FFCP PHASE1:Mm9::chr15:100430414..100430470,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19009|HGNC=|MCL_coexpression_id=118|UniProt=Q5U4D4|association_with_transcript=0bp_to_ENSMUST00000073837,uc007xrr.1_5end|description=CAGE_peak_1_at_Pou6f1_5end|id=chr15:100430414..100430470,-|ontology_enrichment_celltype=CL:0000117!1.32e-09!23;CL:0000337!1.32e-09!23;CL:0000540!2.04e-09!33;CL:0000047!2.04e-09!33;CL:0000031!2.04e-09!33;CL:0000404!2.04e-09!33;CL:0002319!2.23e-08!43;CL:0000221!2.80e-08!44;CL:0000133!2.80e-08!44;CL:0000393!5.35e-08!39;CL:0000211!5.35e-08!39;CL:0000055!9.26e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,8.45e-10,23;CL:0000337,8.45e-10,23;CL:0000540,1.32e-09,33;CL:0000047,1.32e-09,33;CL:0000031,1.32e-09,33;CL:0000404,1.32e-09,33;CL:0002319,3.11e-08,43;CL:0000221,3.88e-08,44;CL:0000133,3.88e-08,44;CL:0000393,5.31e-08,39;CL:0000211,5.31e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.71e-22!73;UBERON:0005743!2.71e-22!73;UBERON:0007811!3.30e-21!86;UBERON:0000153!6.92e-21!94;UBERON:0000073!8.03e-21!75;UBERON:0001016!8.03e-21!75;UBERON:0001049!3.47e-19!52;UBERON:0005068!3.47e-19!52;UBERON:0006241!3.47e-19!52;UBERON:0007135!3.47e-19!52;UBERON:0000955!3.98e-17!50;UBERON:0006238!3.98e-17!50;UBERON:0000033!7.13e-17!63;UBERON:0002020!1.20e-16!34;UBERON:0002616!1.33e-16!49;UBERON:0002346!5.36e-16!71;UBERON:0003075!5.36e-16!71;UBERON:0007284!5.36e-16!71;UBERON:0004121!7.28e-16!102;UBERON:0000924!7.28e-16!102;UBERON:0006601!7.28e-16!102;UBERON:0003056!1.40e-15!49;UBERON:0003080!1.83e-15!40;UBERON:0002780!5.74e-15!39;UBERON:0001890!5.74e-15!39;UBERON:0006240!5.74e-15!39;UBERON:0002791!8.52e-15!29;UBERON:0003528!8.52e-15!29;UBERON:0001893!8.52e-15!29;UBERON:0000956!7.03e-12!21;UBERON:0001869!7.03e-12!21;UBERON:0000203!7.03e-12!21;UBERON:0002619!2.93e-09!17;UBERON:0000477!2.44e-08!154;UBERON:0000475!5.16e-08!200;UBERON:0002021!2.61e-07!10;UBERON:0000411!2.61e-07!10;UBERON:0001950!2.61e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.29e-22,73;UBERON:0001016,7.09e-21,75;UBERON:0002346,6.21e-20,64;UBERON:0003075,6.21e-20,64;UBERON:0007284,6.21e-20,64;UBERON:0001049,2.01e-19,52;UBERON:0005068,2.01e-19,52;UBERON:0006241,2.01e-19,52;UBERON:0007135,2.01e-19,52;UBERON:0000073,7.63e-19,54;UBERON:0004121,3.12e-18,95;UBERON:0000924,3.12e-18,95;UBERON:0006601,3.12e-18,95;UBERON:0010371,9.35e-18,73;UBERON:0000955,1.91e-17,47;UBERON:0006238,1.91e-17,47;UBERON:0002020,5.16e-17,34;UBERON:0002616,6.58e-17,46;UBERON:0003056,6.41e-16,49;UBERON:0003080,8.44e-16,40;UBERON:0002780,2.72e-15,39;UBERON:0001890,2.72e-15,39;UBERON:0006240,2.72e-15,39;UBERON:0003528,4.07e-15,29;UBERON:0002791,4.07e-15,29;UBERON:0001893,4.07e-15,29;UBERON:0000956,3.95e-12,21;UBERON:0001869,3.95e-12,21;UBERON:0000203,3.95e-12,21;UBERON:0010314,1.16e-10,92;UBERON:0002619,1.91e-09,17;UBERON:0002021,1.89e-07,10;UBERON:0000411,1.89e-07,10;UBERON:0001950,1.89e-07,10|phase1_expression=4.80446541314382,0,0.454999239389536,0,0,0.33575854382378,0,2.58246646883153,36.4642790372817,35.811872527265,1.36974374580404,1.99430397488341,2.73921167889929,2.62261207256992,0.666219523631325,0.404950534779652,0,2.36596624018678,2.19383093769182,4.2438965179803,4.5072943780067,0,0.522399578277871,0.319984845586813,0.22940928106717,0,0,0,0.380046838912748,0,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,2.39203954153597,2.63580021170