBPJ!1.22!37.09!RBPJ;;chr19:13134772..13134822,+!p2@NFIX!1.22!22.82!NFIX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.22!15.69!HOXC5;;chr2:19558373..19558392,-!p1@OSR1!1.20!39.94!OSR1;;chr5:321810..321877,+!p1@AHRR!1.19!45.64!AHRR;;chr6:34204921..34204939,+!p3@HMGA1!1.18!415.07!HMGA1;;chr8:106330543..106330554,+!p4@ZFPM2!1.18!14.26!ZFPM2;;chr12:66218904..66218913,+!p11@HMGA2!1.18!14.26!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.16!18.54!HOXB7;;chr12:66218443..66218461,+!p8@HMGA2!1.16!17.12!HMGA2;;chr15:96873921..96873946,+!p1@NR2F2!1.15!368.00!NR2F2;;chr22:19748231..19748317,+!p1@TBX1!1.14!12.84!TBX1;;chr4:111558135..111558198,-!p2@PITX2!1.14!12.84!PITX2;;chr15:83953397..83953425,-!p1@BNC1!1.13!14.26!BNC1;;chr17:46675420..46675465,-!p3@HOXB6!1.13!14.26!HOXB6;;chr16:54320617..54320643,-!p3@IRX3!1.12!15.69!IRX3;;chr1:170632959..170632987,+!p4@PRRX1!1.10!12.84!PRRX1;;chr3:21792585..21792625,-!p2@ZNF385D!1.10!12.84!ZNF385D;;chr16:86612320..86612394,+!p1@FOXL1!1.09!11.41!FOXL1;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.41!PKNOX2;;chr7:27224842..27224872,-!p1@HOXA11!1.09!11.41!HOXA11;;chr1:170632683..170632696,+!p12@PRRX1!1.09!11.41!PRRX1;;chr12:96588143..96588185,+!p1@ELK3!1.08!135.51!ELK3;;chr4:26322419..26322479,+!p2@RBPJ!1.08!132.65!RBPJ;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.12!TCF12;;chr16:54320646..54320672,-!p2@IRX3!1.05!15.69!IRX3;;chr17:46622440..46622477,-!p5@HOXB2!1.05!11.41!HOXB2;;chr12:27485823..27485868,+!p2@ARNTL2!1.04!41.36!ARNTL2;;chr5:92918894..92918912,+!p2@NR2F1!1.04!32.81!NR2F1;;chr7:27224795..27224840,-!p2@HOXA11!1.04!9.98!HOXA11;;chr12:66218469..66218477,+!p16@HMGA2!1.04!9.98!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.03!92.71!HMGA2;;chr19:23299814..23299844,+!p1@ZNF730!1.01!11.41!ZNF730;;chr11:65686732..65686756,+!p2@DRAP1!1.00!38.51!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!1.00!22.82!TWIST1;;chr12:27485762..27485776,+!p3@ARNTL2!0.99!24.25!ARNTL2;;chr15:96876966..96877017,+!p12@NR2F2!0.99!12.84!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.99!12.84!SATB2;;chr12:115121962..115121987,-!p1@TBX3!0.98!74.17!TBX3;;chr2:200323414..200323455,-!p1@SATB2!0.98!18.54!SATB2;;chr12:66218573..66218596,+!p7@HMGA2!0.98!12.84!HMGA2;;chr17:46622205..46622218,-!p3@HOXB2!0.98!9.98!HOXB2;;chr17:46622229..46622257,-!p6@HOXB2!0.98!9.98!HOXB2;;chr12:54378923..54378966,+!p1@HOXC10!0.98!8.56!HOXC10;;chr1:40105299..40105326,-!p1@HEYL!0.98!8.56!HEYL;;chr2:223163706..223163730,-!p1@PAX3!0.98!8.56!PAX3;;chr3:147111198..147111225,+!p4@ZIC1!0.98!8.56!ZIC1;;chr12:27485785..27485816,+!p1@ARNTL2!0.97!59.91!ARNTL2;;chr17:46622114..46622138,-!p4@HOXB2!0.97!12.84!HOXB2;;chr11:65667884..65667895,-!p2@FOSL1!0.93!29.95!FOSL1;;chr6:45390025..45390076,+!p2@RUNX2!0.93!18.54!RUNX2;;chr19:13136130..13136165,+!p6@NFIX!0.93!9.98!NFIX;;chr5:92918919..92918942,+!p1@NR2F1!0.92!34.23!NR2F1;;chr8:67525473..67525518,-!p1@MYBL1!0.92!17.12!MYBL1;;chr3:71114066..71114114,-!p1@FOXP1!0.91!151.20!FOXP1;;chr6:34204973..34204990,+!p4@HMGA1!0.91!98.42!HMGA1;;chr12:27485889..27485900,+!p4@ARNTL2!0.91!8.56!ARNTL2;;chr12:54366975..54367001,+!p1@HOXC11!0.91!7.13!HOXC11;;chr12:54379029..54379057,+!p2@HOXC10!0.91!7.13!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.91!7.13!HOXC10;;chr12:66218420..66218439,+!p12@HMGA2!0.91!7.13!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!0.91!7.13!RFX8;;chr2:119605253..119605264,-!p5@EN1!0.91!7.13!EN1;;chr16:86600870..86600921,+!p2@FOXC2!0.91!7.13!FOXC2;;chr19:13135582..13135600,+!p3@NFIX!0.91!7.13!NFIX;;chr1:170632762..170632786,+!p13@PRRX1!0.91!7.13!PRRX1;;chr17:38256799..38256815,-!p3@NR1D1!0.90!12.84!NR1D1;;chr5:72744594..72744609,-!p1@FOXD1!0.89!32.81!FOXD1;;chr15:96874244..96874259,+!p5@NR2F2!0.89!17.12!NR2F2;;chr3:178789522..178789564,-!p2@ZMAT3!0.88!51.35!ZMAT3;;chr8:77593474..77593612,+!p1@ZFHX4!0.87!28.53!ZFHX4;;chr2:187350951..187350962,+!p2@ZC3H15!0.87!15.69!ZC3H15;;chr15:96873892..96873919,+!p4@NR2F2!0.86!64.19!NR2F2;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.69!TOX2;;chr10:31607702..31607755,+!p3@ZEB1!0.85!7.13!ZEB1;;chr2:238536207..238536290,+!p2@LRRFIP1!0.84!61.33!LRRFIP1;;chr5:133450365..133450444,+!p1@TCF7!0.84!28.53!TCF7;;chr8:67525524..67525543,-!p3@MYBL1!0.84!9.98!MYBL1;;chr15:96874927..96874938,+!p8@NR2F2!0.83!12.84!NR2F2;;chr7:27205106..27205134,-!p2@HOXA9!0.83!5.71!HOXA9;;chr11:125034605..125034636,+!p2@PKNOX2!0.83!5.71!PKNOX2;;chr11:17741254..17741282,+!p2@MYOD1!0.83!5.71!MYOD1;;chr12:115122318..115122331,-!p2@TBX3!0.83!5.71!TBX3;;chr12:54366949..54366973,+!p3@HOXC11!0.83!5.71!HOXC11;;chr12:54402745..54402788,+!p1@HOXC8!0.83!5.71!