FFCP PHASE1:Mm9::chr17:25946035..25946116,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=214931|HGNC=|MCL_coexpression_id=2|UniProt=A2RT62,B2RPY3|association_with_transcript=5bp_to_ENSMUST00000045692,NM_001164225,uc012anl.1_5end|description=CAGE_peak_1_at_Fbxl16_5end|id=chr17:25946035..25946116,+|ontology_enrichment_celltype=CL:0002319!1.00e-14!43;CL:0000221!1.10e-14!44;CL:0000133!1.10e-14!44;CL:0000540!2.32e-14!33;CL:0000047!2.32e-14!33;CL:0000031!2.32e-14!33;CL:0000404!2.32e-14!33;CL:0000393!7.23e-13!39;CL:0000211!7.23e-13!39;CL:0000055!1.04e-12!50;CL:0000117!1.48e-12!23;CL:0000337!1.48e-12!23|ontology_enrichment_celltype_v019_2=CL:0002319,1.31e-15,43;CL:0000221,1.45e-15,44;CL:0000133,1.45e-15,44;CL:0000540,3.19e-15,33;CL:0000047,3.19e-15,33;CL:0000031,3.19e-15,33;CL:0000404,3.19e-15,33;CL:0000393,1.25e-13,39;CL:0000211,1.25e-13,39;CL:0000117,2.70e-13,23;CL:0000337,2.70e-13,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!9.79e-34!75;UBERON:0001016!9.79e-34!75;UBERON:0004121!1.02e-33!102;UBERON:0000924!1.02e-33!102;UBERON:0006601!1.02e-33!102;UBERON:0001017!1.76e-33!73;UBERON:0005743!1.76e-33!73;UBERON:0002346!9.61e-33!71;UBERON:0003075!9.61e-33!71;UBERON:0007284!9.61e-33!71;UBERON:0000033!7.53e-28!63;UBERON:0001049!3.40e-26!52;UBERON:0005068!3.40e-26!52;UBERON:0006241!3.40e-26!52;UBERON:0007135!3.40e-26!52;UBERON:0000955!1.94e-25!50;UBERON:0006238!1.94e-25!50;UBERON:0002616!9.65e-25!49;UBERON:0003056!3.18e-23!49;UBERON:0003080!2.06e-20!40;UBERON:0002780!8.51e-20!39;UBERON:0001890!8.51e-20!39;UBERON:0006240!8.51e-20!39;UBERON:0002020!3.61e-19!34;UBERON:0002791!1.64e-16!29;UBERON:0003528!1.64e-16!29;UBERON:0001893!1.64e-16!29;UBERON:0000956!4.44e-12!21;UBERON:0001869!4.44e-12!21;UBERON:0000203!4.44e-12!21;UBERON:0007811!1.56e-11!86;UBERON:0002619!3.59e-10!17;UBERON:0000153!4.08e-10!94;UBERON:0002021!4.94e-08!10;UBERON:0000411!4.94e-08!10;UBERON:0001950!4.94e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.52e-36,75;UBERON:0001017,1.22e-35,73;UBERON:0004121,2.17e-32,95;UBERON:0000924,2.17e-32,95;UBERON:0006601,2.17e-32,95;UBERON:0002346,5.24e-32,64;UBERON:0003075,5.24e-32,64;UBERON:0007284,5.24e-32,64;UBERON:0000073,1.98e-29,54;UBERON:0001049,7.39e-28,52;UBERON:0005068,7.39e-28,52;UBERON:0006241,7.39e-28,52;UBERON:0007135,7.39e-28,52;UBERON:0010371,9.93e-26,73;UBERON:0000955,6.71e-25,47;UBERON:0006238,6.71e-25,47;UBERON:0003056,1.10e-24,49;UBERON:0002616,3.60e-24,46;UBERON:0010314,1.43e-23,92;UBERON:0003080,1.10e-21,40;UBERON:0002780,5.02e-21,39;UBERON:0001890,5.02e-21,39;UBERON:0006240,5.02e-21,39;UBERON:0002020,2.35e-20,34;UBERON:0003528,1.62e-17,29;UBERON:0002791,1.62e-17,29;UBERON:0001893,1.62e-17,29;UBERON:0000956,8.70e-13,21;UBERON:0001869,8.70e-13,21;UBERON:0000203,8.70e-13,21;UBERON:0002619,9.47e-11,17;UBERON:0002021,1.81e-08,10;UBERON:0000411,1.81e-08,10;UBERON:0001950,1.81e-08,10|phase1_expression=3.68342348341026,0.697950815278722,0.454999239389536,0,0,1.84667199103079,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,59.1050866549935