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Coexpression cluster:C101

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Full id: C101_small_cerebellum_maxillary_colon_parietal_epididymis_merkel



Phase1 CAGE Peaks

Hg19::chr11:1671395..1671423,-p@chr11:1671395..1671423
-
Hg19::chr11:2291849..2291858,-p4@ASCL2
Hg19::chr11:2292201..2292212,-p3@ASCL2
Hg19::chr11:2292226..2292270,-p1@ASCL2
Hg19::chr11:32635079..32635088,-p@chr11:32635079..32635088
-
Hg19::chr11:32635094..32635099,-p@chr11:32635094..32635099
-
Hg19::chr11:32635116..32635125,-p@chr11:32635116..32635125
-
Hg19::chr11:32635130..32635137,-p@chr11:32635130..32635137
-
Hg19::chr11:32635146..32635151,-p@chr11:32635146..32635151
-
Hg19::chr11:33826559..33826594,+p@chr11:33826559..33826594
+
Hg19::chr11:61976154..61976157,+p2@SCGB2A1
Hg19::chr11:62009653..62009664,+p4@SCGB1D2
Hg19::chr11:62009732..62009752,+p3@SCGB1D2
Hg19::chr11:62009756..62009783,+p1@SCGB1D2
Hg19::chr11:90181744..90181756,+p@chr11:90181744..90181756
+
Hg19::chr11:95746788..95746792,+p@chr11:95746788..95746792
+
Hg19::chr12:2693428..2693469,+p@chr12:2693428..2693469
+
Hg19::chr12:31272124..31272129,-p3@uc001rjy.2
Hg19::chr13:24232177..24232184,-p@chr13:24232177..24232184
-
Hg19::chr13:24289097..24289102,-p@chr13:24289097..24289102
-
Hg19::chr13:39261206..39261220,+p1@FREM2
Hg19::chr13:39332751..39332761,+p@chr13:39332751..39332761
+
Hg19::chr15:23810119..23810126,+p3@MKRN3
Hg19::chr15:23827035..23827038,+p@chr15:23827035..23827038
+
Hg19::chr15:32270259..32270270,+p@chr15:32270259..32270270
+
Hg19::chr15:67649588..67649598,+p8@IQCH
Hg19::chr16:50420325..50420329,+p@chr16:50420325..50420329
+
Hg19::chr16:50583403..50583421,+p@chr16:50583403..50583421
+
Hg19::chr16:50586808..50586853,+p@chr16:50586808..50586853
+
Hg19::chr16:50594555..50594558,+p@chr16:50594555..50594558
+
Hg19::chr16:50609021..50609023,+p@chr16:50609021..50609023
+
Hg19::chr16:50655573..50655586,-p@chr16:50655573..50655586
-
Hg19::chr16:50659419..50659431,+p@chr16:50659419..50659431
+
Hg19::chr16:50664175..50664188,+p@chr16:50664175..50664188
+
Hg19::chr16:50664743..50664753,+p@chr16:50664743..50664753
+
Hg19::chr16:50666194..50666212,+p@chr16:50666194..50666212
+
Hg19::chr16:50666256..50666270,+p@chr16:50666256..50666270
+
Hg19::chr16:50667519..50667529,+p@chr16:50667519..50667529
+
Hg19::chr16:50667622..50667641,+p@chr16:50667622..50667641
+
Hg19::chr16:50667686..50667701,-p@chr16:50667686..50667701
-
Hg19::chr16:50680042..50680056,+p@chr16:50680042..50680056
+
Hg19::chr17:37764898..37764905,-p@chr17:37764898..37764905
-
Hg19::chr17:47946107..47946118,+p@chr17:47946107..47946118
+
Hg19::chr18:10456027..10456060,-p@chr18:10456027..10456060
-
Hg19::chr18:10456176..10456181,-p@chr18:10456176..10456181
-
Hg19::chr18:10456186..10456191,-p@chr18:10456186..10456191
-
Hg19::chr18:10456221..10456228,-p@chr18:10456221..10456228
-
Hg19::chr18:10525925..10525936,+p7@NAPG
Hg19::chr18:3459683..3459693,+p@chr18:3459683..3459693
+
Hg19::chr18:35250402..35250410,+p@chr18:35250402..35250410
+
Hg19::chr18:36955178..36955187,-p@chr18:36955178..36955187
