FFCP PHASE1:Mm9::chr15:84686542..84686569,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=271305|HGNC=|MCL_coexpression_id=1352|UniProt=F8WHE8,Q8C966|association_with_transcript=0bp_to_ENSMUST00000089001,NM_001081166,NR_030731,uc007xco.2,uc011zxh.1_5end|description=CAGE_peak_1_at_Phf21b_5end|id=chr15:84686542..84686569,-|ontology_enrichment_celltype=CL:0000540!3.70e-11!33;CL:0000047!3.70e-11!33;CL:0000031!3.70e-11!33;CL:0000404!3.70e-11!33;CL:0000221!5.90e-08!44;CL:0000133!5.90e-08!44;CL:0002319!6.23e-08!43;CL:0000117!6.65e-08!23;CL:0000337!6.65e-08!23|ontology_enrichment_celltype_v019_2=CL:0000540,2.10e-12,33;CL:0000047,2.10e-12,33;CL:0000031,2.10e-12,33;CL:0000404,2.10e-12,33;CL:0000117,7.83e-09,23;CL:0000337,7.83e-09,23;CL:0000221,2.00e-08,44;CL:0000133,2.00e-08,44;CL:0002319,2.13e-08,43;CL:0000393,3.08e-08,39;CL:0000211,3.08e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.23e-21!73;UBERON:0005743!2.23e-21!73;UBERON:0000073!3.36e-20!75;UBERON:0001016!3.36e-20!75;UBERON:0000033!1.82e-19!63;UBERON:0004121!3.88e-19!102;UBERON:0000924!3.88e-19!102;UBERON:0006601!3.88e-19!102;UBERON:0002346!1.07e-18!71;UBERON:0003075!1.07e-18!71;UBERON:0007284!1.07e-18!71;UBERON:0003056!5.49e-18!49;UBERON:0000955!1.03e-15!50;UBERON:0006238!1.03e-15!50;UBERON:0001049!2.47e-15!52;UBERON:0005068!2.47e-15!52;UBERON:0006241!2.47e-15!52;UBERON:0007135!2.47e-15!52;UBERON:0002616!3.59e-15!49;UBERON:0002780!4.41e-14!39;UBERON:0001890!4.41e-14!39;UBERON:0006240!4.41e-14!39;UBERON:0003080!1.17e-13!40;UBERON:0002020!3.34e-11!34;UBERON:0002791!7.32e-11!29;UBERON:0003528!7.32e-11!29;UBERON:0001893!7.32e-11!29;UBERON:0000956!6.15e-10!21;UBERON:0001869!6.15e-10!21;UBERON:0000203!6.15e-10!21;UBERON:0000153!6.28e-10!94;UBERON:0007811!1.20e-08!86;UBERON:0002619!1.61e-07!17;UBERON:0002021!6.77e-07!10;UBERON:0000411!6.77e-07!10;UBERON:0001950!6.77e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.52e-23,73;UBERON:0002346,1.55e-22,64;UBERON:0003075,1.55e-22,64;UBERON:0007284,1.55e-22,64;UBERON:0004121,9.50e-22,95;UBERON:0000924,9.50e-22,95;UBERON:0006601,9.50e-22,95;UBERON:0001016,2.11e-21,75;UBERON:0003056,1.05e-19,49;UBERON:0010371,1.31e-18,73;UBERON:0000073,7.75e-17,54;UBERON:0001049,1.90e-16,52;UBERON:0005068,1.90e-16,52;UBERON:0006241,1.90e-16,52;UBERON:0007135,1.90e-16,52;UBERON:0000955,3.46e-16,47;UBERON:0006238,3.46e-16,47;UBERON:0002780,7.67e-16,39;UBERON:0001890,7.67e-16,39;UBERON:0006240,7.67e-16,39;UBERON:0002616,1.35e-15,46;UBERON:0003080,5.91e-15,40;UBERON:0002020,1.18e-12,34;UBERON:0010314,1.67e-12,92;UBERON:0003528,2.61e-12,29;UBERON:0002791,2.61e-12,29;UBERON:0001893,2.61e-12,29;UBERON:0000956,5.74e-11,21;UBERON:0001869,5.74e-11,21;UBERON:0000203,5.74e-11,21;UBERON:0002619,2.62e-08,17;UBERON:0002021,2.10e-07,10;UBERON:0000411,2.10e-07,10;UBERON:0001950,2.10e-07,10|phase1_expression=2.40223270657191,0,0.909998478779072,1.51232105653415,0,6.37941233265181,3.73780224952841,0.645616617207881,0.84473233291,0.70219357896598,0.34243593645101,0.239316476986009,0.342401459862411,0.262261207256992,0.333109761815663,0.202475267389826,0,0.315462165358238,0.548457734422955,0.42438965179803,3.06155844543851,1.29078236561151,3.39559725880616,0.95995453676044,1.14704640533585,0.57423196411502,0,1.72376986148711,1.71021077510736,1.26015064879965,1.55211357458713,0,0,0,4.91047753577167,2.99222361645286,3.87921776898