Coexpression cluster:C243: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|pathway_enrichment=3.89935446244208e-05;0.0246829137472584;3;106;Amoebiasis (KEGG):05146!0.000120675008846136;0.0381936402998021;3;155;IL-1 up reg. targets (Netpath):NetPath_13 | |pathway_enrichment=3.89935446244208e-05;0.0246829137472584;3;106;Amoebiasis (KEGG):05146!0.000120675008846136;0.0381936402998021;3;155;IL-1 up reg. targets (Netpath):NetPath_13 | ||
|tfbs_overrepresentation=0.029654,0.00560851,8.74432e-07,0.226179,0.0240204,0.287187,0.00145729,0.000229007,0.456595,0.379626,0.297576,0.192911,0.000640827,0.706192,0.0790629,0.0313481,0.0238465,0.124446,0.262581,0.0203027,0.736287,0.0174113,0.0744787,0.113245,0.540883,0.162531,0.0319936,0.254319,0.776496,0.536283,0.247645,0.000108488,0.283654,0.00467189,0.134248,0.000280393,0.242552,0.552991,0.904719,0.000344534,0.285505,0.0774149,0.522381,0.00510454,0.420523,0.147771,0.508634,0.165941,0.0231855,0.42208,0.0370288,0.272044,0.385076,0.534023,0.22482,0.162149,0.158364,0.277486,0.189971,0.151174,0.421693,0.569363,0.352441,0.178241,0.642552,0.245786,0.541729,0.678434,0.49109,0.964953,0.262759,0.139389,0.0946336,0.676177,0.128532,0.271336,0.844377,0.559169,0.0336509,0.124926,0.115679,0.508771,0.046879,0.187883,0.0281152,0.168748,0.124713,0.263194,1.89408e-06,0.695181,0.0849568,0.00272507,0.548312,0.223774,0.486734,0.0268778,0.014249,0.0898786,0.532515,0.00114163,0.024678,0.381911,0.00821361,0.49966,0.302837,0.535198,0.136307,0.0049877,0.320365,0.000932812,0.00156064,0.469599,0.0809094,0.279014,0.858647,0.467131,0.313891,0.0934714,0.0222126,0.00613485,0.122416,0.0810257,0.522815,0.0850314,0.050859,0.69179,0.254138,0.239088,0.00632304,0.495877,0.0277158,0.0153052,0.660463,0.344645,0.447097,0.349658,0.707562,0.0885012,0.127185,0.0700801,0.34452,0.0142643,0.00393708,0.377248,0.000124368,7.0263e-05,0.126608,0.800731,0.165667,0.0333727,0.0576836,0.540883,0.303955,0.389775,0.550764,0.029581,0.759378,0.00974595,0.0754356,0.466854,0.0232747,0.840509,0.195346,0.337509,0.00733087,0.0752167,0.173011,0.241948,0.175191,0.0234561,0.491418,0.139582,0.179192,0.0039815,0.451275,0.00868121,0.00227847,0.501441,0.15638,0.143807,0.0428943,0.908847,0.0930862,0.190893,0.167479,0.409154,0.00159243,0.528463,0.0768873,0.141711,0.614627,0.18476,0.43156,0.0537388,0.37502,0.586864,0.189616,0.000184601,0.367565,0.16701,0.51139,0.680866,0.436816,0.682145,0.00647709,0.106125,0.0171146,0.0858922,0.00147342,5.96401e-06,0.57717,0.146608,0.0108343,0.00739669,0.000102882,0.128855,0.235303,0.310014,0.118975,0.321326,0.153302,0.00315756,0.0394009,0.22276,0.168127,0.708961,0.143197,0.229138,0.0290528,0.106184,0.000153703,0.000384522,0.185319,0.428396,0.116658,0.535227,0.588088,0.487614,0.413704,0.64634,0.0135657,0.171357,0.565974,0.00129112,0.193845,0.136765,0.0214799,3.11706e-06,0.00700011,0.00246776,0.000467329,0.0866553,0.32577,0.0433943,0.564185,0.617872,0.0601326,0.0100531,0.381039,0.00413638,0.114478,0.0278751,0.000157443,0.0428988,0.474