-
Hg19::chr18:52989415..52989429,-p63@TCF4
Hg19::chr18:53165290..53165321,-p@chr18:53165290..53165321
-
Hg19::chr18:72611750..72611755,+p@chr18:72611750..72611755
+
Hg19::chr18:72611763..72611770,+p@chr18:72611763..72611770
+
Hg19::chr19:13974949..13974960,+p@chr19:13974949..13974960
+
Hg19::chr19:18060992..18060999,+p@chr19:18060992..18060999
+
Hg19::chr19:18061245..18061251,+p@chr19:18061245..18061251
+
Hg19::chr19:18061742..18061752,-p@chr19:18061742..18061752
-
Hg19::chr19:30433219..30433233,+p3@URI1
Hg19::chr19:30495196..30495205,+p@chr19:30495196..30495205
+
Hg19::chr19:30495593..30495598,+p@chr19:30495593..30495598
+
Hg19::chr19:42637515..42637525,+p@chr19:42637515..42637525
+
Hg19::chr19:50832943..50832951,+p9@NR1H2
Hg19::chr19:54385244..54385256,-p@chr19:54385244..54385256
-
Hg19::chr1:156828879..156828914,-p1@INSRR
Hg19::chr1:156830458..156830475,-p@chr1:156830458..156830475
-
Hg19::chr1:183486836..183486856,+p@chr1:183486836..183486856
+
Hg19::chr1:183486863..183486872,+p@chr1:183486863..183486872
+
Hg19::chr1:183486877..183486880,+p@chr1:183486877..183486880
+
Hg19::chr1:216798763..216798766,-p@chr1:216798763..216798766
-
Hg19::chr1:216799658..216799665,-p@chr1:216799658..216799665
-
Hg19::chr1:230889639..230889650,+p@chr1:230889639..230889650
+
Hg19::chr1:81910488..81910495,+p@chr1:81910488..81910495
+
Hg19::chr20:2397889..2397925,+p@chr20:2397889..2397925
+
Hg19::chr20:33539679..33539680,-p7@GSS
Hg19::chr20:33539681..33539688,-p5@GSS
Hg19::chr20:44664535..44664572,-p@chr20:44664535..44664572
-
Hg19::chr20:57562489..57562529,+p10@TH1L
Hg19::chr20:5903677..5903685,+p@chr20:5903677..5903685
+
Hg19::chr20:5903794..5903803,-p@chr20:5903794..5903803
-
Hg19::chr2:130067563..130067579,-p@chr2:130067563..130067579
-
Hg19::chr2:130067584..130067595,-p@chr2:130067584..130067595
-
Hg19::chr2:130067633..130067649,-p@chr2:130067633..130067649
-
Hg19::chr2:130067654..130067664,-p@chr2:130067654..130067664
-
Hg19::chr2:130076372..130076376,-p@chr2:130076372..130076376
-
Hg19::chr2:165698803..165698810,-p22@COBLL1
Hg19::chr2:166522142..166522151,+p@chr2:166522142..166522151
+
Hg19::chr2:172967017..172967029,-p8@DLX2
Hg19::chr2:172967225..172967232,-p7@DLX2
Hg19::chr2:172967242..172967265,-p2@DLX2
Hg19::chr2:172967266..172967271,-p6@DLX2
Hg19::chr2:172967276..172967296,-p3@DLX2
Hg19::chr2:172967323..172967336,-p4@DLX2
Hg19::chr2:172967353..172967365,-p5@DLX2
Hg19::chr2:175198519..175198542,-p@chr2:175198519..175198542
-
Hg19::chr2:183381027..183381046,-p@chr2:183381027..183381046
-
Hg19::chr2:183381629..183381645,-p@chr2:183381629..183381645
-
Hg19::chr2:200298219..200298241,-p@chr2:200298219..200298241
-
Hg19::chr2:37126075..37126076,-p@chr2:37126075..37126076
-
Hg19::chr2:51259507..51259525,-p22@NRXN1
Hg19::chr2:51259528..51259554,-p10@NRXN1
Hg19::chr3:65583115..65583144,-p@chr3:65583115..65583144
-
Hg19::chr3:80727046..80727051,-p@chr3:80727046..80727051
-
Hg19::chr4:107157608..107157617,-p@chr4:107157608..107157617
-
Hg19::chr4:107158685..107158699,-p@chr4:107158685..107158699
-
Hg19::chr5:2334898..2334930,-p@chr5:2334898..2334930
