FFCP PHASE1:Mm9::chr11:100576668..100576690,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=54|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:100576668..100576690,-|id=chr11:100576668..100576690,-|ontology_enrichment_celltype=CL:0000055!2.17e-09!50;CL:0000393!3.27e-09!39;CL:0000211!3.27e-09!39;CL:0000548!3.55e-09!115;CL:0000004!3.55e-09!115;CL:0000255!3.55e-09!115;CL:0000723!7.21e-09!91;CL:0000048!7.21e-09!91;CL:0000034!3.18e-08!97;CL:0002371!3.83e-08!118;CL:0000117!5.98e-08!23;CL:0000337!5.98e-08!23;CL:0000221!1.23e-07!44;CL:0000133!1.23e-07!44;CL:0002319!1.47e-07!43;CL:0000144!2.15e-07!121;CL:0000012!2.15e-07!121;CL:0000540!9.27e-07!33;CL:0000047!9.27e-07!33;CL:0000031!9.27e-07!33;CL:0000404!9.27e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.65e-09,23;CL:0000337,1.65e-09,23;CL:0000393,1.86e-09,39;CL:0000211,1.86e-09,39;CL:0002321,7.08e-09,70;CL:0000723,8.97e-09,91;CL:0000048,8.97e-09,91;CL:0000034,8.67e-08,97;CL:0002194,1.09e-07,4;CL:0000766,1.09e-07,4;CL:0000234,1.09e-07,4;CL:0000576,1.09e-07,4;CL:0000235,1.09e-07,4;CL:0000864,1.09e-07,4;CL:0002009,1.09e-07,4;CL:0000040,1.09e-07,4;CL:0000559,1.09e-07,4;CL:0002092,5.79e-07,3;CL:0002540,5.79e-07,3;CL:0000540,8.69e-07,33;CL:0000047,8.69e-07,33;CL:0000031,8.69e-07,33;CL:0000404,8.69e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.39e-12!75;UBERON:0001016!1.39e-12!75;UBERON:0001017!2.55e-12!73;UBERON:0005743!2.55e-12!73;UBERON:0002020!1.02e-10!34;UBERON:0001049!3.87e-10!52;UBERON:0005068!3.87e-10!52;UBERON:0006241!3.87e-10!52;UBERON:0007135!3.87e-10!52;UBERON:0000955!1.44e-09!50;UBERON:0006238!1.44e-09!50;UBERON:0002616!3.34e-09!49;UBERON:0002791!2.33e-08!29;UBERON:0003528!2.33e-08!29;UBERON:0001893!2.33e-08!29;UBERON:0004121!1.01e-07!102;UBERON:0000924!1.01e-07!102;UBERON:0006601!1.01e-07!102;UBERON:0002346!1.15e-07!71;UBERON:0003075!1.15e-07!71;UBERON:0007284!1.15e-07!71;UBERON:0002021!1.71e-07!10;UBERON:0000411!1.71e-07!10;UBERON:0001950!1.71e-07!10;UBERON:0003080!2.52e-07!40;UBERON:0002780!3.18e-07!39;UBERON:0001890!3.18e-07!39;UBERON:0006240!3.18e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.16e-16,10;UBERON:0000411,1.16e-16,10;UBERON:0001950,1.16e-16,10;UBERON:0002020,4.38e-14,34;UBERON:0000073,8.20e-14,54;UBERON:0001017,1.17e-12,73;UBERON:0001016,4.05e-12,75;UBERON:0001049,1.27e-10,52;UBERON:0005068,1.27e-10,52;UBERON:0006241,1.27e-10,52;UBERON:0007135,1.27e-10,52;UBERON:0003528,2.46e-10,29;UBERON:0002791,2.46e-10,29;UBERON:0001893,2.46e-10,29;UBERON:0002780,6.12e-09,39;UBERON:0001890,6.12e-09,39;UBERON:0006240,6.12e-09,39;UBERON:0002619,7.99e-09,17;UBERON:0003080,1.31e-08,40;UBERON:0000956,4.31e-08,21;UBERON:0001869,4.31e-08,21;UBERON:0000203,4.31e-08,21;UBERON:0004121,5.05e-08,95;UBERON:0000924,5.05e-08,95;UBERON:0006601,5.05e-08,95;UBERON:0002616,6.97e-08,46;UBERON:0000955,1.27e-07,47;UBERON:0006238,1.27e-07,47;UBERON:0002346,1.36e-07,64;UBERON:0003075,1.36e-07,64;UBERON:0007284,1.36e-07,64|phase1_expression=0,0,0,0,0.500895729946347,0,0,