771,0.203793,0.459383,0.104045,0.404919,0.421739,0.0418272,0.336903,0.296964,0.0849512,0.232378,0.508907,0.0158321,0.00816441,0.000218202,1.00793e-06,0.00860635,3.85617e-06,3.71926e-08,1.11968e-06,1.9284e-09,0.0496244,0.651565,0.000159543,0.357188,0.0217011,0.00860697,0.0378023,0.322686,0.00155032,0.000653644,0.00418606,0.00696523,0.00574185,0.000154471,0.000646608,2.62169e-05,1.96476e-16,0.526742,6.30627e-06,0.034165,0.000141463,0.0657769,3.00409e-05,0.299787,0.00202398,0.000681909,0.00343173,4.17717e-06,0.000499519,7.18391e-05,1.05415e-06,0.0239224,6.8447e-05,0.17377,0.000156408,0.000176979,5.78746e-08,0.0975725,0.020506,0.100241,0.00478059,0.573039,3.26021e-07,0.000938391,0.0130989,0.00845602,4.04472e-09,0.00641616,0.00587618,0.000112954,1.79922e-05,0.357903,0.000464142,0.000109295,0.713097,8.61976e-07,1.09364e-06,0.000810377,0.840075,1.20097e-06,0.725448,6.58728e-05,0.00979263,0.00268058,0.000124513,4.71607e-06,5.10802e-05,0.0359142,0.00299755,0.264705,0.00108736,0.231494,0.000355617,0.0527765,0.0147149,5.1143e-08,0.086841,0.130969,0.00265507,0.000315488,5.58461e-07,3.8818e-08,0.647999,0.0176268,0.000104046,6.65572e-08,0.207904,0.172429,0.110286,0.000210965,0.0162919,1.70559e-06,0.00256709,0.00107053,4.24728e-08,0.435134,2.45898e-05,1.83247e-05,0.0194871,2.30356e-06,0.0332069,1.03763e-05,0.0001138,0.00303955,0.000101374,1.59395e-08,0.00742361,0.000340582,2.28057e-06,5.70933e-07,0.0426335,0.335605,0.00929336,0.00957812,0.0206675,1.46624e-06,0.0041075,0.0223708,0.00343956,0.087739,0.0586962,0.0569987,0.105756,0.000103674,0.0133064,7.38441e-08,0.0299272,0.00064764,5.7942e-05,0.00919812,1.76348e-07,2.74684e-08,0.0629717,0.00342047,0.0234545,0.0122255,0.00198221,1.34006e-07,0.253151,0.00140111,0.000150912,0.119379,7.4073e-07,0.000463846,0.0130044,1.02734e-06,7.86556e-08,0.00092887,0.0237014,1.21732e-05,0.403158,0.000165027,0.0198178,0.000762528,3.53801e-11,0.0136462,0.0283274,0.215574,0.0428188,0.00825467,0.00108868,0.0227034,0.0445374,0.000190168,4.56585e-08,7.84384e-05,0.001206,5.65583e-05,0.00336272,0.288764,0.01236,0.148892,0.650198,0.902452,0.438423,0.0247929,0.00910703,0.0468442,0.786426,0.281585,0.0768464,0.0023647,0.0237979,0.435694,0.55785,0.000531618,0.23796,2.25807e-05,0.00547122,1.261e-05,0.333366,0.0184872,0.282033,0.0187278,0.00902464,0.799875,0.217518,0.130378,0.186799,0.600642,0.0314351,0.232938,0.0441814,0.157038,0.00159044,0.0689725,0.0368041,0.250009,0.628241,0.206577,0.0140553,0.60934,0.470683,0.360882,0.168085,0.0685324,0.000872342,0.0199081,0.369244,0.263904,0.0940742,0.229449,0.120293,0.00937537,0.00028253,0.0284837,0.721083,0.129347,0.813924,0.00285194,0.187407,0.676307,0.00138242,0.00777519,0.0846562,0.142141,0.305605,0.00060409,0.428635,0.260923,0.20384,0.62694,0.986367,0.000333809,0.450332,0.560297,0.39742,0.098041,0.519709,0.0045345,0.00988063,0.467464,0.287736,0.236344,0.7123,0.273718,0.0922735,0.452704,0.177467,0.109532,7.85198e-09,0.000710116,0.438246,0.286339,0.0448855,0.00431685,0.0009279,0.0964441