,0.0992909512008853,0,0.319984845586813,0.22940928106717,1.14846392823004,0.430761996159075,0.861884930743556,0.190023419456374,0.504060259519861,0.886922042621219,0,0,0,0.288851619751275,0.166234645358492,0.612508068787107,0,0,0,0,0,0,1.38486499773135,1.31790010585369,2.0190142737785,1.56478268869608,5.45062890951116,3.51497892375155,3.88859798148567,3.49966054063406,1.43752564364972,0,0,0,1.28629718017973,2.29226751951005,2.06268836910977,28.1219880594841,22.2176211294254,24.719424736741,2.37191172448392,1.77858959222228,0,0,0.7104801149461,4.19440154725767,11.9107674649682,15.9682002955056,17.1457541681247,14.302097371894,49.7032712862618,42.6276284036614,16.5362578940188,19.073248732629,22.9804696652505,92.4973400394865,116.961601686032,97.6937551509708,24.9265083810066,23.6038120494217,23.962015045611,52.2072208132582,58.5273114432947,85.8726152505673,38.3017161115768,30.7522830526062,22.7407323906867,4.01348824665875,4.30757892608677,0.289864488701678,0,0,0,0,0,8.28622078777336,6.64678258054425,4.41636207824877,4.59341446863442,2.67602497575693,2.56652954828636,2.54805239706646,0,0,0,0,8.10705546005326,0.776813650941515,15.4379824627418,4.3371331691534,7.30717147949139,6.45723392316964,5.72746034099966,7.52567725668511,11.1843266283411,0,1.44599356919912,0.884610551949874,1.94120219936891,1.32504911076236,1.45462575940567,1.86391761218122,89.883704682545,98.021058788697,1.53274233125155,0,0,0,81.1865265574139,548.085722176715,44.6072950000669,362.249883280704,344.448721023955,116.776881042473,226.48880324259,1.83310854930569,0.746441823660558,0,8.41767423545896,2.86264974517948,4.82794419310293,6.30217454318722,5.72678307775717,11.9063873514824,10.8896662242122,15.9292931751539,19.9201595469042,0.215567992932842,1.13463648100692,1.05570674498369,2.19195732427575,2.50242524303038,0.696504333044333,0.411564272815887,1.59227413454795,0,0,0,0.828503090142008,0.469052119962192,0.36012412292203,1.42046841351126,0.393528463494808,1.23413690309903,0.232533944750408,0,0.2335306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| ||
|EntrezGene=214931 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=A2RT62,B2RPY3 | |||
|association_with_transcript=5bp_to_ENSMUST00000045692,NM_001164225,uc012anl.1_5end | |||
|description=CAGE_peak_1_at_Fbxl16_5end | |||
|id=chr17:25946035..25946116,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.00e-14!43;CL:0000221!1.10e-14!44;CL:0000133!1.10e-14!44;CL:0000540!2.32e-14!33;CL:0000047!2.32e-14!33;CL:0000031!2.32e-14!33;CL:0000404!2.32e-14!33;CL:0000393!7.23e-13!39;CL:0000211!7.23e-13!39;CL:0000055!1.04e-12!50;CL:0000117!1.48e-12!23;CL:0000337!1.48e-12!