738,3.12029478674859,0.782391344348039,6.97680500417429,1.97717564461025,1.94429899074283,1.25987779462826,5.75010257459886,5.03347818173209,10.1550699881588,9.07453257684653,1.02903774414379,0.85960031981627,1.03134418455488,11.9366711907163,8.46385566835253,13.9442908771359,0,2.66788438833342,1.3498495759221,0,1.4209602298922,5.39280198933128,6.53171119046643,22.8117147078651,21.3309382564071,17.4569717921647,9.42648248532552,3.53389665522582,17.3936934885235,20.1275489138296,17.4651569455904,1.10115880999389,4.72443150915195,3.37934373163736,10.8146755938759,10.6125666578795,7.8137005583514,2.79182999001381,3.37657566019008,4.43114918552749,5.89257170947335,5.69486723196412,8.20157561631323,0.530083353332288,0.755715601067855,4.34796733052517,0,0,0.539703191637817,1.29955283489534,0.448026887097336,1.96622188184453,1.1930122580464,1.55871602761721,0.70667914902068,2.11265129665021,5.13305909657271,0,0,0,0.760079596425296,0,1.59857431606684,3.10725460376606,1.7813056687779,0.693941307064543,0.608930956624282,0.461230994512117,0.60289056221049,1.64624189989987,1.75933227861546,0.988779870937496,4.33798070759735,0,3.07357014900077,1.54589062922275,0.969750506270444,0,11.4184510834503,5.23616767033638,1.02182822083437,0,0,0,9.13722900369418,18.7575247155637,16.2094114225595,27.9857155509565,23.2701066170601,6.64921742590592,8.27430441645564,4.3790926455636,3.11017426525233,9.09801930361229,4.41927897361595,1.56144531555244,1.37941262660084,1.80062129805349,2.56198190320716,4.76255494059295,4.61209393025459,4.12287588062807,4.39795730256327,1.72454394346274,3.02569728268511,3.16712023495108,1.97276159184817,0.834141747676794,2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| ||
|EntrezGene=19009 | |||
|HGNC= | |||
|MCL_coexpression_id=118 | |||
|UniProt=Q5U4D4 | |||
|association_with_transcript=0bp_to_ENSMUST00000073837,uc007xrr.1_5end | |||
|description=CAGE_peak_1_at_Pou6f1_5end | |||
|id=chr15:100430414..100430470,- | |||
|ontology_enrichment_celltype=CL:0000117!1.32e-09!23;CL:0000337!1.32e-09!23;CL:0000540!2.04e-09!33;CL:0000047!2.04e-09!33;CL:0000031!2.04e-09!33;CL:0000404!2.04e-09!33;CL:0002319!2.23e-08!43;CL:0000221!2.80e-08!44;CL:0000133!2.80e-08!44;CL:0000393!5.35e-08!39;CL:0000211!5.35e-08!39;CL:0000055!9.26e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.45e-10,23;CL:0000337,8.45e-10,23;CL:0000540,1.32e-09,33;CL:0000047,1.32e-09,33;CL:0000031,1.32e-09,33;CL:0000404,1.32e-09,33;CL:0002319,3.11e-08,43;CL:0000221,3.88e-08,44;CL:0000133,3.88e-08,44;CL:0000393,5.31e-08,39;CL:0000211,5.31e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.71e-22!73;UBERON:0005743!2.71e-22!73;UBERON:0007811!3.30e-21!86;UBERON:0000153!6.92e-21!94;UBERON:0000073!8.03e-21!75;UBERON:0001016!8.03e-21!75;UBERON:0001049!3.47e-19!52;UBERON:0005068!3.47e-19!52;UBERON:0006241!3.47e-19!52;UBERON:0007135!3.47e-19!52;UBERON:0000955!3.98e-17!50;UBERON:0006238!3.98e-17!50;UBERON:0000033!7.13e-17!63;UBERON:0002020!1.20e-16!34;UBERON:0002616!1.33e-16!49;UBERON:0002346!5.36e-16!71;UBERON:0003075!5.36e-16!71;UBERON:0007284!5.36e-16!71;UBERON:0004121!7.28e-16!102;UBERON:0000924!7.28e-16!102;UBERON:0006601!7.28e-16!102;UBERON:0003056!1.40e-15!49;UBERON:0003080!1.83e-15!40;UBERON:0002780!5.74e-15!39;UBERON:0001890!5.74e-15!39;UBERON:0006240!5.74e-15!39;UBERON:0002791!8.52e-15!29;UBERON:0003528!8.52e-15!29;UBERON:0001