,0.446626,0.122959,0.2345,0.00348259,0.474544,0.127393,0.102265,2.27967e-05,0.169215,0.676157,0.776464,0.0353888,0.353942,0.881977,0.197476,0.412585,0.0424234,0.0707139,0.165037,0.813208,0.021385,0.542847,0.90289,0.000244129,0.53958,3.28355e-06,0.00133669,1.25477e-06,0.284181,0.179102,0.00939595,0.207928,0.0816996,0.000107151,0.173105,0.151749,0.123928,0.525372,0.509258,0.244206,0.0113775,0.58869,0.000619262,0.0279476,0.735318,0.434672,0.0641146,0.71737,0.477488,0.000193686,2.89352e-05,0.62314,0.045673,0.242579,0.114092,0.421708,0.0366055,0.160536,0.133408,0.412669,0.0405364,0.00465055,6.70955e-05,0.295545,0.00079248,0.902439,0.102439,0.292198,0.487893,0.296233,0.590962,3.9498e-08,0.683792,0.000314681,0.00760183,0.156098,0.000344719,0.299367,0.48534,0.103643,0.684465,0.000144083,0.0821935,0.417841,0.65984,0.350639,0.137912,0.0208973,0.0677039,0.551074,2.31369e-06,0.422172,0.575438,0.169153,0.385843,0.104038,0.193975,0.505581,0.265832,0.207176,0.0832818,0.383729,0.0355922,0.0629766,0.332166,0.0945156,0.660143,0.122568,0.424895,0.0513546,0.805397,0.00781172,0.0877882,0.31368,0.305653,0.0639109,0.00237228,0.0853348,0.332531,0.350358,0.000253252,0.0394175,0.000389027,0.745325,0.527382,0.315227,0.320782,0.0117564,0.84716,0.00136306,0.132324,0.105133,0.752408,0.201913,0.00852573,0.100657,0.00985371,0.0796832,0.321873,0.00198501,0.374909,0.523911,0.0669843,0.54512,0.0288953,0.000374947,0.0630753,0.573886,0.0241521,0.0167978,0.0248992,0.377877,0.125686,0.0323833,0.00248428,0.964886,0.189301,0.0729179,0.0375835,0.039646,0.00195623,0.00862703,0.00578254,0.595362,0.0012776,0.659986,0.0106732,0.489714,4.27579e-05,0.490228,0.0403308,0.000349945,0.00152661,0.73826,0.295082,0.46993,5.15387e-07,0.257861,0.000498053,1.27358e-06,0.0735213,0.00641582,0.0554381,0.000419704,5.85505e-08,0.00333406,0.0104548,0.00937681,0.385693,2.91088e-07,1.41419e-06,0.010237,1.40999e-09,0.043882,7.24027e-07,0.0357575,0.00168255,0.000180569,0.00175923,0.0213339,0.509611,1.12153e-05,2.36101e-07,0.0212106,0.00174481,0.00177401,0.00258225,2.08559e-07,0.00078459,0.417077,0.000140293,0.176773,7.60385e-06,0.0013579,0.225269,0.0278887,0.103634,0.000869746,0.0361189,8.95356e-10,0.000200628,7.43561e-07,1.78989e-06,0.404461,4.53174e-05,3.71478e-05,1.17918e-06,2.42468e-07,0.000594519,3.80229e-10,4.26161e-08,2.25148e-06,1.8074e-10,3.4789e-08,0.129072,0.391133,0.413923,0.21467,0.010094,0.0310688,0.000541246,0.000880216,0.955472,0.767761,0.0217108,0.552835,0.00215694,1.26001e-06,0.114755,0.706607,0.680136,0.000223686,0.0124833,0.0051778,0.00147619,4.8615e-07,1.53425e-08,3.2284e-08,0.000174086,0.00135239,0.108023,0.000284603,0.0114613,0.0472952,2.37027e-05,1.39569e-05,0.776248,0.0103362,0.000984744,0.0773666,0.288519,5.78709e-05,2.90056e-05,0.000114135,0.922129,0.0182956,0.516373,0.00223921,0.0213082,0.00306526,0.797344,0.00232534,0.000312166,0.146544,0.327371,0.00716822,0.000408609,0.0200032,1.92548e-08,3.27788e-08,0.0784004,0.022382,0.548095,0.7859,0.0743196,0.0996084,0.135083,0