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MCL coexpression mm9:2332

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Phase1 CAGE Peaks

 Short description
Mm9::chr2:140497142..140497163,-p3@Flrt3
Mm9::chr2:140497164..140497175,-p4@Flrt3
Mm9::chr2:140497176..140497194,-p1@Flrt3
Mm9::chr2:140497198..140497212,-p2@Flrt3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
ecto-epithelium1.39e-1473
ectoderm-derived structure1.69e-1495
ectoderm1.69e-1495
presumptive ectoderm1.69e-1495
nervous system1.11e-1275
neurectoderm2.13e-1264
neural plate2.13e-1264
presumptive neural plate2.13e-1264
central nervous system7.11e-1273
pre-chordal neural plate1.99e-1149
neural tube5.44e-1152
neural rod5.44e-1152
future spinal cord5.44e-1152
neural keel5.44e-1152
regional part of nervous system6.63e-1154
anterior neural tube8.11e-1140
regional part of brain1.72e-1046
regional part of forebrain2.36e-1039
forebrain2.36e-1039
future forebrain2.36e-1039
brain2.94e-1047
future brain2.94e-1047
multi-cellular organism1.26e-09333
embryo3.22e-08320
gray matter1.49e-0734
structure with developmental contribution from neural crest1.88e-0792
brain grey matter2.84e-0729
regional part of telencephalon2.84e-0729
telencephalon2.84e-0729


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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