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.83!5.71!HOXC5;;chr12:66218923..66218934,+!p14@HMGA2!0.83!5.71!HMGA2;;chr1:170632310..170632321,+!p15@PRRX1!0.83!5.71!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.83!5.71!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.83!5.71!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.83!5.71!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.83!5.71!PRRX1;;chr2:102091514..102091528,-!p6@RFX8!0.83!5.71!RFX8;;chr3:147127177..147127194,+!p2@ZIC1!0.83!5.71!ZIC1;;chr3:21792682..21792720,-!p1@ZNF385D!0.83!5.71!ZNF385D;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.71!BNC2;;chr20:42543441..42543497,+!p1@TOX2!0.82!27.10!TOX2;;chr16:54320675..54320715,-!p1@IRX3!0.82!12.84!IRX3;;chr8:116681150..116681164,-!p5@TRPS1!0.82!11.41!TRPS1;;chr6:45390002..45390023,+!p6@RUNX2!0.82!9.98!RUNX2;;chr7:14029312..14029325,-!p4@ETV1!0.82!7.13!ETV1;;chr6:34205372..34205412,+!p5@HMGA1!0.81!29.95!HMGA1;;chr14:73360799..73360817,-!p1@DPF3!0.81!19.97!DPF3;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.54!TWIST2;;chr12:2986206..2986258,-!p2@FOXM1!0.80!34.23!FOXM1;;chr14:62162285..62162296,+!p3@HIF1A!0.80!29.95!HIF1A;;chr15:96874216..96874236,+!p13@NR2F2!0.80!8.56!NR2F2;;chr4:81118647..81118666,+!p1@PRDM8!0.80!7.13!PRDM8;;chr12:66218152..66218174,+!p10@HMGA2!0.80!5.71!HMGA2;;chr3:114343768..114343822,-!p1@ZBTB20!0.79!24.25!ZBTB20;;chr12:77459306..77459365,-!p1@E2F7!0.78!68.47!E2F7;;chr3:14989024..14989041,+!p3@NR2C2!0.78!7.13!NR2C2;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.53!ETV1;;chr18:42260059..42260132,+!p1@SETBP1!0.77!8.56!SETBP1;;chr3:71631382..71631413,-!p20@FOXP1!0.77!5.71!FOXP1;;chr4:81105027..81105039,+!p3@PRDM8!0.77!5.71!PRDM8;;chr5:137801160..137801176,+!p1@EGR1!0.76!522.05!EGR1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.78!FOSL1;;chr17:46622070..46622109,-!p1@HOXB2!0.76!11.41!HOXB2;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.56!CREB3L1;;chr12:115122005..115122016,-!p3@TBX3!0.76!5.71!TBX3;;chr7:137686552..137686564,-!p9@CREB3L2!0.75!7.13!CREB3L2;;chr5:178368186..178368238,+!p1@ZNF454!0.74!8.56!ZNF454;;chr14:62162224..62162254,+!p1@HIF1A!0.73!717.46!HIF1A;;chr4:57774042..57774114,+!p1@REST!0.73!118.39!REST;;chr1:158979792..158979814,+!p2@IFI16!0.73!47.07!IFI16;;chr2:172967621..172967637,-!p1@DLX2!0.73!12.84!DLX2;;chr12:96588368..96588394,+!p3@ELK3!0.73!12.84!ELK3;;chr15:96874063..96874074,+!p10@NR2F2!0.73!8.56!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.73!5.71!DRAP1;;chr11:65687158..65687216,+!p4@DRAP1!0.72!27.10!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.72!24.25!CREB3L1;;chr1:14075865..14075896,+!p3@PRDM2!0.72!19.97!PRDM2;;chr21:36260343..36260402,-!p6@RUNX1!0.72!7.13!RUNX1;;chr1:170632028..170632043,+!p20@PRRX1!0.72!4.28!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.28!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.72!4.28!PRRX1;;chr21:36421401..36421414,-!p16@RUNX1!0.72!4.28!RUNX1;;chr11:125034586..125034604,+!p3@PKNOX2!0.72!4.28!PKNOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.72!4.28!CREB3L1;;chr15:96880438..96880445,+!p23@NR2F2!0.72!4.28!NR2F2;;chr17:46682321..46682362,-!p1@HOXB6!0.72!4.28!HOXB6;;chr7:14029034..14029087,-!p5@ETV1!0.72!4.28!ETV1;;chr7:27192185..27192209,-!p1@HOXA3!0.72!4.28!HOXA3;;chr7:27224911..27224922,-!p5@HOXA11!0.72!4.28!HOXA11;;chr2:102091566..102091581,-!p1@RFX8!0.72!4.28!RFX8;;chr2:172949484..172949522,+!p1@DLX1!0.72!4.28!DLX1;;chr2:45236540..45236577,-!p1@SIX2!0.72!4.28!SIX2;;chr4:26323764..26323821,+!p15@RBPJ!0.72!4.28!RBPJ;;chr13:74708029..74708077,-!p2@KLF12!0.71!12.84!KLF12;;chr12:124873852..124873881,-!p3@NCOR2!0.70!27.10!NCOR2;;chr13:45151509..45151539,-!p6@TSC22D1!0.70!7.13!TSC22D1;;chr19:49864746..49864780,-!p2@TEAD2!0.70!5.71!TEAD2;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.71!HOXB2;;chr1:61548225..61548299,+!p1@NFIA!0.69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| |expression_enrichment_score=chr12:66218255..66218304,+!p3@HMGA2!1.92!212.53!