FFCP PHASE1:Mm9::chr3:152003314..152003380,-: Difference between revisions
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{{FFCP|EntrezGene=215708|HGNC=|MCL_coexpression_id=1|UniProt=Q4QQM5,B2RRB9|association_with_transcript=0bp_to_ENSMUST00000068243,ENSMUST00000073089,NM_001162375,NM_174868,uc008rte.2,uc008rtf.2,uc008rtg.2,uc012czl.1_5end|description=CAGE_peak_1_at_Fam73a_5end|id=chr3:152003314..152003380,-|ontology_enrichment_celltype=CL:0000540!5.22e-08!33;CL:0000047!5.22e-08!33;CL:0000031!5.22e-08!33;CL:0000404!5.22e-08!33|ontology_enrichment_celltype_v019_2=CL:0000540,5.22e-08,33;CL:0000047,5.22e-08,33;CL:0000031,5.22e-08,33;CL:0000404,5.22e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.80e-17!63;UBERON:0001017!1.12e-16!73;UBERON:0005743!1.12e-16!73;UBERON:0002346!1.12e-16!71;UBERON:0003075!1.12e-16!71;UBERON:0007284!1.12e-16!71;UBERON:0000073!1.57e-15!75;UBERON:0001016!1.57e-15!75;UBERON:0001049!1.57e-14!52;UBERON:0005068!1.57e-14!52;UBERON:0006241!1.57e-14!52;UBERON:0007135!1.57e-14!52;UBERON:0000153!2.02e-14!94;UBERON:0000955!2.49e-14!50;UBERON:0006238!2.49e-14!50;UBERON:0003056!3.20e-14!49;UBERON:0004121!3.29e-14!102;UBERON:0000924!3.29e-14!102;UBERON:0006601!3.29e-14!102;UBERON:0002616!8.49e-14!49;UBERON:0007811!3.07e-13!86;UBERON:0003080!2.21e-11!40;UBERON:0002780!9.02e-11!39;UBERON:0001890!9.02e-11!39;UBERON:0006240!9.02e-11!39;UBERON:0002020!4.75e-10!34;UBERON:0002791!3.17e-08!29;UBERON:0003528!3.17e-08!29;UBERON:0001893!3.17e-08!29;UBERON:0002021!2.67e-07!10;UBERON:0000411!2.67e-07!10;UBERON:0001950!2.67e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.97e-19,64;UBERON:0003075,4.97e-19,64;UBERON:0007284,4.97e-19,64;UBERON:0001017,1.12e-16,73;UBERON:0000073,8.49e-16,54;UBERON:0010371,8.97e-16,73;UBERON:0004121,1.20e-15,95;UBERON:0000924,1.20e-15,95;UBERON:0006601,1.20e-15,95;UBERON:0001016,1.57e-15,75;UBERON:0001049,1.57e-14,52;UBERON:0005068,1.57e-14,52;UBERON:0006241,1.57e-14,52;UBERON:0007135,1.57e-14,52;UBERON:0003056,3.19e-14,49;UBERON:0010314,3.46e-14,92;UBERON:0000955,1.68e-12,47;UBERON:0006238,1.68e-12,47;UBERON:0002616,5.48e-12,46;UBERON:0003080,2.20e-11,40;UBERON:0002780,9.01e-11,39;UBERON:0001890,9.01e-11,39;UBERON:0006240,9.01e-11,39;UBERON:0002020,4.75e-10,34;UBERON:0003528,3.17e-08,29;UBERON:0002791,3.17e-08,29;UBERON:0001893,3.17e-08,29;UBERON:0002021,2.67e-07,10;UBERON:0000411,2.67e-07,10;UBERON:0001950,2.67e-07,10|phase1_expression=23.5418805244047,0.348975407639361,0.909998478779072,2.11724947914781,2.50447864973174,7.21880869221126,5.60670337429262,11.1046058159756,5.20918271961167,5.61754863172784,10.6155140299813,12.4444568032725,9.92964233600993,7.34331380319578,8.66085380720723,8.90891176515234,3.49780939064073,16.2463015159492,17.824876368746,16.9755860719212,29.0848052316659,17.1773345577532,21.1571829202538,5.11975752938901,4.81759490241057,3.44539178469012,3.01533397311352,3.01659725760245,3.42042155021473,4.28451220591882,3.99114919179548,14.6057054895715,14.1464901144451,15.8481681015439,18.1976520443303,18.1195763440757,24.7044921077467,2.51118978442145,1.5626706890476,0,1.17646297606203,1.36609096991689,0.971020706062307,3.77690453926732,4.35920804243913,4.40512205188036,2.34717403304412,6.1047043786525,4.17403747195497,5.24960727500565,5.17949760013841,8.62515386189829,15.7715649694272,9.42970784614748,17.4768775554081,2.82985379639542,2.86533439938757,4.12537673821954,16.7922662513466,10.0508286061686,20.2826049121977,3.38844532069132,0,1.3498495759221,0.988866362566974,2.1314403448383,4.19440154725767,6.14749288514487,23.8486108309499