-
Hg19::chr5:33986219..33986229,-p@chr5:33986219..33986229
-
Hg19::chr5:33988502..33988531,-p@chr5:33988502..33988531
-
Hg19::chr6:101902072..101902081,-p@chr6:101902072..101902081
-
Hg19::chr6:102074293..102074306,+p@chr6:102074293..102074306
+
Hg19::chr6:102074319..102074330,+p@chr6:102074319..102074330
+
Hg19::chr6:102074343..102074363,+p@chr6:102074343..102074363
+
Hg19::chr6:102074381..102074390,+p@chr6:102074381..102074390
+
Hg19::chr6:102074407..102074425,+p@chr6:102074407..102074425
+
Hg19::chr6:102074434..102074437,+p@chr6:102074434..102074437
+
Hg19::chr6:120555693..120555708,+p@chr6:120555693..120555708
+
Hg19::chr6:131967608..131967633,+p@chr6:131967608..131967633
+
Hg19::chr6:43858663..43858693,+p4@LOC100132354
Hg19::chr6:43858741..43858765,+p2@LOC100132354
Hg19::chr6:43858766..43858801,+p1@LOC100132354
Hg19::chr7:130418367..130418376,+p@chr7:130418367..130418376
+
Hg19::chr7:130418395..130418402,+p@chr7:130418395..130418402
+
Hg19::chr7:157794309..157794344,-p@chr7:157794309..157794344
-
Hg19::chr7:17978865..17978889,-p@chr7:17978865..17978889
-
Hg19::chr7:17979403..17979425,+p@chr7:17979403..17979425
+
Hg19::chr7:17980054..17980065,-p3@SNX13
Hg19::chr7:18125931..18125935,+p@chr7:18125931..18125935
+
Hg19::chr7:18126240..18126298,+p15@HDAC9
Hg19::chr7:18126442..18126465,+p9@HDAC9
Hg19::chr7:18126557..18126641,+p6@HDAC9
Hg19::chr7:18127565..18127576,+p1@ENST00000455069
Hg19::chr7:18206831..18206833,+p@chr7:18206831..18206833
+
Hg19::chr7:18247180..18247182,+p@chr7:18247180..18247182
+
Hg19::chr7:18390519..18390547,+p@chr7:18390519..18390547
+
Hg19::chr7:18535224..18535233,+p41@HDAC9
Hg19::chr7:18535300..18535311,+p20@HDAC9
Hg19::chr7:18535321..18535343,+p7@HDAC9
Hg19::chr7:18575650..18575653,-p@chr7:18575650..18575653
-
Hg19::chr7:18587136..18587138,+p@chr7:18587136..18587138
+
Hg19::chr7:18624926..18624945,+p@chr7:18624926..18624945
+
Hg19::chr7:18625020..18625033,+p@chr7:18625020..18625033
+
Hg19::chr7:18668902..18668905,+p@chr7:18668902..18668905
+
Hg19::chr7:18672094..18672104,+p@chr7:18672094..18672104
+
Hg19::chr7:18687532..18687536,+p@chr7:18687532..18687536
+
Hg19::chr7:27224021..27224026,+p17@HOXA11-AS1
Hg19::chr7:27282174..27282223,-p1@ENST00000519050
Hg19::chr7:27282385..27282394,+p3@EVX1
Hg19::chr7:27903656..27903678,-p11@JAZF1
Hg19::chr7:29233305..29233342,+p@chr7:29233305..29233342
+
Hg19::chr7:29334902..29334911,+p@chr7:29334902..29334911
+
Hg19::chr7:73140837..73140841,-p@chr7:73140837..73140841
-
Hg19::chr7:75909929..75909966,+p@chr7:75909929..75909966
+
Hg19::chr7:75910322..75910332,+p@chr7:75910322..75910332
+
Hg19::chr8:108266644..108266647,-p@chr8:108266644..108266647
-
Hg19::chr8:108323457..108323466,-p@chr8:108323457..108323466
-
Hg19::chr8:108323495..108323502,-p@chr8:108323495..108323502
-
Hg19::chr8:108323562..108323573,-p@chr8:108323562..108323573
-
Hg19::chr8:108323707..108323711,-p@chr8:108323707..108323711
-
Hg19::chr8:108324027..108324036,-p@chr8:108324027..108324036
-
Hg19::chr8:108446884..108446900,-p@chr8:108446884..108446900
-
Hg19::chr8:108509590..108509613,-p6@ANGPT1
