FFCP PHASE1:Mm9::chr4:48598007..48598059,+: Difference between revisions
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{{FFCP|EntrezGene=230157|HGNC=|MCL_coexpression_id=22|UniProt=Q6PFE7|association_with_transcript=0bp_to_ENSMUST00000030032_5end|description=CAGE_peak_1_at_Tmeff1_5end|id=chr4:48598007..48598059,+|ontology_enrichment_celltype=CL:0000540!8.33e-16!33;CL:0000047!8.33e-16!33;CL:0000031!8.33e-16!33;CL:0000404!8.33e-16!33;CL:0000117!6.60e-14!23;CL:0000337!6.60e-14!23;CL:0000393!1.15e-12!39;CL:0000211!1.15e-12!39;CL:0002319!2.45e-10!43;CL:0000221!2.93e-10!44;CL:0000133!2.93e-10!44;CL:0000055!6.65e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.83e-16,33;CL:0000047,4.83e-16,33;CL:0000031,4.83e-16,33;CL:0000404,4.83e-16,33;CL:0000117,4.12e-14,23;CL:0000337,4.12e-14,23;CL:0000393,7.52e-13,39;CL:0000211,7.52e-13,39;CL:0002319,2.32e-10,43;CL:0000221,2.77e-10,44;CL:0000133,2.77e-10,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.35e-20!73;UBERON:0005743!3.35e-20!73;UBERON:0004121!6.57e-20!102;UBERON:0000924!6.57e-20!102;UBERON:0006601!6.57e-20!102;UBERON:0002346!1.24e-19!71;UBERON:0003075!1.24e-19!71;UBERON:0007284!1.24e-19!71;UBERON:0000073!1.81e-19!75;UBERON:0001016!1.81e-19!75;UBERON:0000033!4.42e-17!63;UBERON:0003056!1.25e-16!49;UBERON:0001049!3.25e-16!52;UBERON:0005068!3.25e-16!52;UBERON:0006241!3.25e-16!52;UBERON:0007135!3.25e-16!52;UBERON:0002020!2.23e-14!34;UBERON:0000955!2.63e-14!50;UBERON:0006238!2.63e-14!50;UBERON:0002616!4.20e-14!49;UBERON:0003080!5.64e-13!40;UBERON:0002780!1.05e-12!39;UBERON:0001890!1.05e-12!39;UBERON:0006240!1.05e-12!39;UBERON:0002791!1.04e-11!29;UBERON:0003528!1.04e-11!29;UBERON:0001893!1.04e-11!29;UBERON:0000468!2.71e-10!333;UBERON:0000922!1.53e-08!328;UBERON:0000956!1.23e-07!21;UBERON:0001869!1.23e-07!21;UBERON:0000203!1.23e-07!21;UBERON:0000153!4.72e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.50e-21,64;UBERON:0003075,5.50e-21,64;UBERON:0007284,5.50e-21,64;UBERON:0004121,9.04e-21,95;UBERON:0000924,9.04e-21,95;UBERON:0006601,9.04e-21,95;UBERON:0001017,1.79e-20,73;UBERON:0001016,9.93e-20,75;UBERON:0010371,1.07e-18,73;UBERON:0010314,3.08e-17,92;UBERON:0000073,6.87e-17,54;UBERON:0003056,9.92e-17,49;UBERON:0001049,2.58e-16,52;UBERON:0005068,2.58e-16,52;UBERON:0006241,2.58e-16,52;UBERON:0007135,2.58e-16,52;UBERON:0002020,2.61e-14,34;UBERON:0000955,3.01e-13,47;UBERON:0006238,3.01e-13,47;UBERON:0002616,4.81e-13,46;UBERON:0003080,5.06e-13,40;UBERON:0002780,9.56e-13,39;UBERON:0001890,9.56e-13,39;UBERON:0006240,9.56e-13,39;UBERON:0003528,1.31e-11,29;UBERON:0002791,1.31e-11,29;UBERON:0001893,1.31e-11,29;UBERON:0000956,1.71e-07,21;UBERON:0001869,1.71e-07,21;UBERON:0000203,1.71e-07,21;UBERON:0000922,2.88e-07,320|phase1_expression=11.2104192973356,0,0,0,0,0.671517087647559,1.16806320297763,0,0,0,0,0,0,0,0,0.404950534779652,0,0.157731082679119,0.137114433605739,0.42438965179803,7.05859308253879,0,0,0.319984845586813,0.45881856213434,0,0,0.430942465371778,0