.00144701,0.53886,4.96908e-06,0.0407053,0.743114,1.0184e-05,0.00061329,1.52582e-07,0.00260787,0.00100017,3.81931e-05,0.436135,0.394301,0.105105,0.156087,0.0185383,1.27122e-07,0.218284,0.00233785,0.0247233,1.93639e-07,0.236712,0.00616449,0.729521,6.33233e-07,0.205082,0.232411,0.000131182,0.144204,0.00118791,0.0689402,0.00280403,5.15144e-06,0.00226985,0.379121,1.81011e-06,0.0023528,0.019889,0.000103543,0.0350836,4.41512e-05,0.0284918,0.87009,0.187867,0.0188385,0.000442835,0.46674,0.000670104,0.00439808,0.187995,0.397192,0.664126,0.409171,0.349052,3.79186e-05,0.0422198,0.61843,0.822804,0.114796,0.845091,0.44133,1.62848e-07,0.0981217,0.0684513,0.404829,0.159357,0.206319,0.834834,0.0463444,0.36074,9.36853e-05,0.040648,0.224194,0.183119,0.433683,0.119042,0.45528,0.834016,0.0994346,0.0323358,0.000122427,0.0422094,0.00153358,0.728088,0.619923,0.0830583,0.0197883,0.0409279,0.000154623,0.922303,0.180698,0.327476,0.519744,0.227151,0.00993707,0.00812269,0.513093,0.714562,0.257933,0.0556121,0.000909862,0.00119014,3.09433e-06,0.0138808,0.0103833,0.0444566,0.878131,0.104841,0.0161781,0.212883,0.0185893,0.212018,0.698374,0.315717,8.4982e-06,0.879314,0.0166622,0.0513931,0.351723,0.000244675,0.0122175,0.00516657,0.517872,0.400005,0.0529019,0.0271107,0.243241,0.0793948,0.140071,0.0655415,0.204325,0.00786879,0.0278697,0.190357,0.0804233,0.862305,0.776306,0.00750663,0.113284,0.0709287,0.00487189,0.0472846,0.00153903,0.677709,0.137566,0.287192,0.557455,0.0599098,0.52216,0.561777,0.0875742,0.466401,0.236851,0.612451,0.0821658,0.269151,0.185391,0.0642905,0.533372,0.0826351,0.560426,0.805342,0.80914,0.0162742,0.717464,0.342518,0.460201,0.294456,0.342933,0.425974,0.701807,0.147528,0.35829,0.766397,0.248107,0.879895,0.200967,0.719302,0.513296,0.496593,0.0190955,0.0633903,0.00648482,0.00189169,0.0289932,0.00816307,0.329535,1.16901e-06,0.584557,0.00357376,0.0666383,0.902585,0.290906,0.730137,0.0607967,0.261888,3.22184e-05,9.79836e-06,0.772478,0.0513873,0.127818,0.000187329,0.392438,0.00676728,0.0207123,0.189674,0.0206671,0.000716173,0.0039884,0.163759,0.042845,0.116882,0.0209817,0.834907,0.000563598,0.00890212,0.000148993,0.551229,0.807404,0.548227,0.024979,0.0428983,0.000118606,0.741375,0.519177,0.134396,0.000322654,0.283571,0.820411,0.459228,0.617443,0.0116039,0.000892614 | |tfbs_overrepresentation=0.029654,0.00560851,8.74432e-07,0.226179,0.0240204,0.287187,0.00145729,0.000229007,0.456595,0.379626,0.297576,0.192911,0.000640827,0.706192,0.0790629,0.0313481,0.0238465,0.124446,0.262581,0.0203027,0.736287,0.0174113,0.0744787,0.113245,0.540883,0.162531,0.0319936,0.254319,0.776496,0.536283,0.247645,0.000108488,0.283654,0.00467189,0.134248,0.000280393,0.242552,0.552991,0.904719,0.000344534,0.285505,0.0774149,0.522381,0.00510454,0.420523,0.147771,0.508634,0.165941,0.0231855,0.42208,0.0370288,0.272044,0.385076,0.534023,0.22482,0.162149,0.158364,0.277486,0.189971,0.151174,0.421693,0.569363,0.352441,0.178241,0.642552,0.245786,0.541729,0.678434,0.49109,0.964953,0.262759