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!1.84!171.16!ZFPM2;;chr10:131762504..131762555,-!p1@EBF3!1.81!64.19!EBF3;;chr1:170633348..170633399,+!p2@PRRX1!1.72!69.89!PRRX1;;chr12:66218212..66218244,+!p5@HMGA2!1.68!67.04!HMGA2;;chr12:81110684..81110700,+!p1@MYF5!1.68!47.07!MYF5;;chr1:170633262..170633285,+!p3@PRRX1!1.64!48.50!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.58!164.03!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!1.57!255.32!NR2F2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.66!ZBED1;;chr1:170632285..170632309,+!p1@PRRX1!1.53!37.09!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!1.45!101.27!SIX1;;chr8:106330696..106330719,+!p2@ZFPM2!1.45!34.23!ZFPM2;;chr1:170632723..170632739,+!p8@PRRX1!1.40!24.25!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!1.39!29.95!NFATC2;;chr3:147127142..147127168,+!p1@ZIC1!1.38!22.82!ZIC1;;chr12:66218183..66218209,+!p4@HMGA2!1.36!41.36!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.35!32.81!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.34!57.05!TWIST1;;chr8:49833948..49833973,-!p2@SNAI2!1.31!119.82!SNAI2;;chr8:67525443..67525459,-!p2@MYBL1!1.31!28.53!MYBL1;;chr7:14028488..14028516,-!p2@ETV1!1.31!21.40!ETV1;;chr18:53068911..53068935,-!p4@TCF4!1.30!21.40!TCF4;;chr8:49833978..49833996,-!p1@SNAI2!1.29!372.28!SNAI2;;chr16:86600426..86600441,+!p1@FOXC2!1.29!45.64!FOXC2;;chr2:119605214..119605230,-!p1@EN1!1.29!18.54!EN1;;chr15:96874012..96874042,+!p2@NR2F2!1.27!154.05!NR2F2;;chr2:5832508..5832524,+!p1@SOX11!1.26!17.12!SOX11;;chr1:170633058..170633084,+!p5@PRRX1!1.26!17.12!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.24!28.53!DRAP1;;chr4:26322267..26322334,+!p3@RBPJ!1.22!37.09!RBPJ;;chr19:13134772..13134822,+!p2@NFIX!1.22!22.82!NFIX;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.22!15.69!HOXC5;;chr2:19558373..19558392,-!p1@OSR1!1.20!39.94!OSR1;;chr5:321810..321877,+!p1@AHRR!1.19!45.64!AHRR;;chr6:34204921..34204939,+!p3@HMGA1!1.18!415.07!HMGA1;;chr8:106330543..106330554,+!p4@ZFPM2!1.18!14.26!ZFPM2;;chr12:66218904..66218913,+!p11@HMGA2!1.18!14.26!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.16!18.54!HOXB7;;chr12:66218443..66218461,+!p8@HMGA2!1.16!17.12!HMGA2;;chr15:96873921..96873946,+!p1@NR2F2!1.15!368.00!NR2F2;;chr22:19748231..19748317,+!p1@TBX1!1.14!12.84!TBX1;;chr4:111558135..111558198,-!p2@PITX2!1.14!12.84!PITX2;;chr15:83953397..83953425,-!p1@BNC1!1.13!14.26!BNC1;;chr17:46675420..46675465,-!p3@HOXB6!1.13!14.26!HOXB6;;chr16:54320617..54320643,-!p3@IRX3!1.12!15.69!IRX3;;chr1:170632959..170632987,+!p4@PRRX1!1.10!12.84!PRRX1;;chr3:21792585..21792625,-!p2@ZNF385D!1.10!12.84!ZNF385D;;chr16:86612320..86612394,+!p1@FOXL1!1.09!11.41!FOXL1;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.41!PKNOX2;;chr7:27224842..27224872,-!p1@HOXA11!1.09!11.41!HOXA11;;chr1:170632683..170632696,+!p12@PRRX1!1.09!11.41!PRRX1;;chr12:96588143..96588185,+!p1@ELK3!1.08!135.51!ELK3;;chr4:26322419..26322479,+!p2@RBPJ!1.08!132.65!RBPJ;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.12!TCF12;;chr16:54320646..54320672,-!p2@IRX3!1.05!15.69!IRX3;;chr17:46622440..46622477,-!p5@HOXB2!1.05!11.41!HOXB2;;chr12:27485823..27485868,+!p2@ARNTL2!1.04!41.36!ARNTL2;;chr5:92918894..92918912,+!p2@NR2F1!1.04!32.81!NR2F1;;chr7:27224795..27224840,-!p2@HOXA11!1.04!9.98!HOXA11;;chr12:66218469..66218477,+!p16@HMGA2!1.04!9.98!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.03!92.71!HMGA2;;chr19:23299814..23299844,+!p1@ZNF730!1.01!11.41!ZNF730;;chr11:65686732..65686756,+!p2@DRAP1!1.00!38.51!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!1.00!22.82!TWIST1;;chr12:27485762..27485776,+!p3@ARNTL2!0.99!24.25!ARNTL2;;chr15:96876966..96877017,+!p12@NR2F2!0.99!12.84!