,0.252030129759931,0,0,0,0,1.1554064790051,2.1610503896604,1.83752420636132,0,0,0,0,0,0,2.14024590558481,1.72340783073175,6.24058957349717,7.04152209913235,1.96222640742402,1.09843091367236,0.972149495371417,3.07970127575798,0,0.503347818173209,0,0,4.88792928468299,1.71920063963254,2.06268836910977,59.2787230318621,52.8990979272033,42.466704034914,6.09920157724438,0.889294796111139,2.6996991518442,0,1.4209602298922,4.19440154725767,1.53687322128622,60.2436647512255,54.9474169009981,53.8431901059538,22.8520787523043,22.7494597180162,34.4199145794021,40.3509432986775,34.0110951045708,18.7196997698961,15.5778552463929,16.2822925251618,48.0066087337906,47.573574673253,41.6730696445408,23.7305549151174,15.757353080887,16.5022107598955,21.8025153250514,21.7828671622628,53.8694398435119,3.40767869999328,2.72057616384428,0.289864488701678,0,0,0,0.649776417447669,0,2.66844398250329,4.26075806445144,3.63700406444016,2.82671659608272,7.74638808771743,7.69958864485907,7.64415719119937,0,10.1750789275271,11.1478340809043,12.1325866803548,1.25602267690966,0,1.1875371125186,12.8379141806941,10.9607572192371,8.76338889573022,7.83757730873637,6.11461277105665,0.753999547978053,5.6854842578906,7.95296463059514,0,3.23533699894818,0.662524555381181,0.969750506270444,1.86391761218122,5.27005434620785,9.84399522023239,0.766371165625774,0,0,0,13.6309481858389,21.0450277296568,54.7852975212089,17.2086076990354,17.1329356411321,19.3242881440391,24.1739481970959,8.96186401882783,1.24406970610093,0,10.5220927943237,22.5108366325477,40.4627703802912,30.6105620669094,23.6606564002073,25.2415411851426,18.7046031615881,19.3962569838639,8.79591460512653,25.6525911590082,22.5036235399705,15.3077478022636,12.7133524807993,5.83899223373756,5.2237824978325,4.32142486456681,18.7092210809384,0,0,0,14.9130556225561,13.1334593589414,13.3245925481151,10.180023630164,7.67380503814875,8.94749254746794,7.44108623201305,4.56064782379353,6.889155199663,7.07607354627966,5.74586124276833,4.05344047729279,2.77779976108131,1.53685080703735,2.41571553768669,19.9775451135921,53.3045892124693,0,0.528901133327089,21.9686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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:230157 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6PFE7 | |||
|association_with_transcript=0bp_to_ENSMUST00000030032_5end | |||
|cluster_id=chr4:48598007..48598059,+ | |||
|description=CAGE_peak_1_at_Tmeff1_5end | |||
|id=chr4:48598007..48598059,+ | |||
|ontology_enrichment_celltype=CL:0000540!8.33e-16!33;CL:0000047!8.33e-16!33;CL:0000031!8.33e-16!33;CL:0000404!8.33e-16!33;CL:0000117!6.60e-14!23;CL:0000337!6.60e-14!23;CL:0000393!1.15e-12!39;CL:0000211!1.15e-12!39;CL:0002319!2.45e-10!43;CL:0000221!2.93e-10!44;CL:0000133!2.93e-10!44;CL:0000055!6.65e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.83e-16,33;CL:0000047,4.83e-16,33;CL:0000031,4.83e-16,33;CL:0000404,4.83e-16,33;CL:0000117,4.12e-14,23;CL:0000337,4.12e-14,23;CL:0