FFCP PHASE1:Mm9::chr13:25029454..25029560,-: Difference between revisions
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{{FFCP|EntrezGene=214579|HGNC=|MCL_coexpression_id=1|UniProt=Q8BWF0,B2RS41|association_with_transcript=0bp_to_ENSMUST00000037615,NM_172532,uc007pwp.2_5end|description=CAGE_peak_1_at_Aldh5a1_5end|id=chr13:25029454..25029560,-|ontology_enrichment_celltype=CL:0000117!3.83e-10!23;CL:0000337!3.83e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.75e-10,23;CL:0000337,3.75e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000025!3.23e-21!114;UBERON:0004111!1.45e-19!122;UBERON:0001049!3.40e-19!52;UBERON:0005068!3.40e-19!52;UBERON:0006241!3.40e-19!52;UBERON:0007135!3.40e-19!52;UBERON:0001017!3.29e-18!73;UBERON:0005743!3.29e-18!73;UBERON:0000033!5.60e-18!63;UBERON:0000955!6.06e-18!50;UBERON:0006238!6.06e-18!50;UBERON:0002346!2.01e-17!71;UBERON:0003075!2.01e-17!71;UBERON:0007284!2.01e-17!71;UBERON:0002616!2.39e-17!49;UBERON:0000073!1.28e-16!75;UBERON:0001016!1.28e-16!75;UBERON:0004121!1.48e-14!102;UBERON:0000924!1.48e-14!102;UBERON:0006601!1.48e-14!102;UBERON:0003056!1.12e-13!49;UBERON:0002020!3.25e-13!34;UBERON:0003080!6.00e-13!40;UBERON:0002780!2.36e-12!39;UBERON:0001890!2.36e-12!39;UBERON:0006240!2.36e-12!39;UBERON:0002791!3.77e-10!29;UBERON:0003528!3.77e-10!29;UBERON:0001893!3.77e-10!29;UBERON:0000483!2.04e-08!181;UBERON:0000119!4.26e-08!183;UBERON:0000468!8.29e-08!333;UBERON:0003076!3.01e-07!12;UBERON:0003057!3.01e-07!12;UBERON:0000062!3.19e-07!269;UBERON:0003103!4.09e-07!43;UBERON:0000481!6.42e-07!230;UBERON:0000480!6.46e-07!308;UBERON:0000467!6.46e-07!308;UBERON:0000922!7.65e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0000025,3.08e-21,114;UBERON:0010314,3.81e-21,92;UBERON:0000073,1.06e-20,54;UBERON:0004111,1.39e-19,122;UBERON:0001049,3.26e-19,52;UBERON:0005068,3.26e-19,52;UBERON:0006241,3.26e-19,52;UBERON:0007135,3.26e-19,52;UBERON:0001017,3.17e-18,73;UBERON:0002346,4.38e-18,64;UBERON:0003075,4.38e-18,64;UBERON:0007284,4.38e-18,64;UBERON:0001016,1.34e-16,75;UBERON:0000955,5.69e-16,47;UBERON:0006238,5.69e-16,47;UBERON:0002616,2.16e-15,46;UBERON:0010371,1.01e-14,73;UBERON:0004121,1.26e-14,95;UBERON:0000924,1.26e-14,95;UBERON:0006601,1.26e-14,95;UBERON:0003056,1.09e-13,49;UBERON:0002020,3.16e-13,34;UBERON:0003080,5.84e-13,40;UBERON:0002780,2.30e-12,39;UBERON:0001890,2.30e-12,39;UBERON:0006240,2.30e-12,39;UBERON:0003528,3.69e-10,29;UBERON:0002791,3.69e-10,29;UBERON:0001893,3.69e-10,29;UBERON:0000483,3.99e-08,174;UBERON:0000119,8.32e-08,176;UBERON:0003076,2.97e-07,12;UBERON:0003057,2.97e-07,12;UBERON:0003103,4.04e-07,43|phase1_expression=7.8472935081349,4.88565570695105,5.91499011206397,4.23449895829562,4.00716583957078,12.4230661214798,14.4839837169226,0.774739940649458,0.422366166455,0.234064526321993,0,0,1.19840510951844,0.874204024189974,0,0,0,0.157731082679119,0.274228867211478,0,15.4778788074947,0.0992909512008853,0,6.87967418011649,11.2410547722913,8.03924749761028,10.7690499039769,8.83432054012145,8.17100703662408,13.1055667475164,13.082100128663,0,0,0,21.086168241843,25.7663700305663,25.1128308202714,0,0,0,0,0,0,4.78407908307194,4.46058497365864,4.9557623083654,10.9534788208725,17.0059621976748,8.78744730937887,9.72149495371417,13.7186693192855,24.4379359420452,0,2.17608642603403,0,1.80081605225163,4.29800159908135,2.57836046138721,32.168317276676,24.8625760257855,29.1562445612842,4.74382344896785,7.11435836888911,1.3498495759221,0,1.4209602298922,13.1824048628098,22.6688800139717,10.9910989046986,11.340498819862,9.04397333810943,55.1306399899341,49.4745531731614,13.7189695120749,13.3225204715349,11.9498442259303,55