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.99!12.84!SATB2;;chr12:115121962..115121987,-!p1@TBX3!0.98!74.17!TBX3;;chr2:200323414..200323455,-!p1@SATB2!0.98!18.54!SATB2;;chr12:66218573..66218596,+!p7@HMGA2!0.98!12.84!HMGA2;;chr17:46622205..46622218,-!p3@HOXB2!0.98!9.98!HOXB2;;chr17:46622229..46622257,-!p6@HOXB2!0.98!9.98!HOXB2;;chr12:54378923..54378966,+!p1@HOXC10!0.98!8.56!HOXC10;;chr1:40105299..40105326,-!p1@HEYL!0.98!8.56!HEYL;;chr2:223163706..223163730,-!p1@PAX3!0.98!8.56!PAX3;;chr3:147111198..147111225,+!p4@ZIC1!0.98!8.56!ZIC1;;chr12:27485785..27485816,+!p1@ARNTL2!0.97!59.91!ARNTL2;;chr17:46622114..46622138,-!p4@HOXB2!0.97!12.84!HOXB2;;chr11:65667884..65667895,-!p2@FOSL1!0.93!29.95!FOSL1;;chr6:45390025..45390076,+!p2@RUNX2!0.93!18.54!RUNX2;;chr19:13136130..13136165,+!p6@NFIX!0.93!9.98!NFIX;;chr5:92918919..92918942,+!p1@NR2F1!0.92!34.23!NR2F1;;chr8:67525473..67525518,-!p1@MYBL1!0.92!17.12!MYBL1;;chr3:71114066..71114114,-!p1@FOXP1!0.91!151.20!FOXP1;;chr6:34204973..34204990,+!p4@HMGA1!0.91!98.42!HMGA1;;chr12:27485889..27485900,+!p4@ARNTL2!0.91!8.56!ARNTL2;;chr12:54366975..54367001,+!p1@HOXC11!0.91!7.13!HOXC11;;chr12:54379029..54379057,+!p2@HOXC10!0.91!7.13!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.91!7.13!HOXC10;;chr12:66218420..66218439,+!p12@HMGA2!0.91!7.13!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!0.91!7.13!RFX8;;chr2:119605253..119605264,-!p5@EN1!0.91!7.13!EN1;;chr16:86600870..86600921,+!p2@FOXC2!0.91!7.13!FOXC2;;chr19:13135582..13135600,+!p3@NFIX!0.91!7.13!NFIX;;chr1:170632762..170632786,+!p13@PRRX1!0.91!7.13!PRRX1;;chr17:38256799..38256815,-!p3@NR1D1!0.90!12.84!NR1D1;;chr5:72744594..72744609,-!p1@FOXD1!0.89!32.81!FOXD1;;chr15:96874244..96874259,+!p5@NR2F2!0.89!17.12!NR2F2;;chr3:178789522..178789564,-!p2@ZMAT3!0.88!51.35!ZMAT3;;chr8:77593474..77593612,+!p1@ZFHX4!0.87!28.53!ZFHX4;;chr2:187350951..187350962,+!p2@ZC3H15!0.87!15.69!ZC3H15;;chr15:96873892..96873919,+!p4@NR2F2!0.86!64.19!NR2F2;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.69!TOX2;;chr10:31607702..31607755,+!p3@ZEB1!0.85!7.13!ZEB1;;chr2:238536207..238536290,+!p2@LRRFIP1!0.84!61.33!LRRFIP1;;chr5:133450365..133450444,+!p1@TCF7!0.84!28.53!TCF7;;chr8:67525524..67525543,-!p3@MYBL1!0.84!9.98!MYBL1;;chr15:96874927..96874938,+!p8@NR2F2!0.83!12.84!NR2F2;;chr7:27205106..27205134,-!p2@HOXA9!0.83!5.71!HOXA9;;chr11:125034605..125034636,+!p2@PKNOX2!0.83!5.71!PKNOX2;;chr11:17741254..17741282,+!p2@MYOD1!0.83!5.71!MYOD1;;chr12:115122318..115122331,-!p2@TBX3!0.83!5.71!TBX3;;chr12:54366949..54366973,+!p3@HOXC11!0.83!5.71!HOXC11;;chr12:54402745..54402788,+!p1@HOXC8!0.83!5.71!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.83!5.71!HOXC5;;chr12:66218923..66218934,+!p14@HMGA2!0.83!5.71!HMGA2;;chr1:170632310..170632321,+!p15@PRRX1!0.83!5.71!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.83!5.71!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.83!5.71!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.83!5.71!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.83!5.71!PRRX1;;chr2:102091514..102091528,-!p6@RFX8!0.83!5.71!RFX8;;chr3:147127177..147127194,+!p2@ZIC1!0.83!5.71!ZIC1;;chr3:21792682..21792720,-!p1@ZNF385D!0.83!5.71!ZNF385D;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.71!BNC2;;chr20:42543441..42543497,+!p1@TOX2!0.82!27.10!TOX2;;chr16:54320675..54320715,-!p1@IRX3!0.82!12.84!IRX3;;chr8:116681150..116681164,-!p5@TRPS1!0.82!11.41!TRPS1;;chr6:45390002..45390023,+!p6@RUNX2!0.82!9.98!RUNX2;;chr7:14029312..14029325,-!p4@ETV1!0.82!7.13!ETV1;;chr6:34205372..34205412,+!p5@HMGA1!0.81!29.95!HMGA1;;chr14:73360799..73360817,-!p1@DPF3!0.81!19.97!DPF3;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.54!TWIST2;;chr12:2986206..2986258,-!p2@FOXM1!0.80!34.23!FOXM1;;chr14:62162285..62162296,+!p3@HIF1A!0.80!29.95!HIF1A;;chr15:96874216..96874236,+!p13@NR2F2!0.80!8.56!NR2F2;;chr4:81118647..81118666,+!p1@PRDM8!0.80!7.13!PRDM8;;chr12:66218152..66218174,+!p10@HMGA2!0.80!5.71!HMGA2;;chr3:114343768..114343822,-!p1@ZBTB20!0.79!24.