FFCP PHASE1:Mm9::chr14:64225328..64225364,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=219149|HGNC=|MCL_coexpression_id=367|UniProt=E9Q6C8|association_with_transcript=0bp_to_ENSMUST00000119973_5end|description=CAGE_peak_2_at_Xkr6_5end|id=chr14:64225328..64225364,+|ontology_enrichment_celltype=CL:0000540!3.82e-14!33;CL:0000047!3.82e-14!33;CL:0000031!3.82e-14!33;CL:0000404!3.82e-14!33;CL:0000117!3.60e-11!23;CL:0000337!3.60e-11!23;CL:0000393!1.11e-10!39;CL:0000211!1.11e-10!39;CL:0000221!7.24e-09!44;CL:0000133!7.24e-09!44;CL:0002319!1.94e-08!43|ontology_enrichment_celltype_v019_2=CL:0000540,2.13e-16,33;CL:0000047,2.13e-16,33;CL:0000031,2.13e-16,33;CL:0000404,2.13e-16,33;CL:0000117,6.87e-13,23;CL:0000337,6.87e-13,23;CL:0000393,1.26e-11,39;CL:0000211,1.26e-11,39;CL:0000221,8.60e-10,44;CL:0000133,8.60e-10,44;CL:0002319,2.69e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.35e-24!71;UBERON:0003075!1.35e-24!71;UBERON:0007284!1.35e-24!71;UBERON:0004121!3.51e-23!102;UBERON:0000924!3.51e-23!102;UBERON:0006601!3.51e-23!102;UBERON:0001017!2.56e-21!73;UBERON:0005743!2.56e-21!73;UBERON:0000073!1.70e-20!75;UBERON:0001016!1.70e-20!75;UBERON:0001049!5.29e-17!52;UBERON:0005068!5.29e-17!52;UBERON:0006241!5.29e-17!52;UBERON:0007135!5.29e-17!52;UBERON:0000033!8.95e-17!63;UBERON:0003056!1.02e-15!49;UBERON:0000955!1.72e-14!50;UBERON:0006238!1.72e-14!50;UBERON:0002616!2.72e-14!49;UBERON:0002020!1.07e-12!34;UBERON:0003080!1.17e-12!40;UBERON:0002780!4.11e-12!39;UBERON:0001890!4.11e-12!39;UBERON:0006240!4.11e-12!39;UBERON:0002791!1.40e-09!29;UBERON:0003528!1.40e-09!29;UBERON:0001893!1.40e-09!29;UBERON:0000468!2.15e-09!333;UBERON:0000153!2.68e-07!94;UBERON:0000025!6.09e-07!114;UBERON:0000922!7.02e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.49e-24,64;UBERON:0003075,2.49e-24,64;UBERON:0007284,2.49e-24,64;UBERON:0001017,7.42e-24,73;UBERON:0004121,1.31e-22,95;UBERON:0000924,1.31e-22,95;UBERON:0006601,1.31e-22,95;UBERON:0001016,1.86e-22,75;UBERON:0010371,4.98e-21,73;UBERON:0000073,1.48e-19,54;UBERON:0001049,6.16e-19,52;UBERON:0005068,6.16e-19,52;UBERON:0006241,6.16e-19,52;UBERON:0007135,6.16e-19,52;UBERON:0010314,1.91e-18,92;UBERON:0003056,3.21e-17,49;UBERON:0000955,6.19e-15,47;UBERON:0006238,6.19e-15,47;UBERON:0002616,1.06e-14,46;UBERON:0002020,4.47e-14,34;UBERON:0003080,1.21e-13,40;UBERON:0002780,5.12e-13,39;UBERON:0001890,5.12e-13,39;UBERON:0006240,5.12e-13,39;UBERON:0003528,1.86e-10,29;UBERON:0002791,1.86e-10,29;UBERON:0001893,1.86e-10,29;UBERON:0002420,9.86e-07,8;UBERON:0007245,9.86e-07,8;UBERON:0010009,9.86e-07,8;UBERON:0010011,9.86e-07,8;UBERON:0000454,9.86e-07,8|phase1_expression=2.7225304007815,0.348975407639361,0,0.30246421130683,0,0.839396359559449,0.233612640595526,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0.157731082679119,0,0,2.46625541438102,0,0,0.639969691173627,0.22940928106717,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.503587271902309,0.811015449756117,0.550640256485045,0,0.436050312760893,0.219686182734472,0.388859798148567,0.419959264876088,0,0,0,0,0.257259436035947,0,0.515672092277442,6.06949382578793,6.34789175126439,5.70448263155561,0,0,0,0,0,0.299600110518405,0.768436610643109,1.55534418462716,1.08004750665353,1.26194976810829,6.85562362569129,5.74258206474195,3