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.31e-15,43;CL:0000221,1.45e-15,44;CL:0000133,1.45e-15,44;CL:0000540,3.19e-15,33;CL:0000047,3.19e-15,33;CL:0000031,3.19e-15,33;CL:0000404,3.19e-15,33;CL:0000393,1.25e-13,39;CL:0000211,1.25e-13,39;CL:0000117,2.70e-13,23;CL:0000337,2.70e-13,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.79e-34!75;UBERON:0001016!9.79e-34!75;UBERON:0004121!1.02e-33!102;UBERON:0000924!1.02e-33!102;UBERON:0006601!1.02e-33!102;UBERON:0001017!1.76e-33!73;UBERON:0005743!1.76e-33!73;UBERON:0002346!9.61e-33!71;UBERON:0003075!9.61e-33!71;UBERON:0007284!9.61e-33!71;UBERON:0000033!7.53e-28!63;UBERON:0001049!3.40e-26!52;UBERON:0005068!3.40e-26!52;UBERON:0006241!3.40e-26!52;UBERON:0007135!3.40e-26!52;UBERON:0000955!1.94e-25!50;UBERON:0006238!1.94e-25!50;UBERON:0002616!9.65e-25!49;UBERON:0003056!3.18e-23!49;UBERON:0003080!2.06e-20!40;UBERON:0002780!8.51e-20!39;UBERON:0001890!8.51e-20!39;UBERON:0006240!8.51e-20!39;UBERON:0002020!3.61e-19!34;UBERON:0002791!1.64e-16!29;UBERON:0003528!1.64e-16!29;UBERON:0001893!1.64e-16!29;UBERON:0000956!4.44e-12!21;UBERON:0001869!4.44e-12!21;UBERON:0000203!4.44e-12!21;UBERON:0007811!1.56e-11!86;UBERON:0002619!3.59e-10!17;UBERON:0000153!4.08e-10!94;UBERON:0002021!4.94e-08!10;UBERON:0000411!4.94e-08!10;UBERON:0001950!4.94e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.52e-36,75;UBERON:0001017,1.22e-35,73;UBERON:0004121,2.17e-32,95;UBERON:0000924,2.17e-32,95;UBERON:0006601,2.17e-32,95;UBERON:0002346,5.24e-32,64;UBERON:0003075,5.24e-32,64;UBERON:0007284,5.24e-32,64;UBERON:0000073,1.98e-29,54;UBERON:0001049,7.39e-28,52;UBERON:0005068,7.39e-28,52;UBERON:0006241,7.39e-28,52;UBERON:0007135,7.39e-28,52;UBERON:0010371,9.93e-26,73;UBERON:0000955,6.71e-25,47;UBERON:0006238,6.71e-25,47;UBERON:0003056,1.10e-24,49;UBERON:0002616,3.60e-24,46;UBERON:0010314,1.43e-23,92;UBERON:0003080,1.10e-21,40;UBERON:0002780,5.02e-21,39;UBERON:0001890,5.02e-21,39;UBERON:0006240,5.02e-21,39;UBERON:0002020,2.35e-20,34;UBERON:0003528,1.62e-17,29;UBERON:0002791,1.62e-17,29;UBERON:0001893,1.62e-17,29;UBERON:0000956,8.70e-13,21;UBERON:0001869,8.70e-13,21;UBERON:0000203,8.70e-13,21;UBERON:0002619,9.47e-11,17;UBERON:0002021,1.81e-08,10;UBERON:0000411,1.81e-08,10;UBERON:0001950,1.81e-08,10 | |||
|phase1_expression=3.68342348341026,0.697950815278722,0.454999239389536,0,0,1.84667199103079,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,59.1050866549935,0.0992909512008853,0,0.319984845586813,0.22940928106717,1.14846392823004,0.430761996159075,0.861884930743556,0.190023419456374,0.504060259519861,0.886922042621219,0,0,0,0.288851619751275,0.166234645358492,0.612508068787107,0,0,0,0,0,0,1.38486499773135,1.31790010585369,2.0190142737785,1.56478268869608,5.45062890951116,3.51497892375155,3.88859798148567,3.49966054063406,1.43752564364972,0,0,0,1.28629718017973,2.29226751951005,2.06268836910977,28.1219880594841,22.2176211294254,24.719424736741,2.37191172448392,1.77858959222228,0,0,0.7104801149461,4.19440154725767,11.9107674649682,15.9682002955056,17.1457541681247,14.302097371894,49.7032712862618,42.6276284036614,16.5362578940188,19.073248732629,22.9804696652505,92.4973400394865,116.961601686032,97.6937551509708,24.9265083810066,23.6038120494217,23.962015045611,52.2072208132582,58.5273114432947,85.8726152505673,38.3017161115768,30.7522830526062,22.7407323906867,4.01348824665875,4.30757892608677,0.289864488701678,0,0