25!ZBTB20;;chr12:77459306..77459365,-!p1@E2F7!0.78!68.47!E2F7;;chr3:14989024..14989041,+!p3@NR2C2!0.78!7.13!NR2C2;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.53!ETV1;;chr18:42260059..42260132,+!p1@SETBP1!0.77!8.56!SETBP1;;chr3:71631382..71631413,-!p20@FOXP1!0.77!5.71!FOXP1;;chr4:81105027..81105039,+!p3@PRDM8!0.77!5.71!PRDM8;;chr5:137801160..137801176,+!p1@EGR1!0.76!522.05!EGR1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.78!FOSL1;;chr17:46622070..46622109,-!p1@HOXB2!0.76!11.41!HOXB2;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.56!CREB3L1;;chr12:115122005..115122016,-!p3@TBX3!0.76!5.71!TBX3;;chr7:137686552..137686564,-!p9@CREB3L2!0.75!7.13!CREB3L2;;chr5:178368186..178368238,+!p1@ZNF454!0.74!8.56!ZNF454;;chr14:62162224..62162254,+!p1@HIF1A!0.73!717.46!HIF1A;;chr4:57774042..57774114,+!p1@REST!0.73!118.39!REST;;chr1:158979792..158979814,+!p2@IFI16!0.73!47.07!IFI16;;chr2:172967621..172967637,-!p1@DLX2!0.73!12.84!DLX2;;chr12:96588368..96588394,+!p3@ELK3!0.73!12.84!ELK3;;chr15:96874063..96874074,+!p10@NR2F2!0.73!8.56!NR2F2;;chr11:65687222..65687240,+!p7@DRAP1!0.73!5.71!DRAP1;;chr11:65687158..65687216,+!p4@DRAP1!0.72!27.10!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.72!24.25!CREB3L1;;chr1:14075865..14075896,+!p3@PRDM2!0.72!19.97!PRDM2;;chr21:36260343..36260402,-!p6@RUNX1!0.72!7.13!RUNX1;;chr1:170632028..170632043,+!p20@PRRX1!0.72!4.28!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.28!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.72!4.28!PRRX1;;chr21:36421401..36421414,-!p16@RUNX1!0.72!4.28!RUNX1;;chr11:125034586..125034604,+!p3@PKNOX2!0.72!4.28!PKNOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.72!4.28!CREB3L1;;chr15:96880438..96880445,+!p23@NR2F2!0.72!4.28!NR2F2;;chr17:46682321..46682362,-!p1@HOXB6!0.72!4.28!HOXB6;;chr7:14029034..14029087,-!p5@ETV1!0.72!4.28!ETV1;;chr7:27192185..27192209,-!p1@HOXA3!0.72!4.28!HOXA3;;chr7:27224911..27224922,-!p5@HOXA11!0.72!4.28!HOXA11;;chr2:102091566..102091581,-!p1@RFX8!0.72!4.28!RFX8;;chr2:172949484..172949522,+!p1@DLX1!0.72!4.28!DLX1;;chr2:45236540..45236577,-!p1@SIX2!0.72!4.28!SIX2;;chr4:26323764..26323821,+!p15@RBPJ!0.72!4.28!RBPJ;;chr13:74708029..74708077,-!p2@KLF12!0.71!12.84!KLF12;;chr12:124873852..124873881,-!p3@NCOR2!0.70!27.10!NCOR2;;chr13:45151509..45151539,-!p6@TSC22D1!0.70!7.13!TSC22D1;;chr19:49864746..49864780,-!p2@TEAD2!0.70!5.71!TEAD2;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.71!HOXB2;;chr1:61548225..61548299,+!p1@NFIA!0.69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| ||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000515 | |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000515 | ||
Line 46: | Line 47: | ||
|library_id=CNhs13847 | |library_id=CNhs13847 | ||
|library_id_phase_based=2:CNhs13847 | |library_id_phase_based=2:CNhs13847 | ||
|name=Myoblast differentiation to myotubes | |name=Myoblast differentiation to myotubes | ||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
Line 88: | Line 89: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|time= day00 | |||
|timecourse=human_Myoblast_differentiation_to_myotubes | |timecourse=human_Myoblast_differentiation_to_myotubes | ||
|top_motifs=TFDP1:1.89856963808;PAX8:1.62016126467;VSX1,2:1.43753377083;NKX2-1,4:1.22846100682;SPZ1:1.18059145387;PDX1:1.14822026271;TFAP4:1.14485598029;TFAP2{A,C}:1.13090384768;HOX{A4,D4}:1.06979267821;TLX1..3_NFIC{dimer}:1.00028470519;LEF1_TCF7_TCF7L1,2:0.983029651897;NFIX:0.948128957041;PAX1,9:0.875659511033;POU1F1:0.862905818614;ZNF384:0.848743210514;POU6F1:0.846853910981;SRF:0.832346461061;TEAD1:0.832306250879;CDC5L:0.820687826483;HOX{A5,B5}:0.782424058761;GATA4:0.772139480589;NKX3-1:0.765455634911;NR6A1:0.734802481342;ADNP_IRX_SIX_ZHX:0.732125282456;GZF1:0.72897881842;MYBL2:0.71952066963;XBP1:0.716073929717;E2F1..5:0.710803682466;GFI1B:0.704375221257;POU5F1:0.691620771953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.665219279213;HBP1_HMGB_SSRP1_UBTF:0.665056195728;TAL1_TCF{3,4,12}:0.658482192558;TFAP2B:0.623486279832;SOX17:0.620357185262;MZF1:0.59783807752;GFI1:0.58068627353;NR3C1:0.568