FFCP PHASE1:Mm9::chr17:56109919..56110000,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20420|HGNC=|MCL_coexpression_id=13|UniProt=O88834|association_with_transcript=14bp_to_NM_001159523,NM_009168,uc008dal.2,uc008dam.2_5end|description=CAGE_peak_1_at_Shd_5end|id=chr17:56109919..56110000,+|ontology_enrichment_celltype=CL:0000221!1.11e-15!44;CL:0000133!1.11e-15!44;CL:0002319!2.56e-15!43;CL:0000117!3.64e-15!23;CL:0000337!3.64e-15!23;CL:0000540!1.65e-14!33;CL:0000047!1.65e-14!33;CL:0000031!1.65e-14!33;CL:0000404!1.65e-14!33;CL:0000055!3.29e-11!50;CL:0000393!9.75e-11!39;CL:0000211!9.75e-11!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.97e-16,23;CL:0000337,4.97e-16,23;CL:0000221,6.00e-16,44;CL:0000133,6.00e-16,44;CL:0002319,1.45e-15,43;CL:0000540,7.19e-15,33;CL:0000047,7.19e-15,33;CL:0000031,7.19e-15,33;CL:0000404,7.19e-15,33;CL:0000393,5.17e-11,39;CL:0000211,5.17e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.24e-32!73;UBERON:0005743!2.24e-32!73;UBERON:0000073!1.34e-31!75;UBERON:0001016!1.34e-31!75;UBERON:0004121!7.35e-28!102;UBERON:0000924!7.35e-28!102;UBERON:0006601!7.35e-28!102;UBERON:0002346!1.35e-27!71;UBERON:0003075!1.35e-27!71;UBERON:0007284!1.35e-27!71;UBERON:0000033!1.57e-26!63;UBERON:0001049!2.06e-26!52;UBERON:0005068!2.06e-26!52;UBERON:0006241!2.06e-26!52;UBERON:0007135!2.06e-26!52;UBERON:0000955!1.26e-24!50;UBERON:0006238!1.26e-24!50;UBERON:0002616!3.86e-24!49;UBERON:0003056!3.28e-21!49;UBERON:0002020!6.89e-19!34;UBERON:0003080!1.19e-18!40;UBERON:0002780!6.00e-18!39;UBERON:0001890!6.00e-18!39;UBERON:0006240!6.00e-18!39;UBERON:0002791!1.95e-15!29;UBERON:0003528!1.95e-15!29;UBERON:0001893!1.95e-15!29;UBERON:0000153!1.08e-11!94;UBERON:0007811!1.11e-10!86;UBERON:0000956!1.48e-10!21;UBERON:0001869!1.48e-10!21;UBERON:0000203!1.48e-10!21;UBERON:0000468!1.87e-09!333;UBERON:0000025!5.53e-09!114;UBERON:0002619!9.10e-09!17;UBERON:0003076!2.48e-08!12;UBERON:0003057!2.48e-08!12;UBERON:0004111!8.00e-08!122;UBERON:0000922!2.89e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.80e-34,73;UBERON:0001016,8.84e-33,75;UBERON:0002346,3.49e-31,64;UBERON:0003075,3.49e-31,64;UBERON:0007284,3.49e-31,64;UBERON:0000073,1.52e-29,54;UBERON:0004121,4.95e-28,95;UBERON:0000924,4.95e-28,95;UBERON:0006601,4.95e-28,95;UBERON:0001049,5.37e-28,52;UBERON:0005068,5.37e-28,52;UBERON:0006241,5.37e-28,52;UBERON:0007135,5.37e-28,52;UBERON:0010314,2.41e-26,92;UBERON:0010371,1.85e-25,73;UBERON:0000955,6.78e-24,47;UBERON:0006238,6.78e-24,47;UBERON:0002616,2.17e-23,46;UBERON:0003056,1.84e-22,49;UBERON:0002020,5.44e-20,34;UBERON:0003080,9.77e-20,40;UBERON:0002780,5.45e-19,39;UBERON:0001890,5.45e-19,39;UBERON:0006240,5.45e-19,39;UBERON:0003528,2.56e-16,29;UBERON:0002791,2.56e-16,29;UBERON:0001893,2.56e-16,29;UBERON:0000956,3.98e-11,21;UBERON:0001869,3.98e-11,21;UBERON:0000203,3.98e-11,21;UBERON:0002619,3.17e-09,17;UBERON:0003076,9.20e-09,12;UBERON:0003057,9.20e-09,12;UBERON:0000025,1.36e-07,114;UBERON:0002021,8.24e-07,10;UBERON:0000411,8.24e-07,10;UBERON:0001950,8.24e-07,10|phase1_expression=16.9757777931082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.33424243480484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,12.5182615095686,13.7355848519681,6.37089929929968,4.86074747685709,3.77963338388479,14.3752564364972,0,0,0,0.257259436035947,2.57880095944881,1.54701627683233,60.8972547187389,56.0730438028355,52.6080064910129,0.338844532069132,0.889294796111139,0,0.988866362566974,0,2.69640099466564,10.373894243682,12.5464