FFCP PHASE1:Mm9::chr15:81230225..81230262,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=70356|HGNC=|MCL_coexpression_id=60|UniProt=Q99L47|association_with_transcript=-101bp_to_NM_133726,uc007wwl.1_5end|description=CAGE_peak_3_at_St13_5end|id=chr15:81230225..81230262,-|ontology_enrichment_celltype=CL:0000117!5.74e-15!23;CL:0000337!5.74e-15!23;CL:0000540!1.18e-11!33;CL:0000047!1.18e-11!33;CL:0000031!1.18e-11!33;CL:0000404!1.18e-11!33;CL:0000393!1.08e-07!39;CL:0000211!1.08e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,5.47e-15,23;CL:0000337,5.47e-15,23;CL:0000540,1.14e-11,33;CL:0000047,1.14e-11,33;CL:0000031,1.14e-11,33;CL:0000404,1.14e-11,33;CL:0000393,1.05e-07,39;CL:0000211,1.05e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!8.06e-21!63;UBERON:0001049!2.41e-19!52;UBERON:0005068!2.41e-19!52;UBERON:0006241!2.41e-19!52;UBERON:0007135!2.41e-19!52;UBERON:0001017!3.10e-19!73;UBERON:0005743!3.10e-19!73;UBERON:0000955!1.62e-18!50;UBERON:0006238!1.62e-18!50;UBERON:0003056!1.65e-18!49;UBERON:0002346!1.89e-18!71;UBERON:0003075!1.89e-18!71;UBERON:0007284!1.89e-18!71;UBERON:0000073!2.43e-18!75;UBERON:0001016!2.43e-18!75;UBERON:0000153!3.57e-18!94;UBERON:0002616!5.37e-18!49;UBERON:0007811!7.04e-17!86;UBERON:0002020!2.21e-16!34;UBERON:0004121!1.04e-15!102;UBERON:0000924!1.04e-15!102;UBERON:0006601!1.04e-15!102;UBERON:0003080!1.17e-15!40;UBERON:0002780!4.38e-15!39;UBERON:0001890!4.38e-15!39;UBERON:0006240!4.38e-15!39;UBERON:0002791!1.05e-13!29;UBERON:0003528!1.05e-13!29;UBERON:0001893!1.05e-13!29;UBERON:0000956!3.09e-09!21;UBERON:0001869!3.09e-09!21;UBERON:0000203!3.09e-09!21;UBERON:0002619!5.91e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.30e-21,64;UBERON:0003075,1.30e-21,64;UBERON:0007284,1.30e-21,64;UBERON:0000073,7.21e-21,54;UBERON:0001049,2.07e-19,52;UBERON:0005068,2.07e-19,52;UBERON:0006241,2.07e-19,52;UBERON:0007135,2.07e-19,52;UBERON:0001017,2.82e-19,73;UBERON:0010314,1.06e-18,92;UBERON:0003056,1.67e-18,49;UBERON:0010371,1.74e-18,73;UBERON:0001016,2.22e-18,75;UBERON:0004121,1.03e-17,95;UBERON:0000924,1.03e-17,95;UBERON:0006601,1.03e-17,95;UBERON:0000955,1.20e-16,47;UBERON:0006238,1.20e-16,47;UBERON:0002020,2.26e-16,34;UBERON:0002616,3.86e-16,46;UBERON:0003080,1.19e-15,40;UBERON:0002780,4.48e-15,39;UBERON:0001890,4.48e-15,39;UBERON:0006240,4.48e-15,39;UBERON:0003528,1.09e-13,29;UBERON:0002791,1.09e-13,29;UBERON:0001893,1.09e-13,29;UBERON:0000956,3.22e-09,21;UBERON:0001869,3.22e-09,21;UBERON:0000203,3.22e-09,21;UBERON:0002619,6.20e-07,17|phase1_expression=10.5698239089164,0,0,0,0,2.51818907867835,0.700837921786577,14.2035655785734,2.111830832275,1.17032263160997,3.08192342805909,2.6324812468461,5.47842335779858,6.11942816932982,1.33243904726265,0.809901069559304,0,3.47008381894061,2.19383093769182,4.2438965179803,19.474913444595,0.893618560807968,1.56719873483361,0.799962113967033,1.60586496747019,0.57423196411502,0.430761996159075,2.58565479223067,0.380046838912748,0.252030129759931,0.221730510655305,1.27006134691926,1.23012957516914,0,2.02196133825892,3.32469290716985,2.24586291888606,1.67412652294763,0,2.09409497589519,2.35292595212406,0.683045484958446,3.39857247121808