0.645616617207881,0.281577444303333,0.234064526321993,0.513653904676515,0.159544317990673,0,0.699363219351979,0,0.202475267389826,0.699561878128147,0.315462165358238,0.274228867211478,0.42438965179803,0.850432901510698,1.39007331681239,0.522399578277871,0.319984845586813,0,1.14846392823004,0,0.430942465371778,0.190023419456374,0.252030129759931,0.221730510655305,0.635030673459631,0.61506478758457,0,0,0.664938581433969,0,0,0,0,0,0,0,0.881277725829041,0.811015449756117,1.10128051297009,0.782391344348039,0.436050312760893,0,0.388859798148567,0.839918529752175,0,0,0,0,1.02903774414379,2.0057340795713,2.57836046138721,0,1.05798195854407,0.633831403506179,0.338844532069132,0.889294796111139,4.94944844504769,9.88866362566974,4.2628806896766,1.79760066311043,3.07374644257244,0.518448061542388,1.35005938331691,0.420649922702764,1.42825492201902,1.32521124570968,0,0.766763768145891,0.919218786610021,3.30347642998166,1.27687338085188,1.53606533256243,0.395658863190582,0.914876436024097,1.04182674111352,3.07101298901519,2.8138130501584,1.68078072554491,2.06240009831567,1.70846016958924,0.745597783301202,0.37863096666592,0.529000920747499,0,0,0,2.69851595818909,0,1.34408066129201,0.280888840263504,0.852151612890289,0.519572009205738,2.47337702157238,0.422530259330042,0,0,0,2.38140145112336,1.77351905832569,1.51657333504435,1.02765491747154,0.258937883647172,0,0.346970653532272,1.21786191324856,0.691846491768175,0.150722640552623,0.352766121407114,0,0.494389935468748,0.722996784599558,0,0.161766849947409,0.220841518460394,0.969750506270444,0,1.17112318804619,0.209446706813455,0,0.11981512450592,0,0.254140454146129,0.449371918214468,0.915001205637253,0.376963056338593,0.347648640384553,0,0.20778804455956,0,0.101839363850316,0,0,0.210441855886474,0,0.229902104433473,0.360124259610698,0.30140963567143,0.0680364991513279,0.12811372028485,0.0937017245597288,0,0.215567992932842,0.567318240503458,0.351902248327898,0,0.278047249225598,0.348252166522167,0.2057821364079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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=54 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:100576668..100576690,- | |||
|id=chr11:100576668..100576690,- | |||
|ontology_enrichment_celltype=CL:0000055!2.17e-09!50;CL:0000393!3.27e-09!39;CL:0000211!3.27e-09!39;CL:0000548!3.55e-09!115;CL:0000004!3.55e-09!115;CL:0000255!3.55e-09!115;CL:0000723!7.21e-09!91;CL:0000048!7.21e-09!91;CL:0000034!3.18e-08!97;CL:0002371!3.83e-08!118;CL:0000117!5.98e-08!23;CL:0000337!5.98e-08!23;CL:0000221!1.23e-07!44;CL:0000133!1.23e-07!44;CL:0002319!1.47e-07!43;CL:0000144!2.15e-07!121;CL:0000012!2.15e-07!121;CL:0000540!9.27e-07!33;CL:0000047!9.27e-07!33;CL:0000031!9.27e-07!33;CL:0000404!9.27e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.65e-09,23;CL:0000337,1.65e-09,23;CL:0000393,1.86e-09,39;CL:0000211,1.86e-09,39;CL:0002321,7.08e-09,70;CL:0000723,8.97e-09,91;CL:0000048,8.97e-09,91;CL:0000034,8.67e-08,97;CL:0002194,1.09e-07,4;CL:0000766,1