430893258,18.2258016747782,16.8259969081106,58.2728008183759,60.2971116797905,20.8234358665422,19.9358579717932,19.3035945188104,48.450987639731,47.3720024296046,41.627370512442,57.3705351626343,54.709610874241,42.1939830150976,56.394965798279,51.2113975128829,38.3523601919793,46.8459450903132,45.8436812173111,53.310241506036,0.302904773332736,3.02286240427142,0.869593466105033,0,0,0.539703191637817,0,0,2.38755514223978,0,0,0,11.8308472612412,0,0,0,0,0,0,1.7127581957859,0,1.7813056687779,2.4287945747259,2.74018930480927,3.22861696158482,1.65794904607885,1.64624189989987,1.13099932196708,0,0.144599356919912,0,1.13236794963186,0.220841518460394,0.969750506270444,1.86391761218122,28.1069565131085,40.0043210013699,0.255457055208591,0,0,0,54.2242114645458,21.0450277296568,16.2094114225595,28.3333641913411,23.5258220743904,47.9990382932584,36.17980166411,2.03678727700633,0.497627882440372,0.758168275301024,1.89397670297827,9.62891277924007,14.9436367881757,10.2635413989049,11.7549757911858,12.5187158438443,13.3238269096244,10.3071897015702,10.0894314588216,9.26942369611222,12.4810012910761,10.7330185740009,7.89104636739269,8.06337022754234,2.089512999133,3.70407845534298,2.9855140022774,0,0,0,5.79952163099405,3.75241695969754,2.52086886045421,3.07768156260773,3.34499193970586,2.93107514486019,2.79040733700489,2.68273401399619,2.10177616260905,3.12663714835613,2.29834449710733,2.02672023864639,1.46199987425332,0.878200461164203,1.20785776884335,13.6688466566683,17.0821656549612,0.330418782983798,0,4.90562976231038,3.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| ||
|EntrezGene=20420 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=O88834 | |||
|association_with_transcript=14bp_to_NM_001159523,NM_009168,uc008dal.2,uc008dam.2_5end | |||
|description=CAGE_peak_1_at_Shd_5end | |||
|id=chr17:56109919..56110000,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.11e-15!44;CL:0000133!1.11e-15!44;CL:0002319!2.56e-15!43;CL:0000117!3.64e-15!23;CL:0000337!3.64e-15!23;CL:0000540!1.65e-14!33;CL:0000047!1.65e-14!33;CL:0000031!1.65e-14!33;CL:0000404!1.65e-14!33;CL:0000055!3.29e-11!50;CL:0000393!9.75e-11!39;CL:0000211!9.75e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.97e-16,23;CL:0000337,4.97e-16,23;CL:0000221,6.00e-16,44;CL:0000133,6.00e-16,44;CL:0002319,1.45e-15,43;CL:0000540,7.19e-15,33;CL:0000047,7.19e-15,33;CL:0000031,7.19e-15,33;CL:0000404,7.19e-15,33;CL:0000393,5.17e-11,39;CL:0000211,5.17e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.24e-32!73;UBERON:0005743!2.24e-32!73;UBERON:0000073!1.34e-31!75;UBERON:0001016!1.34e-31!75;UBERON:0004121!7.35e-28!102;UBERON:0000924!7.35e-28!102;UBERON:0006601!7.35e-28!102;UBERON:0002346!1.35e-27!71;UBERON:0003075!1.35e-27!71;UBERON:0007284!1.35e-27!71;UBERON:0000033!1.57e-26!63;UBERON:0001049!2.06e-26!52;UBERON:0005068!2.06e-26!52;UBERON:0006241!2.06e-26!52;UBERON:0007135!2.06e-26!52;UBERON:0000955!1.26e-24!50;UBERON:0006238!1.26e-24!50;UBERON:0002616!3.86e-24!49;UBERON:0003056!3.28e-21!49;UBERON:0002020!6.89e-19!34;UBERON:0003080!1.19e-18!40;UBERON:0002780!6.00e-18!39;UBERON:0001890!6.00e-18!39;UBERON:0006240!6.00e-18!39;UBERON:0002791!1.95e-15!29;UBERON:0003528!1.95e-15!29;UBERON:0001893!1.95e-15!29;UBERON:0000153!1.08e-11!94;UBERON:0007811!1.11e-10!86;UBERON:0000956!1.48e-10!21;UBERON:0001869!1.48e-10!21;UBERON:0000203!1.48e-10!21;UBERON:0000468!1.87e-09!333;UBERON:0000025!5.53e-09!114;UBERON:0002619!9.10e-09!17;UBERON:0003076!2.48e-08!12;UBERON:0003057!2.48