,0.139389,0.0946336,0.676177,0.128532,0.271336,0.844377,0.559169,0.0336509,0.124926,0.115679,0.508771,0.046879,0.187883,0.0281152,0.168748,0.124713,0.263194,1.89408e-06,0.695181,0.0849568,0.00272507,0.548312,0.223774,0.486734,0.0268778,0.014249,0.0898786,0.532515,0.00114163,0.024678,0.381911,0.00821361,0.49966,0.302837,0.535198,0.136307,0.0049877,0.320365,0.000932812,0.00156064,0.469599,0.0809094,0.279014,0.858647,0.467131,0.313891,0.0934714,0.0222126,0.00613485,0.122416,0.0810257,0.522815,0.0850314,0.050859,0.69179,0.254138,0.239088,0.00632304,0.495877,0.0277158,0.0153052,0.660463,0.344645,0.447097,0.349658,0.707562,0.0885012,0.127185,0.0700801,0.34452,0.0142643,0.00393708,0.377248,0.000124368,7.0263e-05,0.126608,0.800731,0.165667,0.0333727,0.0576836,0.540883,0.303955,0.389775,0.550764,0.029581,0.759378,0.00974595,0.0754356,0.466854,0.0232747,0.840509,0.195346,0.337509,0.00733087,0.0752167,0.173011,0.241948,0.175191,0.0234561,0.491418,0.139582,0.179192,0.0039815,0.451275,0.00868121,0.00227847,0.501441,0.15638,0.143807,0.0428943,0.908847,0.0930862,0.190893,0.167479,0.409154,0.00159243,0.528463,0.0768873,0.141711,0.614627,0.18476,0.43156,0.0537388,0.37502,0.586864,0.189616,0.000184601,0.367565,0.16701,0.51139,0.680866,0.436816,0.682145,0.00647709,0.106125,0.0171146,0.0858922,0.00147342,5.96401e-06,0.57717,0.146608,0.0108343,0.00739669,0.000102882,0.128855,0.235303,0.310014,0.118975,0.321326,0.153302,0.00315756,0.0394009,0.22276,0.168127,0.708961,0.143197,0.229138,0.0290528,0.106184,0.000153703,0.000384522,0.185319,0.428396,0.116658,0.535227,0.588088,0.487614,0.413704,0.64634,0.0135657,0.171357,0.565974,0.00129112,0.193845,0.136765,0.0214799,3.11706e-06,0.00700011,0.00246776,0.000467329,0.0866553,0.32577,0.0433943,0.564185,0.617872,0.0601326,0.0100531,0.381039,0.00413638,0.114478,0.0278751,0.000157443,0.0428988,0.474771,0.203793,0.459383,0.104045,0.404919,0.421739,0.0418272,0.336903,0.296964,0.0849512,0.232378,0.508907,0.0158321,0.00816441,0.000218202,1.00793e-06,0.00860635,3.85617e-06,3.71926e-08,1.11968e-06,1.9284e-09,0.0496244,0.651565,0.000159543,0.357188,0.0217011,0.00860697,0.0378023,0.322686,0.00155032,0.000653644,0.00418606,0.00696523,0.00574185,0.000154471,0.000646608,2.62169e-05,1.96476e-16,0.526742,6.30627e-06,0.034165,0.000141463,0.0657769,3.00409e-05,0.299787,0.00202398,0.000681909,0.00343173,4.17717e-06,0.000499519,7.18391e-05,1.05415e-06,0.0239224,6.8447e-05,0.17377,0.000156408,0.000176979,5.78746e-08,0.0975725,0.020506,0.100241,0.00478059,0.573039,3.26021e-07,0.000938391,0.0130989,0.00845602,4.04472e-09,0.00641616,0.00587618,0.000112954,1.79922e-05,0.357903,0.000464142,0.000109295,0.713097,8.61976e-07,1.09364e-06,0.000810377,0.840075,1.20097e-06,0.725448,6.58728e-05,0.00979263,0.00268058,0.000124513,4.71607e-06,5.10802e-05,0.0359142,0.00299755,0.264705,0.00108736,0.231494,0.000355617,0.0527765,0.0147149,5.1143e-08,0.086841,0.130969,0.00265507,0.000315488,5.58461e-07,3.8818e-08,0.647999,0.0176268,0.000104046,6.65572