,0,0,0,8.28622078777336,6.64678258054425,4.41636207824877,4.59341446863442,2.67602497575693,2.56652954828636,2.54805239706646,0,0,0,0,8.10705546005326,0.776813650941515,15.4379824627418,4.3371331691534,7.30717147949139,6.45723392316964,5.72746034099966,7.52567725668511,11.1843266283411,0,1.44599356919912,0.884610551949874,1.94120219936891,1.32504911076236,1.45462575940567,1.86391761218122,89.883704682545,98.021058788697,1.53274233125155,0,0,0,81.1865265574139,548.085722176715,44.6072950000669,362.249883280704,344.448721023955,116.776881042473,226.48880324259,1.83310854930569,0.746441823660558,0,8.41767423545896,2.86264974517948,4.82794419310293,6.30217454318722,5.72678307775717,11.9063873514824,10.8896662242122,15.9292931751539,19.9201595469042,0.215567992932842,1.13463648100692,1.05570674498369,2.19195732427575,2.50242524303038,0.696504333044333,0.411564272815887,1.59227413454795,0,0,0,0.828503090142008,0.469052119962192,0.36012412292203,1.42046841351126,0.393528463494808,1.23413690309903,0.232533944750408,0,0.233530684734339,0.658239399653922,1.31333971263276,0.405344047729279,1.31579988682799,1.09775057645525,0.536825675041487,346.97841513081,32.3120482870953,0.330418782983798,1.05780226665418,1.49301775374664,1.85789337488351,2.19074684247559,1.21010114774006,1.55664630691409,0.380451252225118,0,1.31759163779209,1.25667604400135,1.98956472041151,0.974820435595601,0,1.08069024937347,0.796565093017469,0.569003702859245,2.05647322697512,0,1.4255592949172,0.775809948670503,0.911765658574141,0.69560190836683,0.590440591918409,0.31399745568275,0.616985819609003,0.296452627087149,0.333690211432188,0.196558995113203,0.449724224769707,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0.252578877947112,0.179397413521912,0.482443521363367,1.84753190166605,0.568474235311454,0.814824882210129,0.509235257325564,0.704070744865506,0.502518772325447,0.952174563544055,0.390267295715598,0.788175720530955,0.8858587585951,0.956728611944923,1.14704320301017,1.72684981865896,1.44649058581512,0,0,0.491764273019036,0,40.4587486769236,43.1339006659308,5.08198330667694,1.00988370881749,4.41711507182759,5.0757036758563,8.18608911384636,2.86762557543062,4.01037613348309,8.49229592366497,8.50102473517278,8.18316402151673,7.51046778098395,138.810808694221,0.99358059645788,2.84904965867608,3.74640006513225,3.62934270539578,3.98235415019888,5.82673526771955,4.53485335447127,3.39489143560617,6.20133975049623,3.3817866273832,6.71913562237375,6.18007340111759,5.34746067577082,4.42451461110142,5.27093042874994,1.03135543248187,55.1512161321137,2.52085531643834,4.91562998374467,3.21505552547388,8.15765074754458,9.27517851530767,14.1512157717824,15.8321773539592,0.938686832254841,0.42366414172764,0.661585194164886,1.31909002353184,0.645857706783622,0.663442174209714,0,0.328281799490123,0.582961673259701,37.455911006123,0.512612642393558,1.44470807574256,1.29636169158798,0,0.546776910884101,0.457556346413045,0,0,0,1.90934123603023,1.26534397432454,1.82987520414164,2.16010681643603,2.09088296014469