e-08!12;UBERON:0004111!8.00e-08!122;UBERON:0000922!2.89e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.80e-34,73;UBERON:0001016,8.84e-33,75;UBERON:0002346,3.49e-31,64;UBERON:0003075,3.49e-31,64;UBERON:0007284,3.49e-31,64;UBERON:0000073,1.52e-29,54;UBERON:0004121,4.95e-28,95;UBERON:0000924,4.95e-28,95;UBERON:0006601,4.95e-28,95;UBERON:0001049,5.37e-28,52;UBERON:0005068,5.37e-28,52;UBERON:0006241,5.37e-28,52;UBERON:0007135,5.37e-28,52;UBERON:0010314,2.41e-26,92;UBERON:0010371,1.85e-25,73;UBERON:0000955,6.78e-24,47;UBERON:0006238,6.78e-24,47;UBERON:0002616,2.17e-23,46;UBERON:0003056,1.84e-22,49;UBERON:0002020,5.44e-20,34;UBERON:0003080,9.77e-20,40;UBERON:0002780,5.45e-19,39;UBERON:0001890,5.45e-19,39;UBERON:0006240,5.45e-19,39;UBERON:0003528,2.56e-16,29;UBERON:0002791,2.56e-16,29;UBERON:0001893,2.56e-16,29;UBERON:0000956,3.98e-11,21;UBERON:0001869,3.98e-11,21;UBERON:0000203,3.98e-11,21;UBERON:0002619,3.17e-09,17;UBERON:0003076,9.20e-09,12;UBERON:0003057,9.20e-09,12;UBERON:0000025,1.36e-07,114;UBERON:0002021,8.24e-07,10;UBERON:0000411,8.24e-07,10;UBERON:0001950,8.24e-07,10 | |||
|phase1_expression=16.9757777931082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.33424243480484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,12.5182615095686,13.7355848519681,6.37089929929968,4.86074747685709,3.77963338388479,14.3752564364972,0,0,0,0.257259436035947,2.57880095944881,1.54701627683233,60.8972547187389,56.0730438028355,52.6080064910129,0.338844532069132,0.889294796111139,0,0.988866362566974,0,2.69640099466564,10.373894243682,12.5464430893258,18.2258016747782,16.8259969081106,58.2728008183759,60.2971116797905,20.8234358665422,19.9358579717932,19.3035945188104,48.450987639731,47.3720024296046,41.627370512442,57.3705351626343,54.709610874241,42.1939830150976,56.394965798279,51.2113975128829,38.3523601919793,46.8459450903132,45.8436812173111,53.310241506036,0.302904773332736,3.02286240427142,0.869593466105033,0,0,0.539703191637817,0,0,2.38755514223978,0,0,0,11.8308472612412,0,0,0,0,0,0,1.7127581957859,0,1.7813056687779,2.4287945747259,2.74018930480927,3.22861696158482,1.65794904607885,1.64624189989987,1.13099932196708,0,0.144599356919912,0,1.13236794963186,0.220841518460394,0.969750506270444,1.86391761218122,28.1069565131085,40.0043210013699,0.255457055208591,0,0,0,54.2242114645458,21.0450277296568,16.2094114225595,28.3333641913411,23.5258220743904,47.9990382932584,36.17980166411,2.03678727700633,0.497627882440372,0.758168275301024,1.89397670297827,9.62891277924007,14.9436367881757,10.2635413989049,11.7549757911858,12.5187158438443,13.3238269096244,10.3071897015702,10.0894314588216,9.26942369611222,12.4810012910761,10.7330185740009,7.89104636739269,8.06337022754234,2.089512999133,3.70407845534298,2.9855140022774,0,0,0,5.79952163099405,3.75241695969754,2.52086886045421,3.07768156260773,3.34499193970586,2.93107514486019,2.79040733700489,2.68273401399619,2.10177616260905,3.12663714835613,2.29834449710733,2.02672023864639,1.46199987425332,0.878200461164203,1.20785776884335,13.6688466566683,17.0821656549612,0.330418782983798,0,4.90562976231038,3.0190767341857,2.83508414908605,2.8235693447268,3.55804870151792,2.85338439168839,0.474529061544512,1.97638745668813,1.50801125280162,1.98956472041151,2.53453313254856,0,1.51296634912286,0.597423819763102,6.44870863240478,7.31190480702264,7.88954149711563,12.0154283428735,14.9343415119072,13.4660774189412,19.0974342115257,15.7942858338174,10.5189147653721,9.62497878590044,