501,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0,0.782391344348039,2.61630187656536,0,0.58328969722285,1.25987779462826,1.43752564364972,0.335565212115473,1.45072428402269,1.34437519656986,0,0.286533439938757,0,8.49729135610311,7.40587370980846,8.87363964908651,0,0,0,0.988866362566974,0,0.599200221036809,1.53687322128622,22.1895770340142,23.0860154547191,20.1911962897327,1.14260393761521,1.54607978666129,12.9840247167851,19.1690942036473,14.7075005857603,2.20231761998777,2.29837208553338,2.61131106535614,8.44072241473241,9.78917786545783,7.8137005583514,1.95428099300967,0,1.22238598221448,2.35702868378934,1.70846016958924,6.52398060388552,0.530083353332288,0.604572480854284,5.2175607966302,0.860423876981386,0,0.539703191637817,1.29955283489534,0.448026887097336,0.561777680527007,0.170430322578058,0,0.35333957451034,1.54927761754349,0,2.54805239706646,0,0.216491041011214,0,0,0.34255163915718,5.69663344023778,2.52351636410202,1.04091196059682,0.608930956624282,0.461230994512117,1.50722640552623,0.823120949949934,0.628332956648377,1.23597483867187,0.722996784599558,0,0.485300549842228,0.883366073841574,1.45462575940567,3.72783522436244,10.8328894894272,9.00620839297857,2.81002760729451,0.359445373517761,1.19980546198682,0.127070227073065,0.898743836428936,2.28750301409313,5.52879149296603,4.51943232499919,3.06858548796397,3.32460871295296,2.43361894601636,0.305518091550949,0.248813941220186,0.505445516867349,5.05060454127538,2.86264974517948,2.5289231487682,5.22180176435513,4.67184935290717,5.64702942956021,7.30248205623644,7.30873451565885,6.72628763921441,3.23351989399263,2.83659120251729,2.81521798662318,1.31517439456545,2.22437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| ||
|EntrezGene=271305 | |||
|HGNC= | |||
|MCL_coexpression_id=1352 | |||
|UniProt=F8WHE8,Q8C966 | |||
|association_with_transcript=0bp_to_ENSMUST00000089001,NM_001081166,NR_030731,uc007xco.2,uc011zxh.1_5end | |||
|description=CAGE_peak_1_at_Phf21b_5end | |||
|id=chr15:84686542..84686569,- | |||
|ontology_enrichment_celltype=CL:0000540!3.70e-11!33;CL:0000047!3.70e-11!33;CL:0000031!3.70e-11!33;CL:0000404!3.70e-11!33;CL:0000221!5.90e-08!44;CL:0000133!5.90e-08!44;CL:0002319!6.23e-08!43;CL:0000117!6.65e-08!23;CL:0000337!6.65e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.10e-12,33;CL:0000047,2.10e-12,33;CL:0000031,2.10e-12,33;CL:0000404,2.10e-12,33;CL:0000117,7.83e-09,23;CL:0000337,7.83e-09,23;CL:0000221,2.00e-08,44;CL:0000133,2.00e-08,44;CL:0002319,2.13e-08,43;CL:0000393,3.08e-08,39;CL:0000211,3.08e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.23e-21!73;UBERON:0005743!2.23e-21!73;UBERON:0000073!3.36e-20!75;UBERON:0001016!3.36e-20!75;UBERON:0000033!1.82e-19!63;UBERON:0004121!3.88e-19!102;UBERON:0000924!3.88e-19!102;UBERON:0006601!3.88e-19!102;UBERON:0002346!1.07e-18!71;UBERON:0003075!1.07e-18!71;UBERON:0007284!1.07e-18!71;UBERON:0003056!5.49e-18!49;UBERON:0000955!1.03e-15!50;UBERON:0006238!1.03e-15!50;UBERON:0001049!2.47e-15!52;UBERON:0005068!2.47e-15!52;UBERON:0006241!2.47e-15!52;UBERON:0007135!2.47e-15!52;UBERON:0002616!3.59e-15!49;UBERON:0002780!4.41e-14!39;UBERON:0001890!4.41e-14!39;UBERON:0006240!4.41e-14!39;UBERON:0003080!1.17e-13!40;UBERON:0002020!3.34e-11!34;UBERON:0002791!7.32e-11!29;UBERON:0003528!7.32e-11!29;UBERON:0001893!7.32e-11!29;UBERON:0000956!6.15e-10!21;UBERON:0001869!6.15e