.09e-07,4;CL:0000234,1.09e-07,4;CL:0000576,1.09e-07,4;CL:0000235,1.09e-07,4;CL:0000864,1.09e-07,4;CL:0002009,1.09e-07,4;CL:0000040,1.09e-07,4;CL:0000559,1.09e-07,4;CL:0002092,5.79e-07,3;CL:0002540,5.79e-07,3;CL:0000540,8.69e-07,33;CL:0000047,8.69e-07,33;CL:0000031,8.69e-07,33;CL:0000404,8.69e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.39e-12!75;UBERON:0001016!1.39e-12!75;UBERON:0001017!2.55e-12!73;UBERON:0005743!2.55e-12!73;UBERON:0002020!1.02e-10!34;UBERON:0001049!3.87e-10!52;UBERON:0005068!3.87e-10!52;UBERON:0006241!3.87e-10!52;UBERON:0007135!3.87e-10!52;UBERON:0000955!1.44e-09!50;UBERON:0006238!1.44e-09!50;UBERON:0002616!3.34e-09!49;UBERON:0002791!2.33e-08!29;UBERON:0003528!2.33e-08!29;UBERON:0001893!2.33e-08!29;UBERON:0004121!1.01e-07!102;UBERON:0000924!1.01e-07!102;UBERON:0006601!1.01e-07!102;UBERON:0002346!1.15e-07!71;UBERON:0003075!1.15e-07!71;UBERON:0007284!1.15e-07!71;UBERON:0002021!1.71e-07!10;UBERON:0000411!1.71e-07!10;UBERON:0001950!1.71e-07!10;UBERON:0003080!2.52e-07!40;UBERON:0002780!3.18e-07!39;UBERON:0001890!3.18e-07!39;UBERON:0006240!3.18e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.16e-16,10;UBERON:0000411,1.16e-16,10;UBERON:0001950,1.16e-16,10;UBERON:0002020,4.38e-14,34;UBERON:0000073,8.20e-14,54;UBERON:0001017,1.17e-12,73;UBERON:0001016,4.05e-12,75;UBERON:0001049,1.27e-10,52;UBERON:0005068,1.27e-10,52;UBERON:0006241,1.27e-10,52;UBERON:0007135,1.27e-10,52;UBERON:0003528,2.46e-10,29;UBERON:0002791,2.46e-10,29;UBERON:0001893,2.46e-10,29;UBERON:0002780,6.12e-09,39;UBERON:0001890,6.12e-09,39;UBERON:0006240,6.12e-09,39;UBERON:0002619,7.99e-09,17;UBERON:0003080,1.31e-08,40;UBERON:0000956,4.31e-08,21;UBERON:0001869,4.31e-08,21;UBERON:0000203,4.31e-08,21;UBERON:0004121,5.05e-08,95;UBERON:0000924,5.05e-08,95;UBERON:0006601,5.05e-08,95;UBERON:0002616,6.97e-08,46;UBERON:0000955,1.27e-07,47;UBERON:0006238,1.27e-07,47;UBERON:0002346,1.36e-07,64;UBERON:0003075,1.36e-07,64;UBERON:0007284,1.36e-07,64 | |||
|phase1_expression=0,0,0,0,0.500895729946347,0,0,0.645616617207881,0.281577444303333,0.234064526321993,0.513653904676515,0.159544317990673,0,0.699363219351979,0,0.202475267389826,0.699561878128147,0.315462165358238,0.274228867211478,0.42438965179803,0.850432901510698,1.39007331681239,0.522399578277871,0.319984845586813,0,1.14846392823004,0,0.430942465371778,0.190023419456374,0.252030129759931,0.221730510655305,0.635030673459631,0.61506478758457,0,0,0.664938581433969,0,0,0,0,0,0,0,0.881277725829041,0.811015449756117,1.10128051297009,0.782391344348039,0.436050312760893,0,0.388859798148567,0.839918529752175,0,0,0,0,1.02903774414379,2.0057340795713,2.57836046138721,0,1.05798195854407,0.633831403506179,0.338844532069132,0.889294796111139,4.94944844504769,9.88866362566974,4.2628806896766,1.79760066311043,3.07374644257244,0.518448061542388,1.35005938331691,0.420649922702764,1.42825492201902,1.32521124570968,0,0.766763768145891,0.919218786610021,3.30347642998166,1.27687338085188,1.53606533256243,0.395658863190582,0