e-08,0.207904,0.172429,0.110286,0.000210965,0.0162919,1.70559e-06,0.00256709,0.00107053,4.24728e-08,0.435134,2.45898e-05,1.83247e-05,0.0194871,2.30356e-06,0.0332069,1.03763e-05,0.0001138,0.00303955,0.000101374,1.59395e-08,0.00742361,0.000340582,2.28057e-06,5.70933e-07,0.0426335,0.335605,0.00929336,0.00957812,0.0206675,1.46624e-06,0.0041075,0.0223708,0.00343956,0.087739,0.0586962,0.0569987,0.105756,0.000103674,0.0133064,7.38441e-08,0.0299272,0.00064764,5.7942e-05,0.00919812,1.76348e-07,2.74684e-08,0.0629717,0.00342047,0.0234545,0.0122255,0.00198221,1.34006e-07,0.253151,0.00140111,0.000150912,0.119379,7.4073e-07,0.000463846,0.0130044,1.02734e-06,7.86556e-08,0.00092887,0.0237014,1.21732e-05,0.403158,0.000165027,0.0198178,0.000762528,3.53801e-11,0.0136462,0.0283274,0.215574,0.0428188,0.00825467,0.00108868,0.0227034,0.0445374,0.000190168,4.56585e-08,7.84384e-05,0.001206,5.65583e-05,0.00336272,0.288764,0.01236,0.148892,0.650198,0.902452,0.438423,0.0247929,0.00910703,0.0468442,0.786426,0.281585,0.0768464,0.0023647,0.0237979,0.435694,0.55785,0.000531618,0.23796,2.25807e-05,0.00547122,1.261e-05,0.333366,0.0184872,0.282033,0.0187278,0.00902464,0.799875,0.217518,0.130378,0.186799,0.600642,0.0314351,0.232938,0.0441814,0.157038,0.00159044,0.0689725,0.0368041,0.250009,0.628241,0.206577,0.0140553,0.60934,0.470683,0.360882,0.168085,0.0685324,0.000872342,0.0199081,0.369244,0.263904,0.0940742,0.229449,0.120293,0.00937537,0.00028253,0.0284837,0.721083,0.129347,0.813924,0.00285194,0.187407,0.676307,0.00138242,0.00777519,0.0846562,0.142141,0.305605,0.00060409,0.428635,0.260923,0.20384,0.62694,0.986367,0.000333809,0.450332,0.560297,0.39742,0.098041,0.519709,0.0045345,0.00988063,0.467464,0.287736,0.236344,0.7123,0.273718,0.0922735,0.452704,0.177467,0.109532,7.85198e-09,0.000710116,0.438246,0.286339,0.0448855,0.00431685,0.0009279,0.0964441,0.446626,0.122959,0.2345,0.00348259,0.474544,0.127393,0.102265,2.27967e-05,0.169215,0.676157,0.776464,0.0353888,0.353942,0.881977,0.197476,0.412585,0.0424234,0.0707139,0.165037,0.813208,0.021385,0.542847,0.90289,0.000244129,0.53958,3.28355e-06,0.00133669,1.25477e-06,0.284181,0.179102,0.00939595,0.207928,0.0816996,0.000107151,0.173105,0.151749,0.123928,0.525372,0.509258,0.244206,0.0113775,0.58869,0.000619262,0.0279476,0.735318,0.434672,0.0641146,0.71737,0.477488,0.000193686,2.89352e-05,0.62314,0.045673,0.242579,0.114092,0.421708,0.0366055,0.160536,0.133408,0.412669,0.0405364,0.00465055,6.70955e-05,0.295545,0.00079248,0.902439,0.102439,0.292198,0.487893,0.296233,0.590962,3.9498e-08,0.683792,0.000314681,0.00760183,0.156098,0.000344719,0.299367,0.48534,0.103643,0.684465,0.000144083,0.0821935,0.417841,0.65984,0.350639,0.137912,0.0208973,0.0677039,0.551074,2.31369e-06,0.422172,0.575438,0.169153,0.385843,0.104038,0.193975,0.505581,0.265832,0.207176,0.0832818,0.383729,0.0355922,0.0629766,0.332166,0.0945156,0.660143,0.122568,0.424895,0.0513546,0.805397,0.00781172,0.0877882,0.31368,0.305653,0.0639109,0.00237228,0.0853348,0.332531