,1.88845226963366,1.72340783073175,1.83546752161682,0,3.48840250208714,0.439372365468944,1.55543919259427,2.79972843250725,5.75010257459886,2.51673909086605,2.90144856804538,2.35265659399725,0.257259436035947,1.14613375975503,3.6097046459421,35.6076971112892,45.4932242173948,31.691570175309,1.0165335962074,0.889294796111139,0,0,0,1.19840044207362,0.384218305321555,38.9872942279876,42.1218527594875,48.1644161494665,19.4242669394586,25.8416192913388,41.4018901346545,41.4052434798781,53.3146896233812,37.4393995397922,35.1140179734266,46.3891730433855,33.1034582202787,39.2481991054337,41.152156273984,34.0603258781685,25.3243174514256,31.9348337853533,35.9446874277875,31.1793980950035,33.9246991402047,1.74170244666323,4.38315048619356,2.6087803983151,1.72084775396277,0,1.07940638327563,0,0,7.02222100658759,1.87473354835864,3.63700406444016,2.47337702157238,8.30976176682415,3.84979432242953,2.54805239706646,0,2.16491041011214,1.52015919285059,1.01104889002957,3.31133251185274,5.95557132388495,1.33597925158342,6.59244241711316,3.34912026143355,3.68984795609694,3.46662073271032,2.58695155698551,3.39299796590124,1.23597483867187,1.15679485535929,6.19227386364912,7.92657564742305,3.97514733228708,3.87900202508178,3.72783522436244,30.1564220921894,26.5997317653088,0.766371165625774,2.51611761462433,3.59941638596045,3.30382590389968,32.0551968326321,20.5875271268382,42.596825366261,25.2045264278801,27.872984849006,35.7395436642443,29.2034273521964,4.78645010096487,2.36373244159177,0.758168275301024,6.31325567659422,13.0120442962704,15.4034409970427,16.3856538122868,13.5634336052144,12.3826428455417,18.4483757210184,18.7403449119458,14.2286853906459,12.287375597172,13.0483195315795,14.2520410572799,9.42541649438572,10.8438427197983,6.61679116392116,5.35033554660653,10.1507476077432,4.21327912387941,4.63226232806487,2.55747149456033,9.32065976409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| ||
|EntrezGene=70356 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q99L47 | |||
|association_with_transcript=-101bp_to_NM_133726,uc007wwl.1_5end | |||
|description=CAGE_peak_3_at_St13_5end | |||
|id=chr15:81230225..81230262,- | |||
|ontology_enrichment_celltype=CL:0000117!5.74e-15!23;CL:0000337!5.74e-15!23;CL:0000540!1.18e-11!33;CL:0000047!1.18e-11!33;CL:0000031!1.18e-11!33;CL:0000404!1.18e-11!33;CL:0000393!1.08e-07!39;CL:0000211!1.08e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.47e-15,23;CL:0000337,5.47e-15,23;CL:0000540,1.14e-11,33;CL:0000047,1.14e-11,33;CL:0000031,1.14e-11,33;CL:0000404,1.14e-11,33;CL:0000393,1.05e-07,39;CL:0000211,1.05e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!8.06e-21!63;UBERON:0001049!2.41e-19!52;UBERON:0005068!2.41e-19!52;UBERON:0006241!2.41e-19!52;UBERON:0007135!2.41e-19!52;UBERON:0001017!3.10e-19!73;UBERON:0005743!3.10e-19!73;UBERON:0000955!1.62e-18!50;UBERON:0006238!1.62e-18!50;UBERON:0003056!1.65e-18!49;UBERON:0002346!1.89e-18!71;UBERON:0003075!1.89e-18!71;UBERON:0007284!1.89e-18!71;UBERON:0000073!2.43e-18!75;UBERON:0001016!2.43e-18!75;UBERON:0000153!3.57e-18!94;UBERON:0002616!5.37e-18!49;UBERON:0007811!7.04e-17!86;UBERON:0002020!2.21e-16!34;UBERON:0004121