.914876436024097,1.04182674111352,3.07101298901519,2.8138130501584,1.68078072554491,2.06240009831567,1.70846016958924,0.745597783301202,0.37863096666592,0.529000920747499,0,0,0,2.69851595818909,0,1.34408066129201,0.280888840263504,0.852151612890289,0.519572009205738,2.47337702157238,0.422530259330042,0,0,0,2.38140145112336,1.77351905832569,1.51657333504435,1.02765491747154,0.258937883647172,0,0.346970653532272,1.21786191324856,0.691846491768175,0.150722640552623,0.352766121407114,0,0.494389935468748,0.722996784599558,0,0.161766849947409,0.220841518460394,0.969750506270444,0,1.17112318804619,0.209446706813455,0,0.11981512450592,0,0.254140454146129,0.449371918214468,0.915001205637253,0.376963056338593,0.347648640384553,0,0.20778804455956,0,0.101839363850316,0,0,0.210441855886474,0,0.229902104433473,0.360124259610698,0.30140963567143,0.0680364991513279,0.12811372028485,0.0937017245597288,0,0.215567992932842,0.567318240503458,0.351902248327898,0,0.278047249225598,0.348252166522167,0.205782136407943,0.398068533636986,0.702213187313235,0.257347907114715,0.568326998791185,0.207125772535502,0,0.180062061461015,0.473489471170421,0.196764231747404,0,0.465067889500816,0,0.467061369468678,0,0.164167464079095,0.0810688095458557,0,0,0,0.420579897128254,0,1.65209391491899,0.264450566663544,0.213288250535234,1.16118335930219,0.38660238396628,0,0.889512175379481,0.951128130562796,0,0.988193728344065,1.00534083520108,0,0,0,0,0.398282546508734,0.379335801906163,0.228497025219458,1.1270773567308,0.610953983535943,0,0.0701358198903186,0.126473074248515,0,0.31399745568275,0.246794327843601,0,0.333690211432188,0,0.224862112384854,0,0,0.50925170356284,0.575392274901621,0,0,0,0,0,0.252578877947112,0,0,0,0.568474235311454,0.325929952884052,0.509235257325564,0,0.335012514883631,0,0,0,0,0.159454768657487,0.327726629431476,0.345369963731791,0.144649058581512,1.50791283939272,2.71952841909355,0,0,0.481651769963376,0.117211686592203,0,0,0.94652465824877,0,0.430846795465598,0.477937595905104,0.668396022247182,0,0.809621403349789,1.46127928955656,0,0.963963949265421,0.141940085208269,0,0,0,0,0.485561272309963,0,0,0,0.307435147943927,0,0,0.356497378384721,0,0,0,0,0.540183282093931,0,0.643011105094777,0.177340233642274,1.07021290561242,2.13913726782757,0.304464949114599,0.23467170806371,0.42366414172764,0.220528398054962,0.32977250588296,0,0,0.119372344003136,0,0,0.556275906031529,0,0,0.925972636848558,0,0,0.457556346413045,0,0,0.138199973804424,40.0961659566348,0.158167996790568,0,0.540026704109006,0.209088296014469,0,0,0,0.26175594198403,0.129614973291793,0,0.56369293868419,0.149516546043979,0.165458490457098,0.194451188344048,0,0,0.469428954583016,0.2604087696879,0,0,0,0,1.01362607645082,0.410843828659309,0.51968329191118,0.358053391334963,0,0.120195449519969,0,0,0.228620419965,0.100826185136841,0,0,0.116876902181569,0,0.665957860122194,0.269141569828427,0.335769232728157,0.19318959403219,0,0,0,0,6.21227026878773,1.38097570952153,3.43737308063638,8.248952752497