,22.1409738863973,18.9292465216244,32.2785612376298,26.9459619960969,17.1487118900936,12.555756703389,16.5459381589804,85.8903871795232,67.1635398328087,83.5619540913964,17.9365351313064,12.9912453915422,15.106487746146,64.491272769319,81.6005784545936,78.843895852834,28.5789727909458,23.9184423742493,18.8263440283554,6.13382165998791,9.97544593409569,16.8121403446973,6.0229671388697,0.679971333707751,4.31762553310254,1.94932925234301,0.896053774194671,9.12888730856387,0,0,0,26.4785629180159,0,0,0,15.5873549528074,10.1343946190039,10.6160133453104,10.1623652949963,21.7507822263624,15.8833088799362,17.5220180033797,11.2652226975492,9.91646638201052,12.6607018064203,16.9327738275415,9.42499434972566,24.9666917411718,6.07317299063629,5.30766331169925,9.38247729694973,9.49618529379692,8.24287930329878,20.5030937339934,53.5788858531131,60.1112048554616,8.9409969323007,9.58520996047362,6.59893004092748,8.25956475974921,83.5831767878911,70.9125934368871,22.3664746760899,70.7464983182565,78.2489299430811,72.725815595846,71.7106382759489,18.6366035846079,18.9098595327341,45.7428192764951,11.995185785529,22.9011979614359,22.5304062344803,23.9482632641114,23.6606564002073,29.9360596265843,25.7508577772548,27.5483070205603,30.5269977472039,16.383167462896,20.6125627382923,25.1610107554447,17.535658594206,24.190110682627,17.0643561595862,14.1989674121481,20.5005294823048,5.61770549850588,5.91900186363845,11.0823764764281,23.1980865239762,16.6513502586578,18.3663302690235,19.4130683179872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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:215708 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q4QQM5,uniprot:B2RRB9 | |||
|association_with_transcript=0bp_to_ENSMUST00000068243,ENSMUST00000073089,NM_001162375,NM_174868,uc008rte.2,uc008rtf.2,uc008rtg.2,uc012czl.1_5end | |||
|cluster_id=chr3:152003314..152003380,- | |||
|description=CAGE_peak_1_at_Fam73a_5end | |||
|id=chr3:152003314..152003380,- | |||
|ontology_enrichment_celltype=CL:0000540!5.22e-08!33;CL:0000047!5.22e-08!33;CL:0000031!5.22e-08!33;CL:0000404!5.22e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.22e-08,33;CL:0000047,5.22e-08,33;CL:0000031,5.22e-08,33;CL:0000404,5.22e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.80e-17!63;UBERON:0001017!1.12e-16!73;UBERON:0005743!1.12e-16!73;UBERON:0002346!1.12e-16!71;UBERON:0003075!1.12e-16!71;UBERON:0007284!1.12e-16!71;UBERON:0000073!1.57e-15!75;UBERON:0001016!1.57e-15!75;UBERON:0001049!1.57e-14!52;UBERON:0005068!1.57e-14!52;UBERON:0006241!1.57e-14!52;UBERON:0007135!1.57e-14!52;UBERON:0000153!2.02e-14!94;UBERON:0000955!2.49e-14!50;UBERON:0006238!2.49e-14!50;UBERON:0003056!3.20e-14!49;UBERON:0004121!3.29e-14!102;UBERON:0000924!3.29e-14!102;UBERON:0006601!3.29e-14!102;UBERON:0002616!8.49e-14!49;UBERON:0007811!3.07e-13!86;UBERON:0003080!2.21e-11!40;UBERON:0002780!9.02e-11!39;UBERON:0001890!9.02e-11!39;UBERON:0006240!9.02e-11!39;UBERON:0002020!4.75e-10!34;UBERON:0002791!3.17e-08!29;UBERON:0003528!3.17e-08!29;UBERON:0001893!3.17e-08!29;UBERON:0002021!2.67e-07!10;UBERON:0000411!2.67e-07!10;UBERON:0001950!2.67e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.97e-19,64;UBERON:0003075,4.97e-19,64;UBERON:0007284,4.97e-19,64;UBERON:0001017,1.12e-16,73;UBERON:0000073,8.49e-16,54;UBERON:0010371,8.97e-16,73;UBERON:0004121,1.20e-15,95;UBERON:0000924,1.20e-15,95;UBERON:0006601,1.20e-15,95;UBERON:0001016,1.57e-15,75;UBERON:0001049,1.57e-14,52;UBERON:0005068,1.57e-14,52;UBERON:0006241,1.57e-14,52;UBERON:0007135,1.57e-14,52;UBERON:0003056,3.19e-14,49;UBERON:0010314,3.46e-14,92;UBERON:0000955,1.68e-12,47;UBERON:0006238,1.68e-12,47;UBERON:0002616,5.48e-12,46;UBERON:0003080,2.20e-11,40;UBERON:0002780,9.01e-11,39;UBERON:0001890,9.01e-11,39;UBERON:0006240,9.01e-11,39;UBERON:0002020,4.75e-10,34;UBERON:0003528,3.17e-08,29;UBERON:0002791,3.17e-08,29;UBERON:0001893,3.17e-08,29;UBERON:0002021,2.67e-07,10;UBERON:0000411,2.67e-07,10;UBERON:0001950,2.67e-07,10 | |||