Hg19::chr8:108509895..108509902,-p16@ANGPT1
Hg19::chr8:108510224..108510248,-p3@ANGPT1
Hg19::chr8:123583818..123583821,-p@chr8:123583818..123583821
-
Hg19::chr8:20040601..20040630,-p2@SLC18A1
Hg19::chr8:20040638..20040652,-p1@SLC18A1
Hg19::chr8:20472433..20472439,-p1@ENST00000516135
Hg19::chr8:38399534..38399540,-p@chr8:38399534..38399540
-
Hg19::chr8:38411258..38411272,-p@chr8:38411258..38411272
-
Hg19::chr8:49730848..49730871,+p@chr8:49730848..49730871
+
Hg19::chr8:6698718..6698744,+p@chr8:6698718..6698744
+
Hg19::chr8:6817717..6817731,-p1@DEFA9P
Hg19::chr8:6887048..6887055,-p1@DEFA11P
Hg19::chr8:6897005..6897008,-p1@DEFA7P
Hg19::chr8:6914153..6914160,-p2@DEFA5
Hg19::chr9:73778694..73778720,-p@chr9:73778694..73778720
-
Hg19::chr9:73829940..73829948,-p@chr9:73829940..73829948
-
Hg19::chr9:73881874..73881877,-p@chr9:73881874..73881877
-
Hg19::chr9:73893947..73893951,-p@chr9:73893947..73893951
-
Hg19::chr9:73894992..73894993,-p@chr9:73894992..73894993
-
Hg19::chr9:73947041..73947056,-p@chr9:73947041..73947056
-
Hg19::chr9:73947245..73947253,-p@chr9:73947245..73947253
-
Hg19::chr9:74062623..74062652,-p@chr9:74062623..74062652
-
Hg19::chr9:74062701..74062711,-p@chr9:74062701..74062711
-
Hg19::chr9:74167593..74167609,-p@chr9:74167593..74167609
-
Hg19::chr9:74167667..74167687,-p@chr9:74167667..74167687
-
Hg19::chr9:74167724..74167739,-p@chr9:74167724..74167739
-
Hg19::chr9:74167989..74167992,-p@chr9:74167989..74167992
-
Hg19::chr9:74384373..74384388,-p@chr9:74384373..74384388
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016481negative regulation of transcription0.00569544948163178
GO:0045934negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.00569544948163178
GO:0031324negative regulation of cellular metabolic process0.00755964970404332
GO:0009892negative regulation of metabolic process0.00952977996252333
GO:0016564transcription repressor activity0.0151647357180119
GO:0007275multicellular organismal development0.0151647357180119
GO:0048523negative regulation of cellular process0.0157689292058636
GO:0006355regulation of transcription, DNA-dependent0.0157689292058636
GO:0004363glutathione synthase activity0.0157689292058636
GO:0048519negative regulation of biological process0.0157689292058636
GO:0006351transcription, DNA-dependent0.0157689292058636
GO:0032774RNA biosynthetic process0.0157689292058636
GO:0045449regulation of transcription0.021642745754459
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0223548243104183
GO:0006350transcription0.0241386646810479
GO:0010468regulation of gene expression0.0241386646810479
GO:0042742defense response to bacterium0.0254107438310059
GO:0031323regulation of cellular metabolic process0.0254107438310059
GO:0003700transcription factor activity0.0261464457060413
GO:0009617response to bacterium0.0261464457060413
GO:0003714transcription corepressor activity0.0261464457060413
GO:0006357regulation of transcription from RNA polymerase II promoter0.0261464457060413
GO:0008134transcription factor binding0.0261464457060413
GO:0019222regulation of metabolic process0.0261464457060413