000393,7.52e-13,39;CL:0000211,7.52e-13,39;CL:0002319,2.32e-10,43;CL:0000221,2.77e-10,44;CL:0000133,2.77e-10,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.35e-20!73;UBERON:0005743!3.35e-20!73;UBERON:0004121!6.57e-20!102;UBERON:0000924!6.57e-20!102;UBERON:0006601!6.57e-20!102;UBERON:0002346!1.24e-19!71;UBERON:0003075!1.24e-19!71;UBERON:0007284!1.24e-19!71;UBERON:0000073!1.81e-19!75;UBERON:0001016!1.81e-19!75;UBERON:0000033!4.42e-17!63;UBERON:0003056!1.25e-16!49;UBERON:0001049!3.25e-16!52;UBERON:0005068!3.25e-16!52;UBERON:0006241!3.25e-16!52;UBERON:0007135!3.25e-16!52;UBERON:0002020!2.23e-14!34;UBERON:0000955!2.63e-14!50;UBERON:0006238!2.63e-14!50;UBERON:0002616!4.20e-14!49;UBERON:0003080!5.64e-13!40;UBERON:0002780!1.05e-12!39;UBERON:0001890!1.05e-12!39;UBERON:0006240!1.05e-12!39;UBERON:0002791!1.04e-11!29;UBERON:0003528!1.04e-11!29;UBERON:0001893!1.04e-11!29;UBERON:0000468!2.71e-10!333;UBERON:0000922!1.53e-08!328;UBERON:0000956!1.23e-07!21;UBERON:0001869!1.23e-07!21;UBERON:0000203!1.23e-07!21;UBERON:0000153!4.72e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.50e-21,64;UBERON:0003075,5.50e-21,64;UBERON:0007284,5.50e-21,64;UBERON:0004121,9.04e-21,95;UBERON:0000924,9.04e-21,95;UBERON:0006601,9.04e-21,95;UBERON:0001017,1.79e-20,73;UBERON:0001016,9.93e-20,75;UBERON:0010371,1.07e-18,73;UBERON:0010314,3.08e-17,92;UBERON:0000073,6.87e-17,54;UBERON:0003056,9.92e-17,49;UBERON:0001049,2.58e-16,52;UBERON:0005068,2.58e-16,52;UBERON:0006241,2.58e-16,52;UBERON:0007135,2.58e-16,52;UBERON:0002020,2.61e-14,34;UBERON:0000955,3.01e-13,47;UBERON:0006238,3.01e-13,47;UBERON:0002616,4.81e-13,46;UBERON:0003080,5.06e-13,40;UBERON:0002780,9.56e-13,39;UBERON:0001890,9.56e-13,39;UBERON:0006240,9.56e-13,39;UBERON:0003528,1.31e-11,29;UBERON:0002791,1.31e-11,29;UBERON:0001893,1.31e-11,29;UBERON:0000956,1.71e-07,21;UBERON:0001869,1.71e-07,21;UBERON:0000203,1.71e-07,21;UBERON:0000922,2.88e-07,320 | |||
|phase1_expression=11.2104192973356,0,0,0,0,0.671517087647559,1.16806320297763,0,0,0,0,0,0,0,0,0.404950534779652,0,0.157731082679119,0.137114433605739,0.42438965179803,7.05859308253879,0,0,0.319984845586813,0.45881856213434,0,0,0.430942465371778,0,0.252030129759931,0,0,0,0,1.1554064790051,2.1610503896604,1.83752420636132,0,0,0,0,0,0,2.14024590558481,1.72340783073175,6.24058957349717,7.04152209913235,1.96222640742402,1.09843091367236,0.972149495371417,3.07970127575798,0,0.503347818173209,0,0,4.88792928468299,1.71920063963254,2.06268836910977,59.2787230318621,52.8990979272033,42.466704034914,6.09920157724438,0.889294796111139,2.6996991518442,0,1.4209602298922,4.19440154725767,1.53687322128622,60.2436647512255,54.9474169009981,53.8431901059538,22.8520787523043,22.7494597180162,34.4199145794021,40.3509432986775,34.0110951045708,18.7196997698961,15.5778552463929,16.2822925251618,48.0066087337906,47.573574673253,41.6730696445408,23.7305549151174,15.757353080887,16.5022107598955,21.8025153250514,21.7828671622628,53.8694398435119,3.40767