.67472397644862,3.73797336971122,1.83843757322004,2.20231761998777,2.17068474744819,2.76491759861238,4.48413378282659,6.67859798297591,5.73004707612436,3.07101298901519,7.87867654044352,2.90316670775939,8.54422897873636,10.1083893367363,6.89677949553612,0.681535739998656,0.453429360640713,2.02905142091174,0.860423876981386,0,1.07940638327563,0,0.896053774194671,0.280888840263504,0.340860645156116,0.519572009205738,0.35333957451034,3.66192891419369,2.56652954828636,0,0,0,0,0,0.79928715803342,0.517875767294343,2.82040064223167,3.81667718885499,1.82679286987285,2.30615497256059,3.01445281105245,3.41007250693544,2.26199864393416,2.47194967734374,0.722996784599558,0,0.485300549842228,0,0,1.86391761218122,14.9318206475889,25.3430515244281,1.53274233125155,0,0,0,4.6435098215495,4.57500602818627,11.0575829859321,5.04090528557602,4.85859368927628,5.40248915854856,5.67844420737152,0.81471491080253,0.124406970610093,0.758168275301024,1.68353484709179,1.69156575851515,1.60931473103431,2.34080768746954,2.10986744970001,3.40182495756639,3.45907044769094,4.77878795254617,8.01980449290949,0.862271971731369,1.89106080167819,3.16712023495108,2.19195732427575,2.50242524303038,0.696504333044333,0.823128545631774,1.19420560091096,0,0,0,0.207125772535502,0.703578179943289,0.720248245844059,1.18372367792605,0.787056926989615,1.07986979021165,0.930135779001631,0.804820204198858,1.05088808130453,0.493679549740441,0.820837320395476,0.56748166682099,0.877199924551994,0,0.939444931322602,2.3131894342054,4.93942139420565,0.660837565967596,0.264450566663544,1.70630600428187,1.16118335930219,1.67527699718721,2.42020229548011,2.2237804384487,1.33157938278791,0.474529061544512,0.494096864172033,0.502670417600539,1.39269530428806,0.584892261357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| ||
|EntrezGene=219149 | |||
|HGNC= | |||
|MCL_coexpression_id=367 | |||
|UniProt=E9Q6C8 | |||
|association_with_transcript=0bp_to_ENSMUST00000119973_5end | |||
|description=CAGE_peak_2_at_Xkr6_5end | |||
|id=chr14:64225328..64225364,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.82e-14!33;CL:0000047!3.82e-14!33;CL:0000031!3.82e-14!33;CL:0000404!3.82e-14!33;CL:0000117!3.60e-11!23;CL:0000337!3.60e-11!23;CL:0000393!1.11e-10!39;CL:0000211!1.11e-10!39;CL:0000221!7.24e-09!44;CL:0000133!7.24e-09!44;CL:0002319!1.94e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.13e-16,33;CL:0000047,2.13e-16,33;CL:0000031,2.13e-16,33;CL:0000404,2.13e-16,33;CL:0000117,6.87e-13,23;CL:0000337,6.87e-13,23;CL:0000393,1.26e-11,39;CL:0000211,1.26e-11,39;CL:0000221,8.60e-10,44;CL:0000133,8.60e-10,44;CL:0002319,2.69e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.35e-24!71;UBERON:0003075!1.35e-24!71;UBERON:0007284!1.35e-24!71;UBERON:0004121!3.51e-23!102;UBERON:0000924!3.51e-23!102;UBERON:0006601!3.51e-23!102;UBERON:0001017!2.56e-21!73;UBERON:0005743!2.56e-21!73;UBERON:0000073!1.70e-20!75;UBERON:0001016!1.70e-20!75;UBERON:0001049!5.29e-17!52;UBERON:0005068!5.29e-17!52;UBERON:0006241!5.29e-17!52;UBERON:0007135!5.29e-17!52;UBERON:0000033!8.95e-17!63;UBERON:0003056!1.02e-15!49;UBERON:0000955!1.72e-14!50;UBERON:0006238!1.72e-14!50;UBERON:0002616!2.72e-14!49;UBERON:0002020!1.07e-12!34;UBERON:0003080!1.17e-12!40;UBERON:0002780!4.11e-12!39;UBERON:0001890!4.11