.0579404996944,54.1394313481196,44.8531077108231,26.3772575460388,29.0015830219639,21.8783615633839,51.9280378142569,56.8390236131997,53.6321849696604,55.0955454835759,43.5657343245255,34.6702969235059,0.302904773332736,2.19157524309678,4.63783181922684,24.9522924324602,31.2786813505565,50.192396822317,38.9865850468601,31.8099089839108,15.4488862144927,2.72688516124892,4.1565760736459,4.94675404314476,11.4083170019111,1.28326477414318,5.09610479413291,0,5.84525810730278,7.09407623330276,8.59391556525132,22.1516726654976,0.517875767294343,9.79718117827843,12.4909435271618,8.22056791442781,10.6083128737787,9.64624899536784,12.346814249249,10.1789938977037,2.22475470960936,14.6045350489111,1.76922110389975,3.558870698843,2.20841518460394,1.93950101254089,7.45567044872489,31.3275452802355,30.5792191947644,13.0283098156382,0.718890747035522,3.59941638596045,1.27070227073065,45.5363543790661,46.6650614874999,25.2565247746857,32.5051478759557,35.5444485689159,43.4277013129481,49.3213439725983,13.2391173005411,4.72746488318353,10.3616330957807,10.5220927943237,14.1831282829347,11.9549094305406,11.7040384373477,11.3028613376786,14.9680298132921,13.0675994690547,13.9615569593996,12.6764651662118,9.05385570317937,6.61871280587367,5.10258260075452,7.67185063496512,7.50727572909114,5.92028683087683,5.55611768301447,11.5439874754726,0.702213187313235,1.28673953557358,1.70498099637356,12.8417978972011,17.8239805585633,18.3663302690235,18.702834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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:214579 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8BWF0,uniprot:B2RS41 | |||
|association_with_transcript=0bp_to_ENSMUST00000037615,NM_172532,uc007pwp.2_5end | |||
|cluster_id=chr13:25029454..25029560,- | |||
|description=CAGE_peak_1_at_Aldh5a1_5end | |||
|id=chr13:25029454..25029560,- | |||
|ontology_enrichment_celltype=CL:0000117!3.83e-10!23;CL:0000337!3.83e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.75e-10,23;CL:0000337,3.75e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!3.23e-21!114;UBERON:0004111!1.45e-19!122;UBERON:0001049!3.40e-19!52;UBERON:0005068!3.40e-19!52;UBERON:0006241!3.40e-19!52;UBERON:0007135!3.40e-19!52;UBERON:0001017!3.29e-18!73;UBERON:0005743!3.29e-18!73;UBERON:0000033!5.60e-18!63;UBERON:0000955!6.06e-18!50;UBERON:0006238!6.06e-18!50;UBERON:0002346!2.01e-17!71;UBERON:0003075!2.01e-17!71;UBERON:0007284!2.01e-17!71;UBERON:0002616!2.39e-17!49;UBERON:0000073!1.28e-16!75;UBERON:0001016!1.28e-16!75;UBERON:0004121!1.48e-14!102;UBERON:0000924!1.48e-14!102;UBERON:0006601!1.48e-14!102;UBERON:0003056!1.12e-13!49;UBERON:0002020!3.25e-13!34;UBERON:0003080!6.00e-13!40;UBERON:0002780!2.36e-12!39;UBERON:0001890!2.36e-12!39;UBERON:0006240!2.36e-12!39;UBERON:0002791!3.77e-10!29;UBERON:0003528!3.77e-10!29;UBERON:0001893!3.77e-10!29;UBERON:0000483!2.04e-08!181;UBERON:0000119!4.26e-08!183;UBERON:0000468!8.29e-08!333;UBERON:0003076!3.01e-07!12;UBERON:0003057!3.01e-07!12;UBERON:0000062!3.19e-07!269;UBERON:0003103!4.09e-07!43;UBERON:0000481!6.42e-07!230;UBERON:0000480!6.46e-07!308;UBERON:0000467!6.46e-07!308;UBERON:0000922!7.65e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000025,3.08e-21,114;UBERON:0010314,3.81e-21,92;UBERON:0000073,1.06e-20,54;UBERON:0004111,1.39e-19,122;UBERON:0001049,3.26e-19,52;UBERON:0005068,3.26e-19,52;UBERON:0006241,3.26e-19,52;UBERON:0007135,3.26e-19,52;UBERON:0001017,3.17e-18,73;UBERON:0002346,4.38e-18,64;UBERON:0003075,4.38e-18,64;UBERON:0007284,4.38e-18,64;UBERON:0001016,1.34e-16,75;UBERON:0000955,5.69e-16,47;UBERON:0006238,5.69e-16,47;UBERON:0002616,2.16e-15,46;UBERON:0010371,1.01e-14,73;UBERON:0004121,1.26e-14,95;UBERON:0000924,1.26e-14,95;UBERON:0006601,1.26e-14,95;UBERON:0003056,1.09e-13,49;UBERON:0002020,3.16e-13,34;UBERON:0003080,5.84e-13,40;UBERON:0002780,2.30e-12,39;UBERON:0001890,2.30e-12,39;UBERON:0006240,2.30e-12,39;UBERON:0003528,3.69e-10,29;UBERON:0002791,3.69e-10,29;UBERON:0001893,3.69e-10,29;UBERON:0000483,3.99e-08,174;UBERON:0000119,8.32e-08,176;UBERON:0003076,2.97e-07,12;UBERON:0003057,2.97e-07,12;UBERON:0003103,4.04e-07,43 | |||