,0.350358,0.000253252,0.0394175,0.000389027,0.745325,0.527382,0.315227,0.320782,0.0117564,0.84716,0.00136306,0.132324,0.105133,0.752408,0.201913,0.00852573,0.100657,0.00985371,0.0796832,0.321873,0.00198501,0.374909,0.523911,0.0669843,0.54512,0.0288953,0.000374947,0.0630753,0.573886,0.0241521,0.0167978,0.0248992,0.377877,0.125686,0.0323833,0.00248428,0.964886,0.189301,0.0729179,0.0375835,0.039646,0.00195623,0.00862703,0.00578254,0.595362,0.0012776,0.659986,0.0106732,0.489714,4.27579e-05,0.490228,0.0403308,0.000349945,0.00152661,0.73826,0.295082,0.46993,5.15387e-07,0.257861,0.000498053,1.27358e-06,0.0735213,0.00641582,0.0554381,0.000419704,5.85505e-08,0.00333406,0.0104548,0.00937681,0.385693,2.91088e-07,1.41419e-06,0.010237,1.40999e-09,0.043882,7.24027e-07,0.0357575,0.00168255,0.000180569,0.00175923,0.0213339,0.509611,1.12153e-05,2.36101e-07,0.0212106,0.00174481,0.00177401,0.00258225,2.08559e-07,0.00078459,0.417077,0.000140293,0.176773,7.60385e-06,0.0013579,0.225269,0.0278887,0.103634,0.000869746,0.0361189,8.95356e-10,0.000200628,7.43561e-07,1.78989e-06,0.404461,4.53174e-05,3.71478e-05,1.17918e-06,2.42468e-07,0.000594519,3.80229e-10,4.26161e-08,2.25148e-06,1.8074e-10,3.4789e-08,0.129072,0.391133,0.413923,0.21467,0.010094,0.0310688,0.000541246,0.000880216,0.955472,0.767761,0.0217108,0.552835,0.00215694,1.26001e-06,0.114755,0.706607,0.680136,0.000223686,0.0124833,0.0051778,0.00147619,4.8615e-07,1.53425e-08,3.2284e-08,0.000174086,0.00135239,0.108023,0.000284603,0.0114613,0.0472952,2.37027e-05,1.39569e-05,0.776248,0.0103362,0.000984744,0.0773666,0.288519,5.78709e-05,2.90056e-05,0.000114135,0.922129,0.0182956,0.516373,0.00223921,0.0213082,0.00306526,0.797344,0.00232534,0.000312166,0.146544,0.327371,0.00716822,0.000408609,0.0200032,1.92548e-08,3.27788e-08,0.0784004,0.022382,0.548095,0.7859,0.0743196,0.0996084,0.135083,0.00144701,0.53886,4.96908e-06,0.0407053,0.743114,1.0184e-05,0.00061329,1.52582e-07,0.00260787,0.00100017,3.81931e-05,0.436135,0.394301,0.105105,0.156087,0.0185383,1.27122e-07,0.218284,0.00233785,0.0247233,1.93639e-07,0.236712,0.00616449,0.729521,6.33233e-07,0.205082,0.232411,0.000131182,0.144204,0.00118791,0.0689402,0.00280403,5.15144e-06,0.00226985,0.379121,1.81011e-06,0.0023528,0.019889,0.000103543,0.0350836,4.41512e-05,0.0284918,0.87009,0.187867,0.0188385,0.000442835,0.46674,0.000670104,0.00439808,0.187995,0.397192,0.664126,0.409171,0.349052,3.79186e-05,0.0422198,0.61843,0.822804,0.114796,0.845091,0.44133,1.62848e-07,0.0981217,0.0684513,0.404829,0.159357,0.206319,0.834834,0.0463444,0.36074,9.36853e-05,0.040648,0.224194,0.183119,0.433683,0.119042,0.45528,0.834016,0.0994346,0.0323358,0.000122427,0.0422094,0.00153358,0.728088,0.619923,0.0830583,0.0197883,0.0409279,0.000154623,0.922303,0.180698,0.327476,0.519744,0.227151,0.00993707,0.00812269,0.513093,0.714562,0.257933,0.0556121,0.000909862,0.00119014,3.09433e-06,0.0138808,0.0103833,0.0444566,0.878131,0.104841,0.0161781,0.212883,0.0185893,0.212018,0.698374,0.315717,8.4982