869999328,2.72057616384428,0.289864488701678,0,0,0,0.649776417447669,0,2.66844398250329,4.26075806445144,3.63700406444016,2.82671659608272,7.74638808771743,7.69958864485907,7.64415719119937,0,10.1750789275271,11.1478340809043,12.1325866803548,1.25602267690966,0,1.1875371125186,12.8379141806941,10.9607572192371,8.76338889573022,7.83757730873637,6.11461277105665,0.753999547978053,5.6854842578906,7.95296463059514,0,3.23533699894818,0.662524555381181,0.969750506270444,1.86391761218122,5.27005434620785,9.84399522023239,0.766371165625774,0,0,0,13.6309481858389,21.0450277296568,54.7852975212089,17.2086076990354,17.1329356411321,19.3242881440391,24.1739481970959,8.96186401882783,1.24406970610093,0,10.5220927943237,22.5108366325477,40.4627703802912,30.6105620669094,23.6606564002073,25.2415411851426,18.7046031615881,19.3962569838639,8.79591460512653,25.6525911590082,22.5036235399705,15.3077478022636,12.7133524807993,5.83899223373756,5.2237824978325,4.32142486456681,18.7092210809384,0,0,0,14.9130556225561,13.1334593589414,13.3245925481151,10.180023630164,7.67380503814875,8.94749254746794,7.44108623201305,4.56064782379353,6.889155199663,7.07607354627966,5.74586124276833,4.05344047729279,2.77779976108131,1.53685080703735,2.41571553768669,19.9775451135921,53.3045892124693,0,0.528901133327089,21.9686898051291,17.4177503895329,10.9537342123779,4.43703754171354,4.00280478920767,3.99473814836374,1.42358718463353,1.15289268306808,2.76468729680296,2.38747766449381,1.55971269695296,0.898819408654221,0.648414149624083,1.59313018603494,15.3630999771996,14.3953125888258,9.01661885384643,12.0154283428735,10.0855293327165,9.53847150508332,3.09859031908861,0.147610147979602,0.31399745568275,0.493588655687202,0,2.33583148002532,1.17935397067922,1.12431056192427,0.608580364165509,0.241177159752417,0.50925170356284,0.287696137450811,0.162135226775035,0.274561413188081,0,0.372140947668503,0.624075346229121,0,0,0,8.68339993783042,22.3599865889172,14.1779529504563,12.0519010900384,11.9692026627136,9.04533790185805,11.1880511216426,11.7080188714679,12.9260818167077,12.1805579306826,17.6994793209811,14.9115616391322,10.0157289482219,7.81104916340163,0,0,3.93411418415229,2.75936746304733,17.3394637186815,32.5848488726325,12.622990794004,1.76729649043061,11.6738041184015,13.2749173060857,13.5716740571663,12.1874086955802,9.58034298554295,15.5692091933858,19.02610297872,15.7818163272108,17.7879500075936,12.5315313404505,2.2710413633323,12.8207234640424,12.7051828295789,7.4236555337641,3.98235415019888,9.46844481004428,8.16273603804828,4.33791683438566,2.65771703592696,3.99665692327106,7.23599220871019,7.27067458955011,2.49548164869305,3.47640433729398,5.27093042874994,4.12542172992747,0,21.9674534718198,14.3588138998857,13.5032332069903,9.3990323830405,13.3776613201553,13.657568709976,4.26250928760439,7.74416636610244,38.1297727554876,0.441056796109924,2.96795255294664,3.87514624070173,4.40284351975538,3.46179797609096,5.58079059133208,1.1