|phase1_expression=23.5418805244047,0.348975407639361,0.909998478779072,2.11724947914781,2.50447864973174,7.21880869221126,5.60670337429262,11.1046058159756,5.20918271961167,5.61754863172784,10.6155140299813,12.4444568032725,9.92964233600993,7.34331380319578,8.66085380720723,8.90891176515234,3.49780939064073,16.2463015159492,17.824876368746,16.9755860719212,29.0848052316659,17.1773345577532,21.1571829202538,5.11975752938901,4.81759490241057,3.44539178469012,3.01533397311352,3.01659725760245,3.42042155021473,4.28451220591882,3.99114919179548,14.6057054895715,14.1464901144451,15.8481681015439,18.1976520443303,18.1195763440757,24.7044921077467,2.51118978442145,1.5626706890476,0,1.17646297606203,1.36609096991689,0.971020706062307,3.77690453926732,4.35920804243913,4.40512205188036,2.34717403304412,6.1047043786525,4.17403747195497,5.24960727500565,5.17949760013841,8.62515386189829,15.7715649694272,9.42970784614748,17.4768775554081,2.82985379639542,2.86533439938757,4.12537673821954,16.7922662513466,10.0508286061686,20.2826049121977,3.38844532069132,0,1.3498495759221,0.988866362566974,2.1314403448383,4.19440154725767,6.14749288514487,23.8486108309499,22.1409738863973,18.9292465216244,32.2785612376298,26.9459619960969,17.1487118900936,12.555756703389,16.5459381589804,85.8903871795232,67.1635398328087,83.5619540913964,17.9365351313064,12.9912453915422,15.106487746146,64.491272769319,81.6005784545936,78.843895852834,28.5789727909458,23.9184423742493,18.8263440283554,6.13382165998791,9.97544593409569,16.8121403446973,6.0229671388697,0.679971333707751,4.31762553310254,1.94932925234301,0.896053774194671,9.12888730856387,0,0,0,26.4785629180159,0,0,0,15.5873549528074,10.1343946190039,10.6160133453104,10.1623652949963,21.7507822263624,15.8833088799362,17.5220180033797,11.2652226975492,9.91646638201052,12.6607018064203,16.9327738275415,9.42499434972566,24.9666917411718,6.07317299063629,5.30766331169925,9.38247729694973,9.49618529379692,8.24287930329878,20.5030937339934,53.5788858531131,60.1112048554616,8.9409969323007,9.58520996047362,6.59893004092748,8.25956475974921,83.5831767878911,70.9125934368871,22.3664746760899,70.7464983182565,78.2489299430811,72.725815595846,71.7106382759489,18.6366035846079,18.9098595327341,45.7428192764951,11.995185785529,22.9011979614359,22.5304062344803,23.9482632641114,23.6606564002073,29.9360596265843,25.7508577772548,27.5483070205603,30.5269977472039,16.383167462896,20.6125627382923,25.1610107554447,17.535658594206,24.190110682627,17.0643561595862,14.1989674121481,20.5005294823048,5.61770549850588,5.91900186363845,11.0823764764281,23.1980865239762,16.6513502586578,18.3663302690235,19.4130683179872,19.479658942993,18.5120535464854,14.1845706297749,13.6819434713806,17.8650973821769,22.3801395882333,12.6408947340903,15.4030738137126,13.3041988557052,12.0752563410078,13.6890547135579,68.3442332833414,29.7394329776132,7.93005079161115,6.87571473325215,20.049095550312,19.9723537799977,21.9074684247559,21.5801371346977,20.2364019898832,16.5496294717926,9.49058123089023,12.6818195137488,11.8127548136127,13.131127154716,11.6978452271472,9.88701349519644,7.78096979548899,10.3553462092271,12.1387