e-06,0.879314,0.0166622,0.0513931,0.351723,0.000244675,0.0122175,0.00516657,0.517872,0.400005,0.0529019,0.0271107,0.243241,0.0793948,0.140071,0.0655415,0.204325,0.00786879,0.0278697,0.190357,0.0804233,0.862305,0.776306,0.00750663,0.113284,0.0709287,0.00487189,0.0472846,0.00153903,0.677709,0.137566,0.287192,0.557455,0.0599098,0.52216,0.561777,0.0875742,0.466401,0.236851,0.612451,0.0821658,0.269151,0.185391,0.0642905,0.533372,0.0826351,0.560426,0.805342,0.80914,0.0162742,0.717464,0.342518,0.460201,0.294456,0.342933,0.425974,0.701807,0.147528,0.35829,0.766397,0.248107,0.879895,0.200967,0.719302,0.513296,0.496593,0.0190955,0.0633903,0.00648482,0.00189169,0.0289932,0.00816307,0.329535,1.16901e-06,0.584557,0.00357376,0.0666383,0.902585,0.290906,0.730137,0.0607967,0.261888,3.22184e-05,9.79836e-06,0.772478,0.0513873,0.127818,0.000187329,0.392438,0.00676728,0.0207123,0.189674,0.0206671,0.000716173,0.0039884,0.163759,0.042845,0.116882,0.0209817,0.834907,0.000563598,0.00890212,0.000148993,0.551229,0.807404,0.548227,0.024979,0.0428983,0.000118606,0.741375,0.519177,0.134396,0.000322654,0.283571,0.820411,0.459228,0.617443,0.0116039,0.000892614 | ||
|tfbs_overrepresentation_for_novel_motifs=0.641436,1.00482,0.614071,0.0286391,0.288284,0.117606,0.0485097,1.2478,0.965789,1.06202,0.730603,0.225715,0.857005,0.388625,0.153974,0.793197,0.44268,0.0354969,0.96014,1.28024,0.221656,1.14804,0.270562,0.065439,0.151674,0.249942,0.098036,0.267314,0.0714608,0.579742,0.400947,0.493855,0.350497,2.28612,1.04681,1.19374,0.534555,0.118486,0.163949,0.627436,0.355118,0.607583,1.15555,0.151828,2.30232,0.135037,0.410958,0.222597,0.337061,0.295754,0.0769513,0.194928,0.336934,0.211146,0.849409,0.0459034,0.166786,0.337763,1.17863,0.0364427,1.05403,0.415212,0.740226,0.405456,0.203332,0.360898,0.384112,0.698465,0.931266,0.554649,0.567018,0.582793,0.744574,0.315234,0.626476,2.31148,4.75551,0.383338,0.156762,0.293858,0.0505736,0.128752,0.202981,0.0825837,0.278052,0.0222385,0.545865,0.283323,0.0876995,0.789473,2.02572,0.259197,0.517846,0.00654066,1.28014,0.15363,1.19131,0.200157,2.75706,0.219659,1.16417,0.170985,0.196687,0.447691,0.704764,0.23137,0.137438,0.168683,0.305416,0.416275,0.0403846,0.194975,0.377268,0.472596,0.420206,2.4248,1.89789,0.398292,0.110994,1.64237,0.309142,0.0866663,0.115524,0.214327,0.511854,0.121103,1.0856,0.177257,0.340904,0.0302281,1.32612,0.668381,0.351843,0.462174,0.470054,0.366117,0.952146,0.26816,0.435151,1.22318,0.838185,0.405073,0.0470939,0.575033,0.348623,0.323873,0.328042,1.06901,1.24648,0.363835,0.497181,0.352274,0.259937,0.905413,0.729384,0.581253,0.276763,0.0184621,0.519767,0.120709,0.404104,0.247272,0.473568,0.257288,0.368944,0.445898,0.908643,0.0480994,0.320163 | |||
}} | }} |
Revision as of 13:54, 26 November 2012
Full id: C243_Chondrocyte_trachea_Synoviocyte_mesodermal_renal_Fibroblast_Ewing
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
No analysis results for this cluster
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data