GO:0016070RNA metabolic process0.0261464457060413
GO:0005497androgen binding0.0263168210860954
GO:0048731system development0.0263168210860954
GO:0044451nucleoplasm part0.0263168210860954
GO:0000122negative regulation of transcription from RNA polymerase II promoter0.0271229937447896
GO:0032502developmental process0.0281826313299467
GO:0008504monoamine transmembrane transporter activity0.0281826313299467
GO:0005515protein binding0.0295470862423253
GO:0015844monoamine transport0.0310627333598091
GO:0065007biological regulation0.0310627333598091
GO:0005654nucleoplasm0.0310627333598091
GO:0050794regulation of cellular process0.0350130822848958
GO:0045843negative regulation of striated muscle development0.0367532869569296
GO:0006750glutathione biosynthetic process0.0367532869569296
GO:0006952defense response0.0386664540593856
GO:0042221response to chemical stimulus0.0386664540593856
GO:0017053transcriptional repressor complex0.0425549775703636
GO:0032501multicellular organismal process0.0425615836320144
GO:0048856anatomical structure development0.0427035378600283
GO:0006366transcription from RNA polymerase II promoter0.0427035378600283
GO:0045892negative regulation of transcription, DNA-dependent0.0427035378600283
GO:0051707response to other organism0.0427035378600283
GO:0050789regulation of biological process0.0427035378600283
GO:0005667transcription factor complex0.0427035378600283
GO:0050832defense response to fungus0.0427035378600283
GO:0016202regulation of striated muscle development0.0451811701326321
GO:0045893positive regulation of transcription, DNA-dependent0.0451811701326321
GO:0031981nuclear lumen0.0451811701326321
GO:0050821protein stabilization0.0451811701326321
GO:0016566specific transcriptional repressor activity0.0451811701326321
GO:0007417central nervous system development0.0472137525682012
GO:0007399nervous system development0.0472205833852633



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
adult organism1.68e-31115
central nervous system2.40e-2782
regional part of nervous system5.84e-2794
nervous system5.84e-2794
neural tube2.17e-2457
neural rod2.17e-2457
future spinal cord2.17e-2457
neural keel2.17e-2457
brain5.72e-2269
future brain5.72e-2269
anterior neural tube1.49e-2042
regional part of forebrain3.80e-2041
forebrain3.80e-2041
future forebrain3.80e-2041
regional part of brain6.74e-2059
ectoderm1.75e-17173
presumptive ectoderm1.75e-17173
ectoderm-derived structure1.08e-16169
gray matter1.67e-1634
brain grey matter1.67e-1634
telencephalon1.97e-1634
regional part of telencephalon6.47e-1633
cerebral hemisphere1.50e-1532
neurectoderm2.13e-1490
regional part of cerebral cortex1.01e-1322
neural plate1.24e-1386
presumptive neural plate1.24e-1386
anterior region of body1.33e-13129
craniocervical region1.33e-13129
cerebral cortex2.21e-1325
pallium2.21e-1325
head4.99e-13123
neocortex8.50e-1320
pre-chordal neural plate8.89e-1061
organ4.67e-07511
Disease
Ontology termp-valuen
cell type cancer3.24e-07143


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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