,1.37016503954128,1.5107877947794,2.02506750069542,1.80128481289688,1.35942722695261,3.10656187051092,0.31136204275253,0,0,0,0.628839487883947,0.367687016900028,0,0.412070114477788,0.320919209591815,0.252697211763798,0.50695859978048,0.377252682772152,0.561849044819294,0.448176066834085,0.34461281373368,0.476293691283074,0.695305955669133,0.578727661391115,0.412085900803307,0.147198920134397,1.37147700954166,0.532427418478012,0.476872379894642,0.436039249896986,0.564656282491984,0.507687647350059,0,0.789209134313529,0.135804113845862,0,0.237270036248348,0.689531376628944,0.818462086339379,0,0,0,0.233931608445408,0,0,0,0.231867835620421 | |||
|short_description=p@chr11:100576668..100576690,- | |||
}} |
Revision as of 18:11, 12 September 2013
Short description: | p@chr11:100576668..100576690, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:100576668..100576690, - |
Coexpression cluster: | MCL_coexpression_mm9:54 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.65e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.65e-09 | 23 |
electrically responsive cell | 1.86e-09 | 39 |
electrically active cell | 1.86e-09 | 39 |
embryonic cell | 7.08e-09 | 70 |
somatic stem cell | 8.97e-09 | 91 |
multi fate stem cell | 8.97e-09 | 91 |
stem cell | 8.67e-08 | 97 |
monopoietic cell | 1.09e-07 | 4 |
myeloid leukocyte | 1.09e-07 | 4 |
phagocyte | 1.09e-07 | 4 |
monocyte | 1.09e-07 | 4 |
macrophage | 1.09e-07 | 4 |
tissue-resident macrophage | 1.09e-07 | 4 |
macrophage dendritic cell progenitor | 1.09e-07 | 4 |
monoblast | 1.09e-07 | 4 |
promonocyte | 1.09e-07 | 4 |
bone marrow cell | 5.79e-07 | 3 |
mesenchymal stem cell of the bone marrow | 5.79e-07 | 3 |
neuron | 8.69e-07 | 33 |
neuronal stem cell | 8.69e-07 | 33 |
neuroblast | 8.69e-07 | 33 |
electrically signaling cell | 8.69e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 1.16e-16 | 10 |
visual cortex | 1.16e-16 | 10 |
neocortex | 1.16e-16 | 10 |
gray matter | 4.38e-14 | 34 |
regional part of nervous system | 8.20e-14 | 54 |
central nervous system | 1.17e-12 | 73 |
nervous system | 4.05e-12 | 75 |
neural tube | 1.27e-10 | 52 |
neural rod | 1.27e-10 | 52 |
future spinal cord | 1.27e-10 | 52 |
neural keel | 1.27e-10 | 52 |
brain grey matter | 2.46e-10 | 29 |
regional part of telencephalon | 2.46e-10 | 29 |
telencephalon | 2.46e-10 | 29 |
regional part of forebrain | 6.12e-09 | 39 |
forebrain | 6.12e-09 | 39 |
future forebrain | 6.12e-09 | 39 |
regional part of cerebral cortex | 7.99e-09 | 17 |
anterior neural tube | 1.31e-08 | 40 |
cerebral cortex | 4.31e-08 | 21 |
cerebral hemisphere | 4.31e-08 | 21 |
pallium | 4.31e-08 | 21 |
ectoderm-derived structure | 5.05e-08 | 95 |
ectoderm | 5.05e-08 | 95 |
presumptive ectoderm | 5.05e-08 | 95 |
regional part of brain | 6.97e-08 | 46 |
brain | 1.27e-07 | 47 |
future brain | 1.27e-07 | 47 |
neurectoderm | 1.36e-07 | 64 |
neural plate | 1.36e-07 | 64 |
presumptive neural plate | 1.36e-07 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.