|phase1_expression=7.8472935081349,4.88565570695105,5.91499011206397,4.23449895829562,4.00716583957078,12.4230661214798,14.4839837169226,0.774739940649458,0.422366166455,0.234064526321993,0,0,1.19840510951844,0.874204024189974,0,0,0,0.157731082679119,0.274228867211478,0,15.4778788074947,0.0992909512008853,0,6.87967418011649,11.2410547722913,8.03924749761028,10.7690499039769,8.83432054012145,8.17100703662408,13.1055667475164,13.082100128663,0,0,0,21.086168241843,25.7663700305663,25.1128308202714,0,0,0,0,0,0,4.78407908307194,4.46058497365864,4.9557623083654,10.9534788208725,17.0059621976748,8.78744730937887,9.72149495371417,13.7186693192855,24.4379359420452,0,2.17608642603403,0,1.80081605225163,4.29800159908135,2.57836046138721,32.168317276676,24.8625760257855,29.1562445612842,4.74382344896785,7.11435836888911,1.3498495759221,0,1.4209602298922,13.1824048628098,22.6688800139717,10.9910989046986,11.340498819862,9.04397333810943,55.1306399899341,49.4745531731614,13.7189695120749,13.3225204715349,11.9498442259303,55.0579404996944,54.1394313481196,44.8531077108231,26.3772575460388,29.0015830219639,21.8783615633839,51.9280378142569,56.8390236131997,53.6321849696604,55.0955454835759,43.5657343245255,34.6702969235059,0.302904773332736,2.19157524309678,4.63783181922684,24.9522924324602,31.2786813505565,50.192396822317,38.9865850468601,31.8099089839108,15.4488862144927,2.72688516124892,4.1565760736459,4.94675404314476,11.4083170019111,1.28326477414318,5.09610479413291,0,5.84525810730278,7.09407623330276,8.59391556525132,22.1516726654976,0.517875767294343,9.79718117827843,12.4909435271618,8.22056791442781,10.6083128737787,9.64624899536784,12.346814249249,10.1789938977037,2.22475470960936,14.6045350489111,1.76922110389975,3.558870698843,2.20841518460394,1.93950101254089,7.45567044872489,31.3275452802355,30.5792191947644,13.0283098156382,0.718890747035522,3.59941638596045,1.27070227073065,45.5363543790661,46.6650614874999,25.2565247746857,32.5051478759557,35.5444485689159,43.4277013129481,49.3213439725983,13.2391173005411,4.72746488318353,10.3616330957807,10.5220927943237,14.1831282829347,11.9549094305406,11.7040384373477,11.3028613376786,14.9680298132921,13.0675994690547,13.9615569593996,12.6764651662118,9.05385570317937,6.61871280587367,5.10258260075452,7.67185063496512,7.50727572909114,5.92028683087683,5.55611768301447,11.5439874754726,0.702213187313235,1.28673953557358,1.70498099637356,12.8417978972011,17.8239805585633,18.3663302690235,18.7028341112316,24.0052362731833,26.9967447552912,29.066743093801,28.4369805483596,24.5207218971056,27.4814949355512,13.9542344467231,19.3754454814595,23.8305979503292,21.515911298523,25.7676324019914,32.5949420274397,16.4647379806855,6.27795687669216,13.2225283331772,16.423195291213,14.6309103272076,11.8558064416326,10.0841762311671,11.5636582799333,9.13083005340284,11.3886974770683,10.0466362381647,7.79139147280835,11.5394753783867,9.16331209459865,8.08937467788799,10.59076444386,11.3510525754989,11.1904061562318,10.967857210534,15.7790829942313,15.2738495883986,11.6371492300575,18.936671370386,16.947391949301,14.9086249459398,18.839847340965,27.1473760