,1.31017538247707,1.48350781023303,3.14083131756277,1.83229159388821,1.29614973291793,3.10669656543463,0,1.34564891439581,1.82004339502807,1.94451188344048,1.93739735216597,2.53434188236167,0.821500670520278,0.2604087696879,0.419437377702843,0.483168241652012,0.288030006257865,0,1.21635129174099,0.205421914329655,0.25984164595559,0.179026695667481,0,0.120195449519969,0,0.100966449948148,0.0762068066549998,0,0,0,0.116876902181569,1.13365191807606,0,0.179427713218951,0.839423081820392,2.31827512838629,2.62755465631655,1.64836461840539,1.50057865355346,0,264.868614187404,277.576117613828,272.698264397153,359.173151098307,394.60753138789,413.200461872166,345.611520118685,323.780945118215,307.683695700275,337.579723262187,3.73634451303036,6.3843979744165,1.53660245178721,2.18796045361465,4.61148957781561,6.61836630420051,6.00066165064361,4.1207011447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| |||
|short_description=p1@Fbxl16 | |||
}} |
Revision as of 13:47, 13 September 2013
Short description: | p1@Fbxl16 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fbxl16_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 5bp_to_ENSMUST00000045692, NM_001164225, uc012anl.1_5end |
EntrezGene: | Fbxl16 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.31e-15 | 43 |
ectodermal cell | 1.45e-15 | 44 |
neurectodermal cell | 1.45e-15 | 44 |
neuron | 3.19e-15 | 33 |
neuronal stem cell | 3.19e-15 | 33 |
neuroblast | 3.19e-15 | 33 |
electrically signaling cell | 3.19e-15 | 33 |
electrically responsive cell | 1.25e-13 | 39 |
electrically active cell | 1.25e-13 | 39 |
CNS neuron (sensu Vertebrata) | 2.70e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.70e-13 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.52e-36 | 75 |
central nervous system | 1.22e-35 | 73 |
ectoderm-derived structure | 2.17e-32 | 95 |
ectoderm | 2.17e-32 | 95 |
presumptive ectoderm | 2.17e-32 | 95 |
neurectoderm | 5.24e-32 | 64 |
neural plate | 5.24e-32 | 64 |
presumptive neural plate | 5.24e-32 | 64 |
regional part of nervous system | 1.98e-29 | 54 |
neural tube | 7.39e-28 | 52 |
neural rod | 7.39e-28 | 52 |
future spinal cord | 7.39e-28 | 52 |
neural keel | 7.39e-28 | 52 |
ecto-epithelium | 9.93e-26 | 73 |
brain | 6.71e-25 | 47 |
future brain | 6.71e-25 | 47 |
pre-chordal neural plate | 1.10e-24 | 49 |
regional part of brain | 3.60e-24 | 46 |
structure with developmental contribution from neural crest | 1.43e-23 | 92 |
anterior neural tube | 1.10e-21 | 40 |
regional part of forebrain | 5.02e-21 | 39 |
forebrain | 5.02e-21 | 39 |
future forebrain | 5.02e-21 | 39 |
gray matter | 2.35e-20 | 34 |
brain grey matter | 1.62e-17 | 29 |
regional part of telencephalon | 1.62e-17 | 29 |
telencephalon | 1.62e-17 | 29 |
cerebral cortex | 8.70e-13 | 21 |
cerebral hemisphere | 8.70e-13 | 21 |
pallium | 8.70e-13 | 21 |
regional part of cerebral cortex | 9.47e-11 | 17 |
occipital lobe | 1.81e-08 | 10 |
visual cortex | 1.81e-08 | 10 |
neocortex | 1.81e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.