-10!21;UBERON:0000203!6.15e-10!21;UBERON:0000153!6.28e-10!94;UBERON:0007811!1.20e-08!86;UBERON:0002619!1.61e-07!17;UBERON:0002021!6.77e-07!10;UBERON:0000411!6.77e-07!10;UBERON:0001950!6.77e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.52e-23,73;UBERON:0002346,1.55e-22,64;UBERON:0003075,1.55e-22,64;UBERON:0007284,1.55e-22,64;UBERON:0004121,9.50e-22,95;UBERON:0000924,9.50e-22,95;UBERON:0006601,9.50e-22,95;UBERON:0001016,2.11e-21,75;UBERON:0003056,1.05e-19,49;UBERON:0010371,1.31e-18,73;UBERON:0000073,7.75e-17,54;UBERON:0001049,1.90e-16,52;UBERON:0005068,1.90e-16,52;UBERON:0006241,1.90e-16,52;UBERON:0007135,1.90e-16,52;UBERON:0000955,3.46e-16,47;UBERON:0006238,3.46e-16,47;UBERON:0002780,7.67e-16,39;UBERON:0001890,7.67e-16,39;UBERON:0006240,7.67e-16,39;UBERON:0002616,1.35e-15,46;UBERON:0003080,5.91e-15,40;UBERON:0002020,1.18e-12,34;UBERON:0010314,1.67e-12,92;UBERON:0003528,2.61e-12,29;UBERON:0002791,2.61e-12,29;UBERON:0001893,2.61e-12,29;UBERON:0000956,5.74e-11,21;UBERON:0001869,5.74e-11,21;UBERON:0000203,5.74e-11,21;UBERON:0002619,2.62e-08,17;UBERON:0002021,2.10e-07,10;UBERON:0000411,2.10e-07,10;UBERON:0001950,2.10e-07,10 | |||
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| |||
|short_description=p1@Phf21b | |||
}} |
Revision as of 11:27, 13 September 2013
Short description: | p1@Phf21b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Phf21b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1352 |
Association with transcript: | 0bp_to_ENSMUST00000089001, NM_001081166, NR_030731, uc007xco.2, uc011zxh.1_5end |
EntrezGene: | Phf21b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.10e-12 | 33 |
neuronal stem cell | 2.10e-12 | 33 |
neuroblast | 2.10e-12 | 33 |
electrically signaling cell | 2.10e-12 | 33 |
CNS neuron (sensu Vertebrata) | 7.83e-09 | 23 |
neuroblast (sensu Vertebrata) | 7.83e-09 | 23 |
ectodermal cell | 2.00e-08 | 44 |
neurectodermal cell | 2.00e-08 | 44 |
neural cell | 2.13e-08 | 43 |
electrically responsive cell | 3.08e-08 | 39 |
electrically active cell | 3.08e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.52e-23 | 73 |
neurectoderm | 1.55e-22 | 64 |
neural plate | 1.55e-22 | 64 |
presumptive neural plate | 1.55e-22 | 64 |
ectoderm-derived structure | 9.50e-22 | 95 |
ectoderm | 9.50e-22 | 95 |
presumptive ectoderm | 9.50e-22 | 95 |
nervous system | 2.11e-21 | 75 |
pre-chordal neural plate | 1.05e-19 | 49 |
ecto-epithelium | 1.31e-18 | 73 |
regional part of nervous system | 7.75e-17 | 54 |
neural tube | 1.90e-16 | 52 |
neural rod | 1.90e-16 | 52 |
future spinal cord | 1.90e-16 | 52 |
neural keel | 1.90e-16 | 52 |
brain | 3.46e-16 | 47 |
future brain | 3.46e-16 | 47 |
regional part of forebrain | 7.67e-16 | 39 |
forebrain | 7.67e-16 | 39 |
future forebrain | 7.67e-16 | 39 |
regional part of brain | 1.35e-15 | 46 |
anterior neural tube | 5.91e-15 | 40 |
gray matter | 1.18e-12 | 34 |
structure with developmental contribution from neural crest | 1.67e-12 | 92 |
brain grey matter | 2.61e-12 | 29 |
regional part of telencephalon | 2.61e-12 | 29 |
telencephalon | 2.61e-12 | 29 |
cerebral cortex | 5.74e-11 | 21 |
cerebral hemisphere | 5.74e-11 | 21 |
pallium | 5.74e-11 | 21 |
regional part of cerebral cortex | 2.62e-08 | 17 |
occipital lobe | 2.10e-07 | 10 |
visual cortex | 2.10e-07 | 10 |
neocortex | 2.10e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.