659233465194,33.1911290598812,0.170870880797853,7.42992724667601,2.22233432843654,0,0,0,0,0,0,1.90934123603023,21.8271835570983,9.75933442208874,9.39646465149671,7.94535524854981,5.24070152990826,4.04593039154462,3.88471241909079,1.83229159388821,0.90730481304255,1.86401793926078,4.50954350947352,21.231349538245,17.3731414979952,16.9172533859321,14.5950600529836,11.6579726588637,12.9092962510329,26.8221032778537,23.8030711846364,7.73069186643219,8.92893019399383,0,6.68993210457542,4.00572732942826,1.16928740680016,1.07416017400489,0.993406773906324,0.721172697119813,0.443068581523732,0.302899349844443,0.381034033274999,0.504130925684203,0,0.0962118416403295,0.233753804363138,1.58711268530648,36.4056963533466,26.3758738431859,21.321346278238,1.54551675225752,0.93841237725591,6.04400360081975,2.14368379079066,1.00314420807073,19.7663144915973,17.0320337507655,22.3429250241365,17.3571714167124,13.0165678756422,15.107877947794,12.8254275044043,10.8077088773813,11.3285602246051,16.568329976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| |||
|short_description=p1@Tmeff1 | |||
}} |
Revision as of 13:49, 5 August 2015
Short description: | p1@Tmeff1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tmeff1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000030032_5end |
EntrezGene: | 230157 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.83e-16 | 33 |
neuronal stem cell | 4.83e-16 | 33 |
neuroblast | 4.83e-16 | 33 |
electrically signaling cell | 4.83e-16 | 33 |
CNS neuron (sensu Vertebrata) | 4.12e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.12e-14 | 23 |
electrically responsive cell | 7.52e-13 | 39 |
electrically active cell | 7.52e-13 | 39 |
neural cell | 2.32e-10 | 43 |
ectodermal cell | 2.77e-10 | 44 |
neurectodermal cell | 2.77e-10 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 5.50e-21 | 64 |
neural plate | 5.50e-21 | 64 |
presumptive neural plate | 5.50e-21 | 64 |
ectoderm-derived structure | 9.04e-21 | 95 |
ectoderm | 9.04e-21 | 95 |
presumptive ectoderm | 9.04e-21 | 95 |
central nervous system | 1.79e-20 | 73 |
nervous system | 9.93e-20 | 75 |
ecto-epithelium | 1.07e-18 | 73 |
structure with developmental contribution from neural crest | 3.08e-17 | 92 |
regional part of nervous system | 6.87e-17 | 54 |
pre-chordal neural plate | 9.92e-17 | 49 |
neural tube | 2.58e-16 | 52 |
neural rod | 2.58e-16 | 52 |
future spinal cord | 2.58e-16 | 52 |
neural keel | 2.58e-16 | 52 |
gray matter | 2.61e-14 | 34 |
brain | 3.01e-13 | 47 |
future brain | 3.01e-13 | 47 |
regional part of brain | 4.81e-13 | 46 |
anterior neural tube | 5.06e-13 | 40 |
regional part of forebrain | 9.56e-13 | 39 |
forebrain | 9.56e-13 | 39 |
future forebrain | 9.56e-13 | 39 |
brain grey matter | 1.31e-11 | 29 |
regional part of telencephalon | 1.31e-11 | 29 |
telencephalon | 1.31e-11 | 29 |
cerebral cortex | 1.71e-07 | 21 |
cerebral hemisphere | 1.71e-07 | 21 |
pallium | 1.71e-07 | 21 |
embryo | 2.88e-07 | 320 |