e-12!39;UBERON:0006240!4.11e-12!39;UBERON:0002791!1.40e-09!29;UBERON:0003528!1.40e-09!29;UBERON:0001893!1.40e-09!29;UBERON:0000468!2.15e-09!333;UBERON:0000153!2.68e-07!94;UBERON:0000025!6.09e-07!114;UBERON:0000922!7.02e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.49e-24,64;UBERON:0003075,2.49e-24,64;UBERON:0007284,2.49e-24,64;UBERON:0001017,7.42e-24,73;UBERON:0004121,1.31e-22,95;UBERON:0000924,1.31e-22,95;UBERON:0006601,1.31e-22,95;UBERON:0001016,1.86e-22,75;UBERON:0010371,4.98e-21,73;UBERON:0000073,1.48e-19,54;UBERON:0001049,6.16e-19,52;UBERON:0005068,6.16e-19,52;UBERON:0006241,6.16e-19,52;UBERON:0007135,6.16e-19,52;UBERON:0010314,1.91e-18,92;UBERON:0003056,3.21e-17,49;UBERON:0000955,6.19e-15,47;UBERON:0006238,6.19e-15,47;UBERON:0002616,1.06e-14,46;UBERON:0002020,4.47e-14,34;UBERON:0003080,1.21e-13,40;UBERON:0002780,5.12e-13,39;UBERON:0001890,5.12e-13,39;UBERON:0006240,5.12e-13,39;UBERON:0003528,1.86e-10,29;UBERON:0002791,1.86e-10,29;UBERON:0001893,1.86e-10,29;UBERON:0002420,9.86e-07,8;UBERON:0007245,9.86e-07,8;UBERON:0010009,9.86e-07,8;UBERON:0010011,9.86e-07,8;UBERON:0000454,9.86e-07,8 | |||
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| |||
|short_description=p2@Xkr6 | |||
}} |
Revision as of 02:45, 13 September 2013
Short description: | p2@Xkr6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Xkr6_5end |
Coexpression cluster: | MCL_coexpression_mm9:367 |
Association with transcript: | 0bp_to_ENSMUST00000119973_5end |
EntrezGene: | Xkr6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.13e-16 | 33 |
neuronal stem cell | 2.13e-16 | 33 |
neuroblast | 2.13e-16 | 33 |
electrically signaling cell | 2.13e-16 | 33 |
CNS neuron (sensu Vertebrata) | 6.87e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.87e-13 | 23 |
electrically responsive cell | 1.26e-11 | 39 |
electrically active cell | 1.26e-11 | 39 |
ectodermal cell | 8.60e-10 | 44 |
neurectodermal cell | 8.60e-10 | 44 |
neural cell | 2.69e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.49e-24 | 64 |
neural plate | 2.49e-24 | 64 |
presumptive neural plate | 2.49e-24 | 64 |
central nervous system | 7.42e-24 | 73 |
ectoderm-derived structure | 1.31e-22 | 95 |
ectoderm | 1.31e-22 | 95 |
presumptive ectoderm | 1.31e-22 | 95 |
nervous system | 1.86e-22 | 75 |
ecto-epithelium | 4.98e-21 | 73 |
regional part of nervous system | 1.48e-19 | 54 |
neural tube | 6.16e-19 | 52 |
neural rod | 6.16e-19 | 52 |
future spinal cord | 6.16e-19 | 52 |
neural keel | 6.16e-19 | 52 |
structure with developmental contribution from neural crest | 1.91e-18 | 92 |
pre-chordal neural plate | 3.21e-17 | 49 |
brain | 6.19e-15 | 47 |
future brain | 6.19e-15 | 47 |
regional part of brain | 1.06e-14 | 46 |
gray matter | 4.47e-14 | 34 |
anterior neural tube | 1.21e-13 | 40 |
regional part of forebrain | 5.12e-13 | 39 |
forebrain | 5.12e-13 | 39 |
future forebrain | 5.12e-13 | 39 |
brain grey matter | 1.86e-10 | 29 |
regional part of telencephalon | 1.86e-10 | 29 |
telencephalon | 1.86e-10 | 29 |
basal ganglion | 9.86e-07 | 8 |
nuclear complex of neuraxis | 9.86e-07 | 8 |
aggregate regional part of brain | 9.86e-07 | 8 |
collection of basal ganglia | 9.86e-07 | 8 |
cerebral subcortex | 9.86e-07 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.