003173838;FOXD3:0.560859237115;NKX6-1,2:0.549688802309;ZNF238:0.546832414535;NHLH1,2:0.546593169474;SOX{8,9,10}:0.495664512017;HOX{A6,A7,B6,B7}:0.482501432966;NKX2-3_NKX2-5:0.47123078206;RORA:0.46799258413;EGR1..3:0.46711387626;PAX4:0.462697580489;MTF1:0.457671437072;HIC1:0.450104679371;GTF2A1,2:0.437685443588;NFATC1..3:0.435298079314;POU3F1..4:0.427135015925;KLF4:0.424698064309;PRDM1:0.422927697481;LHX3,4:0.416455829932;AR:0.397898443029;SOX2:0.397594078796;NR5A1,2:0.376827138042;ZFP161:0.362087832062;PRRX1,2:0.361477353832;GCM1,2:0.349643398442;TBX4,5:0.342015462503;NFE2L2:0.3393949418;FOSL2:0.333070841417;GTF2I:0.328853581988;TFCP2:0.32800740858;AHR_ARNT_ARNT2:0.299346400358;FOS_FOS{B,L1}_JUN{B,D}:0.281339144432;MTE{core}:0.269890565055;ALX1:0.262769144462;MEF2{A,B,C,D}:0.259843546333;EN1,2:0.235520050447;EVI1:0.206112556071;HSF1,2:0.195215021301;RFX1:0.17602663817;JUN:0.172240188357;GLI1..3:0.158131296853;HOXA9_MEIS1:0.148273032364;DMAP1_NCOR{1,2}_SMARC:0.145240452296;NFIL3:0.144018051762;CDX1,2,4:0.139037031145;BACH2:0.138969408122;BREu{core}:0.130702007369;CUX2:0.130642108112;MED-1{core}:0.130297223201;PBX1:0.120190774644;HNF1A:0.117558380323;CREB1:0.116090436069;RUNX1..3:0.113843248645;NRF1:0.065002395393;MYFfamily:0.0518722862867;MAZ:0.0510232344968;PPARG:0.0316367669214;TBP:0.0270316961337;HES1:0.0167671469549;FOXA2:0.00370975662904;NFE2:0.000531981769745;ATF6:-0.00959715843629;ZBTB6:-0.0111879628477;STAT2,4,6:-0.0148607252273;ZNF148:-0.01628383406;REST:-0.023311300532;RXR{A,B,G}:-0.024701761489;HNF4A_NR2F1,2:-0.0253162679424;PATZ1:-0.0336231249589;ZNF143:-0.0374688883707;PAX3,7:-0.0550549728123;MYB:-0.059037618476;ZIC1..3:-0.066719414247;NANOG{mouse}:-0.0715307512227;NFE2L1:-0.0749399921209;RREB1:-0.078156650156;SMAD1..7,9:-0.0881781375427;PAX6:-0.103891217885;T:-0.104911737981;HLF:-0.105517317374;RFX2..5_RFXANK_RFXAP:-0.110460905229;PITX1..3:-0.114686070958;POU2F1..3:-0.1171092422;TGIF1:-0.129774230842;ONECUT1,2:-0.130720996106;FOXQ1:-0.133783999198;EBF1:-0.141004823111;GATA6:-0.142239157628;NFY{A,B,C}:-0.152213642602;ALX4:-0.15272455523;HAND1,2:-0.179424009605;STAT5{A,B}:-0.187073435079;RXRA_VDR{dimer}:-0.217261256712;TP53:-0.231773890931;SREBF1,2:-0.235577140498;ZBTB16:-0.237448427982;DBP:-0.249183474998;NR1H4:-0.249247022401;CEBPA,B_DDIT3:-0.257016707543;MAFB:-0.288689058761;CRX:-0.307177980075;XCPE1{core}:-0.327550089022;ZNF423:-0.346743001445;NFKB1_REL_RELA:-0.360679054645;FOXO1,3,4:-0.383384675623;HMGA1,2:-0.390455252776;ESRRA:-0.395060654534;OCT4_SOX2{dimer}:-0.396381445804;IKZF1:-0.421172704069;IKZF2:-0.429629454119;SPIB:-0.437721526994;NANOG:-0.446394329188;IRF1,2:-0.451106865018;IRF7:-0.456418872036;ESR1:-0.46954647759;ETS1,2:-0.491011315717;SOX5:-0.491558719608;FOX{F1,F2,J1}:-0.522369406268;PAX5:-0.522857863683;SPI1:-0.525478333858;NKX3-2:-0.548355791856;UFEwm:-0.550278224169;LMO2:-0.578799488183;PAX2:-0.61254460971;ATF5_CREB3:-0.619661934575;HMX1:-0.63255983154;bHLH_family:-0.637078557737;FOXL1:-0.648098744478;FOXP3:-0.654397225454;SP1:-0.655061070144;ATF2:-0.664965541517;ELK1,4_GABP{A,B1}:-0.66789876379;AIRE:-0.67910407151;ELF1,2,4:-0.7007750003;FOX{I1,J2}:-0.738753633407;FOX{D1,D2}:-0.740712898543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.747096089992;TLX2:-0.747542389551;ZEB1:-0.765725959467;ATF4:-0.768632370075;FOXN1:-0.771298445866;MYOD1:-0.827986121122;YY1:-0.833305591566;SNAI1..3:-0.868867124884;HIF1A:-0.887300714656;FOXP1:-0.909876929442;FOXM1:-0.962700056335;STAT1,3:-0.969337924819;BPTF:-0.970227966435;ARID5B:-0.970966808869;NKX2-2,8:-0.981137292406;TEF:-1.02228248004;TOPORS:-1.04138959857;RBPJ:-1.07822938386;EP300:-1.15783808773 | |top_motifs=TFDP1:1.89856963808;PAX8:1.62016126467;VSX1,2:1.43753377083;NKX2-1,4:1.22846100682;SPZ1:1.18059145387;PDX1:1.14822026271;TFAP4:1.14485598029;TFAP2{A,C}:1.13090384768;HOX{A4,D4}:1.06979267821;TLX1..3_NFIC{dimer}:1.00028470519;LEF1_TCF7_TCF7L1,2:0.983029651897;NFIX:0.948128957041;PAX1,9:0.875659511033;POU1F1:0.862905818614;ZNF384:0.848743210514;POU6F1:0.846853910981;SRF:0.832346461061;TEAD1:0.832306250879;CDC5L:0.820687826483;HOX{A5,B5}:0.782424058761;GATA4:0.772139480589;NKX3-1:0.765455634911;NR6A1:0.734802481342;ADNP_IRX_SIX_ZHX:0.732125282456;GZF1:0.72897881842;MYBL2:0.71952066963;XBP1:0.716073929717;E2F1..5:0.710803682466;GFI1B:0.704375221257;POU5F1:0.691620771953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.665219279213;HBP1_HMGB_SSRP1_UBTF:0.665056195728;TAL1_TCF{3,4,12}:0.658482192558;TFAP2B:0.623486279832;SOX17:0.620357185262;MZF1:0.59783807752;GFI1:0.58068627353;NR3C1:0.568003173838;FOXD3:0.560859237115;NKX6-1,2:0.549688802309;ZNF238:0.546832414535;NHLH1,2:0.546593169474;SOX{8,9,10}:0.495664512017;HOX{A6,A7,B6,B7}:0.482501432966;NKX2-3_NKX2-5:0.47123078206;RORA:0.46799258413;EGR1..3:0.46711387626;PAX4:0.462697580489;MTF1:0.457671437072;HIC1:0.450104679371;GTF2A1,2:0.437685443588;NFATC1..3:0.435298079314;POU3F1..4:0.427135015925;KLF4:0.424698064309;PRDM1:0.422927697481;LHX3,4:0.416455829932;AR:0.397898443029;SOX2:0.397594078796;NR5A1,2:0.376827138042;ZFP161:0.362087832062;PRRX1,2:0.361477353832;GCM1,2:0.349643398442;TBX4,5:0.342015462503;NFE2L2:0.3393949418;FOSL2:0.333070841417;GTF2I:0.328853581988;TFCP2:0.32800740858;AHR_ARNT_ARNT2:0.299346400358;FOS_FOS{B,L1}_JUN{B,D}:0.281339144432;MTE{core}:0.269890565055;ALX1:0.262769144462;MEF2{A,B,C,D}:0.259843546333;EN1,2:0.235520050447;EVI1:0.206112556071;HSF1,2:0.195215021301;RFX1:0.17602663817;JUN:0.172240188357;GLI1..3:0.158131296853;HOXA9_MEIS1:0.148273032364;DMAP1_NCOR{1,2}_SMARC:0.145240452296;NFIL3:0.144018051762;CDX1,2,4:0.139037031145;BACH2:0.138969408122;BREu{core}:0.130702007369;CUX2:0.130642108112;MED-1{core}:0.130297223201;PBX1:0.120190774644;HNF1A:0.117558380323;CREB1:0.116090436069;RUNX1..3:0.113843248645;NRF1:0.065002395393;MYFfamily:0.0518722862867;MAZ:0.0510232344968;PPARG:0.0316367669214;TBP:0.0270316961337;HES1:0.0167671469549;FOXA2:0.00370975662904;NFE2:0.000531981769745;ATF6:-0.00959715843629;ZBTB6:-0.0111879628477;STAT2,4,6:-0.0148607252273;ZNF148:-0.01628383406;REST:-0.023311300532;RXR{A,B,G}:-0.024701761489;HNF4A_NR2F1,2:-0.0253162679424;PATZ1:-0.0336231249589;ZNF143:-0.0374688883707;PAX3,7:-0.0550549728123;MYB:-0.059037618476;ZIC1..3:-0.066719414247;NANOG{mouse}:-0.0715307512227;NFE2L1:-0.0749399921209;RREB1:-0.078156650156;SMAD1..7,9:-0.0881781375427;PAX6:-0.103891217885;T:-0.104911737981;HLF:-0.105517317374;RFX2..5_RFXANK_RFXAP:-0.110460905229;PITX1..3:-0.114686070958;POU2F1..3:-0.1171092422;TGIF1:-0.129774230842;ONECUT1,2:-0.130720996106;FOXQ1:-0.133783999198;EBF1:-0.141004823111;GATA6:-0.142239157628;NFY{A,B,C}:-0.152213642602;ALX4:-0.15272455523;HAND1,2:-0.179424009605;STAT5{A,B}:-0.187073435079;RXRA_VDR{dimer}:-0.217261256712;TP53:-0.231773890931;SREBF1,2:-0.235577140498;ZBTB16:-0.237448427982;DBP:-0.249183474998;NR1H4:-0.249247022401;CEBPA,B_DDIT3:-0.257016707543;MAFB:-0.288689058761;CRX:-0.307177980075;XCPE1{core}:-0.327550089022;ZNF423:-0.346743001445;NFKB1_REL_RELA:-0.360679054645;FOXO1,3,4:-0.383384675623;HMGA1,2:-0.390455252776;ESRRA:-0.395060654534;OCT4_SOX2{dimer}:-0.396381445804;IKZF1:-0.421172704069;IKZF2:-0.429629454119;SPIB:-0.437721526994;NANOG:-0.446394329188;IRF1,2:-0.451106865018;IRF7:-0.456418872036;ESR1:-0.46954647759;ETS1,2:-0.491011315717;SOX5:-0.491558719608;FOX{F1,F2,J1}:-0.522369406268;PAX5:-0.522857863683;SPI1:-0.525478333858;NKX3-2:-0.548355791856;UFEwm:-0.550278224169;LMO2:-0.578799488183;PAX2:-0.61254460971;ATF5_CREB3:-0.619661934575;HMX1:-0.63255983154;bHLH_family:-0.637078557737;FOXL1:-0.648098744478;FOXP3:-0.654397225454;SP1:-0.655061070144;ATF2:-0.664965541517;ELK1,4_GABP{A,B1}:-0.66789876379;AIRE:-0.67910407151;ELF1,2,4:-0.7007750003;FOX{I1,J2}:-0.738753633407;FOX{D1,D2}:-0.740712898543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.747096089992;TLX2:-0.747542389551;ZEB1:-0.765725959467;ATF4:-0.768632370075;FOXN1:-0.771298445866;MYOD1:-0.827986121122;YY1:-0.833305591566;SNAI1..3:-0.868867124884;HIF1A:-0.887300714656;FOXP1:-0.909876929442;FOXM1:-0.962700056335;STAT1,3:-0.969337924819;BPTF:-0.970227966435;ARID5B:-0.970966808869;NKX2-2,8:-0.981137292406;TEF:-1.02228248004;TOPORS:-1.04138959857;RBPJ:-1.07822938386;EP300:-1.15783808773 | ||