0.296452627087149,0.333690211432188,0.393117990226406,0.224862112384854,0.202860121388503,0,0.50925170356284,0,0.162135226775035,0,1.43768206527355,0.744281895337007,0.312037673114561,0.252578877947112,0.179397413521912,0.482443521363367,0,6.63219941196697,2.93336957595647,2.71592137240301,3.05097322775053,2.68010011906905,1.19021820443007,0.390267295715598,4.41378403497335,2.43611158613652,3.50800491046472,1.3109065177259,0.518054945597687,0.433947175744535,0,0,0,0.827810238914197,51.3761887960934,48.4084265625799,0,0.757412781613119,5.36363973007636,3.12350995437311,6.46270193198397,0.955875191810208,2.89638276307112,2.26461224631066,2.83367491172426,6.72188473196017,7.11518000303742,15.7447445046685,0.283880170416537,3.73937767701236,2.44330439030364,2.3095817216155,0,2.91336763385978,1.209294227859,0.377210159511796,1.47650946440386,0,1.03371317267288,0.727067458955011,1.78248689192361,1.58018378967908,0,0,2.7235168460303,15.3051929926614,16.8166288917581,9.00215547132688,6.38424841112185,4.8159580752559,5.10101963866575,7.30715877875038,0.469343416127421,0.847328283455281,0,0.49465875882444,0.645857706783622,0.542816324353403,0.477489376012546,0.820704498725306,1.45740418314925,40.7935664423121,0.341741761595705,2.47664241555867,2.03713980106683,0.188368457004691,0,0.686334519619568,0,0,0.138199973804424,0.954670618015114,3.95419991976419,2.64315307264903,3.45617090629764,2.92723614420256,1.52853794622324,1.34864346384821,2.0663363931334,1.04702376793612,1.55537967950151,0,0,0.747582730219894,1.32366792365678,2.52786544847262,1.93739735216597,2.02747350588934,1.17357238645754,1.95306577265925,0.419437377702843,0.241584120826006,0.576060012515731,0,1.01362607645082,1.23253148597793,0.389762468933385,0.179026695667481,0.198681354781265,0,0.147689527174577,0,0,0,0.0974578807397524,0,0,0.680191150845634,0.665957860122194,0,0.503653849092235,0.19318959403219,0.187682475451182,2.19781949120718,0.214368379079066,0,19.2015626489803,17.0320337507655,20.0513429703789,23.8875923457726,27.4033007908257,24.1726047164704,20.925697507186,29.7211994127986,20.3914084042892,31.0656187051092,13.3885678383588,18.7541690498485,12.4635532200518,6.07766792670735,9.4325923182592,10.1113929647508,7.77863547305653,7.2112270033613,7.38114182061175,7.32821914115013,6.33698249725599,6.03604292435444,5.3375659257833,7.23484222175023,6.60507892989553,6.19181798667996,6.60540657885676,6.55891349576597,5.35711671044299,5.88795680537589,7.54312355247914,6.56660482789549,6.19934093863034,7.99405291477807,5.74067220533517,6.93839784711747,6.0366231048015,6.83981249738391,5.83957689537206,10.661703161497,6.287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| |||
|short_description=p1@Shd | |||
}} |
Revision as of 14:57, 13 September 2013
Short description: | p1@Shd |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Shd_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 14bp_to_NM_001159523, NM_009168, uc008dal.2, uc008dam.2_5end |
EntrezGene: | Shd |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.97e-16 | 23 |
neuroblast (sensu Vertebrata) | 4.97e-16 | 23 |
ectodermal cell | 6.00e-16 | 44 |
neurectodermal cell | 6.00e-16 | 44 |
neural cell | 1.45e-15 | 43 |
neuron | 7.19e-15 | 33 |
neuronal stem cell | 7.19e-15 | 33 |
neuroblast | 7.19e-15 | 33 |
electrically signaling cell | 7.19e-15 | 33 |
electrically responsive cell | 5.17e-11 | 39 |
electrically active cell | 5.17e-11 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.