456609972,21.1359748327998,18.0332377076929,21.5870407516033,19.3952487167626,22.233054905231,21.6901322336203,24.7985048605732,17.8978549739167,17.6457944408175,3.26097889795864,12.6802280344231,15.528160613943,7.42044970870017,10.5487263122022,14.2294524253926,9.42115651591253,11.2201493605816,12.1601420081277,5.76578967694971,4.31304619582064,9.30352369171258,4.99260276983297,4.54641980304801,4.66433275156972,2.41221760681684,17.1820466854942,22.5494780006877,16.4594626206446,17.3139987490692,18.3058393665032,17.5881570313907,16.1869675802489,19.9036320814955,17.6551361398934,15.723992965063,14.8292934851463,15.0754249538479,16.4050732772601,21.4080606700637,13.5712155545345,5.98296252200581,8.85175691434265,13.7968373152366,86.3762174134321,85.0956844659395,0,12.1186045058099,28.3957397474631,25.7689571235781,26.9279247165999,13.6212214832955,19.1606859710859,24.6276581786284,25.0982635038434,19.8733983379692,24.903130010631,53.0180172095982,17.458630480617,12.1084610493734,18.5691133663077,16.1670720513085,17.2568679841952,16.2663026223838,14.8138542912728,25.2730806872903,16.832207894204,17.5238034328039,25.0675444373175,23.2661586865604,16.7553767840819,21.8065362975713,17.9211634577498,16.5016869197099,30.2991249120871,27.1892251987278,17.2047049431063,23.148399783412,19.6847659342924,18.1936193954112,21.3913726782757,16.1366423030738,6.10146440965647,18.2175580942885,37.7103560673985,6.26567761177624,10.9795810153216,9.52944213864862,7.87857470420701,6.72977688954751,11.3677526285642,78.0640521464246,8.54354403989263,11.7640514739037,12.9636169158798,9.04168593622517,10.2520670790769,8.46479240864134,18.6976272993241,15.3946597556024,12.9907975376158,5.72802370809068,20.7200075795644,16.8755157715284,15.4447637375176,10.245326504709,11.1364907510551,8.22672512947406,10.083721598491,4.4498510137285,17.88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| |||
|short_description=p1@Fam73a | |||
}} |
Revision as of 06:10, 6 August 2015
Short description: | p1@Fam73a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fam73a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000068243, ENSMUST00000073089, NM_001162375, NM_174868, uc008rte.2, uc008rtf.2, uc008rtg.2, uc012czl.1_5end |
EntrezGene: | 215708 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.22e-08 | 33 |
neuronal stem cell | 5.22e-08 | 33 |
neuroblast | 5.22e-08 | 33 |
electrically signaling cell | 5.22e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 4.97e-19 | 64 |
neural plate | 4.97e-19 | 64 |
presumptive neural plate | 4.97e-19 | 64 |
central nervous system | 1.12e-16 | 73 |
regional part of nervous system | 8.49e-16 | 54 |
ecto-epithelium | 8.97e-16 | 73 |
ectoderm-derived structure | 1.20e-15 | 95 |
ectoderm | 1.20e-15 | 95 |
presumptive ectoderm | 1.20e-15 | 95 |
nervous system | 1.57e-15 | 75 |
neural tube | 1.57e-14 | 52 |
neural rod | 1.57e-14 | 52 |
future spinal cord | 1.57e-14 | 52 |
neural keel | 1.57e-14 | 52 |
pre-chordal neural plate | 3.19e-14 | 49 |
structure with developmental contribution from neural crest | 3.46e-14 | 92 |
brain | 1.68e-12 | 47 |
future brain | 1.68e-12 | 47 |
regional part of brain | 5.48e-12 | 46 |
anterior neural tube | 2.20e-11 | 40 |
regional part of forebrain | 9.01e-11 | 39 |
forebrain | 9.01e-11 | 39 |
future forebrain | 9.01e-11 | 39 |
gray matter | 4.75e-10 | 34 |
brain grey matter | 3.17e-08 | 29 |
regional part of telencephalon | 3.17e-08 | 29 |
telencephalon | 3.17e-08 | 29 |
occipital lobe | 2.67e-07 | 10 |
visual cortex | 2.67e-07 | 10 |
neocortex | 2.67e-07 | 10 |