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Revision as of 16:18, 9 January 2015
Name: | Myoblast differentiation to myotubes |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13847 |
Sample type: | time courses |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13847
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13847
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.741 |
10 | 10 | 0.149 |
100 | 100 | 0.0269 |
101 | 101 | 0.892 |
102 | 102 | 0.358 |
103 | 103 | 0.102 |
104 | 104 | 0.329 |
105 | 105 | 0.881 |
106 | 106 | 0.376 |
107 | 107 | 0.113 |
108 | 108 | 0.955 |
109 | 109 | 0.252 |
11 | 11 | 0.741 |
110 | 110 | 0.805 |
111 | 111 | 0.835 |
112 | 112 | 0.0881 |
113 | 113 | 0.388 |
114 | 114 | 0.752 |
115 | 115 | 0.102 |
116 | 116 | 0.547 |
117 | 117 | 0.0842 |
118 | 118 | 0.0107 |
119 | 119 | 0.865 |
12 | 12 | 0.46 |
120 | 120 | 0.396 |
121 | 121 | 1 |
122 | 122 | 0.477 |
123 | 123 | 0.451 |
124 | 124 | 0.286 |
125 | 125 | 0.554 |
126 | 126 | 0.934 |
127 | 127 | 0.864 |
128 | 128 | 0.666 |
129 | 129 | 0.534 |
13 | 13 | 0.0604 |
130 | 130 | 9.96202e-4 |
131 | 131 | 0.993 |
132 | 132 | 0.0717 |
133 | 133 | 0.743 |
134 | 134 | 0.546 |
135 | 135 | 0.388 |
136 | 136 | 0.112 |
137 | 137 | 0.974 |
138 | 138 | 0.929 |
139 | 139 | 0.0436 |
14 | 14 | 0.931 |
140 | 140 | 0.292 |
141 | 141 | 0.284 |
142 | 142 | 0.309 |
143 | 143 | 0.233 |
144 | 144 | 0.966 |
145 | 145 | 0.421 |
146 | 146 | 0.0881 |
147 | 147 | 0.0321 |
148 | 148 | 0.661 |
149 | 149 | 0.927 |
15 | 15 | 0.521 |
150 | 150 | 0.747 |
151 | 151 | 0.655 |
152 | 152 | 0.603 |
153 | 153 | 0.998 |
154 | 154 | 0.847 |
155 | 155 | 0.0792 |
156 | 156 | 0.468 |
157 | 157 | 0.193 |
158 | 158 | 0.806 |
159 | 159 | 0.804 |
16 | 16 | 0.841 |
160 | 160 | 0.433 |
161 | 161 | 0.0473 |
162 | 162 | 0.0733 |
163 | 163 | 0.658 |
164 | 164 | 0.0045 |
165 | 165 | 0.916 |
166 | 166 | 0.512 |
167 | 167 | 0.825 |
168 | 168 | 0.151 |
169 | 169 | 0.395 |
17 | 17 | 0.294 |
18 | 18 | 0.885 |
19 | 19 | 0.892 |
2 | 2 | 0.311 |
20 | 20 | 0.091 |
21 | 21 | 0.373 |
22 | 22 | 0.971 |
23 | 23 | 0.202 |
24 | 24 | 0.459 |
25 | 25 | 0.843 |
26 | 26 | 0.772 |
27 | 27 | 0.933 |
28 | 28 | 0.601 |
29 | 29 | 0.0254 |
3 | 3 | 0.131 |
30 | 30 | 0.214 |
31 | 31 | 0.544 |
32 | 32 | 0.994 |
33 | 33 | 0.227 |
34 | 34 | 0.679 |
35 | 35 | 0.578 |
36 | 36 | 0.134 |
37 | 37 | 0.0297 |
38 | 38 | 0.908 |
39 | 39 | 0.439 |
4 | 4 | 0.882 |
40 | 40 | 0.0264 |
41 | 41 | 0.399 |
42 | 42 | 0.723 |
43 | 43 | 0.966 |
44 | 44 | 0.0869 |
45 | 45 | 0.733 |
46 | 46 | 0.629 |
47 | 47 | 0.171 |
48 | 48 | 0.119 |
49 | 49 | 0.786 |
5 | 5 | 0.509 |
50 | 50 | 0.661 |
51 | 51 | 0.582 |
52 | 52 | 0.982 |
53 | 53 | 0.449 |
54 | 54 | 0.279 |
55 | 55 | 0.0687 |
56 | 56 | 0.524 |
57 | 57 | 0.41 |
58 | 58 | 0.534 |
59 | 59 | 0.334 |
6 | 6 | 0.115 |
60 | 60 | 0.518 |
61 | 61 | 0.525 |
62 | 62 | 0.629 |
63 | 63 | 0.843 |
64 | 64 | 0.353 |
65 | 65 | 0.659 |
66 | 66 | 0.09 |
67 | 67 | 0.538 |
68 | 68 | 0.782 |
69 | 69 | 0.279 |
7 | 7 | 0.915 |
70 | 70 | 0.392 |
71 | 71 | 0.162 |
72 | 72 | 0.576 |
73 | 73 | 0.394 |
74 | 74 | 0.421 |
75 | 75 | 0.00537 |
76 | 76 | 0.328 |
77 | 77 | 0.575 |
78 | 78 | 0.0911 |
79 | 79 | 0.619 |
8 | 8 | 0.972 |
80 | 80 | 0.0605 |
81 | 81 | 0.861 |
82 | 82 | 0.205 |
83 | 83 | 0.554 |
84 | 84 | 0.541 |
85 | 85 | 0.426 |
86 | 86 | 0.942 |
87 | 87 | 0.764 |
88 | 88 | 0.793 |
89 | 89 | 0.965 |
9 | 9 | 0.0834 |
90 | 90 | 0.0251 |
91 | 91 | 0.921 |
92 | 92 | 0.695 |
93 | 93 | 0.446 |
94 | 94 | 0.462 |
95 | 95 | 0.268 |
96 | 96 | 0.387 |
97 | 97 | 0.206 |
98 | 98 | 0.128 |
99 | 99 | 0.49 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13847
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000210 human sample
FF:0200006 myoblast differentiation to myotubes, control sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000737 (striated muscle cell)
0000228 (multinucleate cell)
0002372 (myotube)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0200006 (myoblast differentiation to myotubes, control sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)