627961,29.941715335802,4.67166296005063,9.04171377520734,6.2961391467759,8.52012509831712,9.88826354984909,9.93040821947537,13.5217184601881,7.7824908852017,20.0429831627299,27.3159592401974,24.9334434937897,26.2111645416231,30.8146231095476,34.6237008097291,40.0428122731595,5.35784251483154,15.1593129416388,10.4297584922897,16.4652733201932,14.0814148973101,9.88286918906713,7.14130922658041,5.46374214001837,6.9359463406724,5.09368786192182,5.10255259703959,4.91589944147214,5.00786447411097,6.65385669474953,0,0,5.90117127622843,7.72622889653251,36.6055345172166,54.6206459519667,2.45902418065013,7.57412781613119,3.15508219416257,5.0757036758563,6.89354872744957,2.38968797952552,2.45078541490634,3.39691836946599,6.07216052512342,5.84511715822624,6.32460444714438,36.3093087556642,9.79386587937053,6.58842733568844,12.2165219515182,5.77395430403874,13.2745138339963,17.9657670754686,30.2323556964751,17.1630622577867,10.335566250827,5.84126781093462,11.3708448994017,9.08834323693764,10.3384239731569,10.4292130118819,9.48767477174989,11.3449097573006,12.5962654128902,14.5849486165361,13.194585745841,15.4322665222746,14.0098784577396,12.4858172321449,11.0247843803421,17.6589670486468,2.11204537257339,1.90648863777438,3.74898276693435,4.28704257647848,9.52640117505843,6.1519183426719,4.65552141612232,5.9090723908222,9.03590593552537,33.7474049659128,0.683483523191411,6.60437977482312,2.77791791054568,0.565105371014073,0.27338845544205,0.686334519619568,2.20971958992012,2.23922323717853,2.3493995546752,4.77335309007557,13.91878371757,11.1825706919767,12.3126088536853,10.4544148007234,8.29777742235475,9.57536859332227,13.1418994603284,8.63794608547298,12.4430374360121,8.07741107013003,0.56369293868419,11.2137409532984,9.10021697514037,14.7782903141476,14.4659002295059,15.8818757961331,15.6085127398853,14.3224823328345,9.96163772044253,4.5900982956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| |||
|short_description=p1@Aldh5a1 | |||
}} |
Revision as of 20:24, 5 August 2015
Short description: | p1@Aldh5a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Aldh5a1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000037615, NM_172532, uc007pwp.2_5end |
EntrezGene: | 214579 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.75e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.75e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
tube | 3.08e-21 | 114 |
structure with developmental contribution from neural crest | 3.81e-21 | 92 |
regional part of nervous system | 1.06e-20 | 54 |
anatomical conduit | 1.39e-19 | 122 |
neural tube | 3.26e-19 | 52 |
neural rod | 3.26e-19 | 52 |
future spinal cord | 3.26e-19 | 52 |
neural keel | 3.26e-19 | 52 |
central nervous system | 3.17e-18 | 73 |
neurectoderm | 4.38e-18 | 64 |
neural plate | 4.38e-18 | 64 |
presumptive neural plate | 4.38e-18 | 64 |
nervous system | 1.34e-16 | 75 |
brain | 5.69e-16 | 47 |
future brain | 5.69e-16 | 47 |
regional part of brain | 2.16e-15 | 46 |
ecto-epithelium | 1.01e-14 | 73 |
ectoderm-derived structure | 1.26e-14 | 95 |
ectoderm | 1.26e-14 | 95 |
presumptive ectoderm | 1.26e-14 | 95 |
pre-chordal neural plate | 1.09e-13 | 49 |
gray matter | 3.16e-13 | 34 |
anterior neural tube | 5.84e-13 | 40 |
regional part of forebrain | 2.30e-12 | 39 |
forebrain | 2.30e-12 | 39 |
future forebrain | 2.30e-12 | 39 |
brain grey matter | 3.69e-10 | 29 |
regional part of telencephalon | 3.69e-10 | 29 |
telencephalon | 3.69e-10 | 29 |
epithelium | 3.99e-08 | 174 |
cell layer | 8.32e-08 | 176 |
posterior neural tube | 2.97e-07 | 12 |
chordal neural plate | 2.97e-07 | 12 |
compound organ | 4.04e-07 | 43 |