893!8.52e-15!29;UBERON:0000956!7.03e-12!21;UBERON:0001869!7.03e-12!21;UBERON:0000203!7.03e-12!21;UBERON:0002619!2.93e-09!17;UBERON:0000477!2.44e-08!154;UBERON:0000475!5.16e-08!200;UBERON:0002021!2.61e-07!10;UBERON:0000411!2.61e-07!10;UBERON:0001950!2.61e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.29e-22,73;UBERON:0001016,7.09e-21,75;UBERON:0002346,6.21e-20,64;UBERON:0003075,6.21e-20,64;UBERON:0007284,6.21e-20,64;UBERON:0001049,2.01e-19,52;UBERON:0005068,2.01e-19,52;UBERON:0006241,2.01e-19,52;UBERON:0007135,2.01e-19,52;UBERON:0000073,7.63e-19,54;UBERON:0004121,3.12e-18,95;UBERON:0000924,3.12e-18,95;UBERON:0006601,3.12e-18,95;UBERON:0010371,9.35e-18,73;UBERON:0000955,1.91e-17,47;UBERON:0006238,1.91e-17,47;UBERON:0002020,5.16e-17,34;UBERON:0002616,6.58e-17,46;UBERON:0003056,6.41e-16,49;UBERON:0003080,8.44e-16,40;UBERON:0002780,2.72e-15,39;UBERON:0001890,2.72e-15,39;UBERON:0006240,2.72e-15,39;UBERON:0003528,4.07e-15,29;UBERON:0002791,4.07e-15,29;UBERON:0001893,4.07e-15,29;UBERON:0000956,3.95e-12,21;UBERON:0001869,3.95e-12,21;UBERON:0000203,3.95e-12,21;UBERON:0010314,1.16e-10,92;UBERON:0002619,1.91e-09,17;UBERON:0002021,1.89e-07,10;UBERON:0000411,1.89e-07,10;UBERON:0001950,1.89e-07,10 | |||
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| |||
|short_description=p1@Pou6f1 | |||
}} |
Revision as of 03:18, 13 September 2013
Short description: | p1@Pou6f1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pou6f1_5end |
Coexpression cluster: | MCL_coexpression_mm9:118 |
Association with transcript: | 0bp_to_ENSMUST00000073837, uc007xrr.1_5end |
EntrezGene: | Pou6f1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.45e-10 | 23 |
neuroblast (sensu Vertebrata) | 8.45e-10 | 23 |
neuron | 1.32e-09 | 33 |
neuronal stem cell | 1.32e-09 | 33 |
neuroblast | 1.32e-09 | 33 |
electrically signaling cell | 1.32e-09 | 33 |
neural cell | 3.11e-08 | 43 |
ectodermal cell | 3.88e-08 | 44 |
neurectodermal cell | 3.88e-08 | 44 |
electrically responsive cell | 5.31e-08 | 39 |
electrically active cell | 5.31e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.29e-22 | 73 |
nervous system | 7.09e-21 | 75 |
neurectoderm | 6.21e-20 | 64 |
neural plate | 6.21e-20 | 64 |
presumptive neural plate | 6.21e-20 | 64 |
neural tube | 2.01e-19 | 52 |
neural rod | 2.01e-19 | 52 |
future spinal cord | 2.01e-19 | 52 |
neural keel | 2.01e-19 | 52 |
regional part of nervous system | 7.63e-19 | 54 |
ectoderm-derived structure | 3.12e-18 | 95 |
ectoderm | 3.12e-18 | 95 |
presumptive ectoderm | 3.12e-18 | 95 |
ecto-epithelium | 9.35e-18 | 73 |
brain | 1.91e-17 | 47 |
future brain | 1.91e-17 | 47 |
gray matter | 5.16e-17 | 34 |
regional part of brain | 6.58e-17 | 46 |
pre-chordal neural plate | 6.41e-16 | 49 |
anterior neural tube | 8.44e-16 | 40 |
regional part of forebrain | 2.72e-15 | 39 |
forebrain | 2.72e-15 | 39 |
future forebrain | 2.72e-15 | 39 |
brain grey matter | 4.07e-15 | 29 |
regional part of telencephalon | 4.07e-15 | 29 |
telencephalon | 4.07e-15 | 29 |
cerebral cortex | 3.95e-12 | 21 |
cerebral hemisphere | 3.95e-12 | 21 |
pallium | 3.95e-12 | 21 |
structure with developmental contribution from neural crest | 1.16e-10 | 92 |
regional part of cerebral cortex | 1.91e-09 | 17 |
occipital lobe | 1.89e-07 | 10 |
visual cortex | 1.89e-07 | 10 |
neocortex | 1.89e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.