!1.04e-15!102;UBERON:0000924!1.04e-15!102;UBERON:0006601!1.04e-15!102;UBERON:0003080!1.17e-15!40;UBERON:0002780!4.38e-15!39;UBERON:0001890!4.38e-15!39;UBERON:0006240!4.38e-15!39;UBERON:0002791!1.05e-13!29;UBERON:0003528!1.05e-13!29;UBERON:0001893!1.05e-13!29;UBERON:0000956!3.09e-09!21;UBERON:0001869!3.09e-09!21;UBERON:0000203!3.09e-09!21;UBERON:0002619!5.91e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.30e-21,64;UBERON:0003075,1.30e-21,64;UBERON:0007284,1.30e-21,64;UBERON:0000073,7.21e-21,54;UBERON:0001049,2.07e-19,52;UBERON:0005068,2.07e-19,52;UBERON:0006241,2.07e-19,52;UBERON:0007135,2.07e-19,52;UBERON:0001017,2.82e-19,73;UBERON:0010314,1.06e-18,92;UBERON:0003056,1.67e-18,49;UBERON:0010371,1.74e-18,73;UBERON:0001016,2.22e-18,75;UBERON:0004121,1.03e-17,95;UBERON:0000924,1.03e-17,95;UBERON:0006601,1.03e-17,95;UBERON:0000955,1.20e-16,47;UBERON:0006238,1.20e-16,47;UBERON:0002020,2.26e-16,34;UBERON:0002616,3.86e-16,46;UBERON:0003080,1.19e-15,40;UBERON:0002780,4.48e-15,39;UBERON:0001890,4.48e-15,39;UBERON:0006240,4.48e-15,39;UBERON:0003528,1.09e-13,29;UBERON:0002791,1.09e-13,29;UBERON:0001893,1.09e-13,29;UBERON:0000956,3.22e-09,21;UBERON:0001869,3.22e-09,21;UBERON:0000203,3.22e-09,21;UBERON:0002619,6.20e-07,17 | |||
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| |||
|short_description=p3@St13 | |||
}} |
Revision as of 11:17, 13 September 2013
Short description: | p3@St13 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_St13_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -101bp_to_NM_133726, uc007wwl.1_5end |
EntrezGene: | St13 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.47e-15 | 23 |
neuroblast (sensu Vertebrata) | 5.47e-15 | 23 |
neuron | 1.14e-11 | 33 |
neuronal stem cell | 1.14e-11 | 33 |
neuroblast | 1.14e-11 | 33 |
electrically signaling cell | 1.14e-11 | 33 |
electrically responsive cell | 1.05e-07 | 39 |
electrically active cell | 1.05e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.30e-21 | 64 |
neural plate | 1.30e-21 | 64 |
presumptive neural plate | 1.30e-21 | 64 |
regional part of nervous system | 7.21e-21 | 54 |
neural tube | 2.07e-19 | 52 |
neural rod | 2.07e-19 | 52 |
future spinal cord | 2.07e-19 | 52 |
neural keel | 2.07e-19 | 52 |
central nervous system | 2.82e-19 | 73 |
structure with developmental contribution from neural crest | 1.06e-18 | 92 |
pre-chordal neural plate | 1.67e-18 | 49 |
ecto-epithelium | 1.74e-18 | 73 |
nervous system | 2.22e-18 | 75 |
ectoderm-derived structure | 1.03e-17 | 95 |
ectoderm | 1.03e-17 | 95 |
presumptive ectoderm | 1.03e-17 | 95 |
brain | 1.20e-16 | 47 |
future brain | 1.20e-16 | 47 |
gray matter | 2.26e-16 | 34 |
regional part of brain | 3.86e-16 | 46 |
anterior neural tube | 1.19e-15 | 40 |
regional part of forebrain | 4.48e-15 | 39 |
forebrain | 4.48e-15 | 39 |
future forebrain | 4.48e-15 | 39 |
brain grey matter | 1.09e-13 | 29 |
regional part of telencephalon | 1.09e-13 | 29 |
telencephalon | 1.09e-13 | 29 |
cerebral cortex | 3.22e-09 | 21 |
cerebral hemisphere | 3.22e-09 | 21 |
pallium | 3.22e-09 | 21 |
regional part of cerebral cortex | 6.20e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.