FFCP PHASE1:Mm9::chr19:44769950..44769971,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=3199|UniProt=|association_with_transcript=-185bp_to_ENSMUST00000166501_5end|description=CAGE_peak_1_at_ENSMUST00000166501_5end|id=chr19:44769950..44769971,-|ontology_enrichment_celltype=CL:0002609!1.16e-15!6;CL:0000117!2.04e-11!23;CL:0000337!2.04e-11!23;CL:0002608!9.40e-09!3;CL:0000540!3.14e-07!33;CL:0000047!3.14e-07!33;CL:0000031!3.14e-07!33;CL:0000404!3.14e-07!33|ontology_enrichment_celltype_v019_2=CL:0002609,2.00e-33,6;CL:0002608,1.31e-17,3;CL:0000117,9.15e-14,23;CL:0000337,9.15e-14,23;CL:0000540,1.08e-09,33;CL:0000047,1.08e-09,33;CL:0000031,1.08e-09,33;CL:0000404,1.08e-09,33;CL:0000393,3.06e-08,39;CL:0000211,3.06e-08,39;CL:0002319,1.70e-07,43;CL:0000221,2.49e-07,44;CL:0000133,2.49e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!6.52e-11!50;UBERON:0006238!6.52e-11!50;UBERON:0002020!4.39e-10!34;UBERON:0002616!8.54e-10!49;UBERON:0001954!1.22e-09!7;UBERON:0003022!1.22e-09!7;UBERON:0002421!1.22e-09!7;UBERON:0000349!1.22e-09!7;UBERON:0002600!1.22e-09!7;UBERON:0001049!7.10e-09!52;UBERON:0005068!7.10e-09!52;UBERON:0006241!7.10e-09!52;UBERON:0007135!7.10e-09!52;UBERON:0000033!7.37e-09!63;UBERON:0002791!8.62e-09!29;UBERON:0003528!8.62e-09!29;UBERON:0001893!8.62e-09!29;UBERON:0000956!1.18e-08!21;UBERON:0001869!1.18e-08!21;UBERON:0000203!1.18e-08!21;UBERON:0002780!1.74e-08!39;UBERON:0001890!1.74e-08!39;UBERON:0006240!1.74e-08!39;UBERON:0003080!3.37e-08!40;UBERON:0001017!3.88e-08!73;UBERON:0005743!3.88e-08!73;UBERON:0000073!8.39e-08!75;UBERON:0001016!8.39e-08!75;UBERON:0002346!3.42e-07!71;UBERON:0003075!3.42e-07!71;UBERON:0007284!3.42e-07!71;UBERON:0003056!3.68e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001954,2.96e-29,7;UBERON:0003022,2.96e-29,7;UBERON:0002421,2.96e-29,7;UBERON:0000349,2.96e-29,7;UBERON:0002600,2.96e-29,7;UBERON:0000956,1.07e-21,21;UBERON:0001869,1.07e-21,21;UBERON:0000203,1.07e-21,21;UBERON:0003528,2.99e-21,29;UBERON:0002791,2.99e-21,29;UBERON:0001893,2.99e-21,29;UBERON:0002020,3.59e-18,34;UBERON:0002780,7.07e-16,39;UBERON:0001890,7.07e-16,39;UBERON:0006240,7.07e-16,39;UBERON:0003080,1.74e-15,40;UBERON:0002616,1.70e-13,46;UBERON:0000955,3.25e-13,47;UBERON:0006238,3.25e-13,47;UBERON:0003056,1.11e-12,49;UBERON:0002619,2.16e-12,17;UBERON:0001049,5.81e-12,52;UBERON:0005068,5.81e-12,52;UBERON:0006241,5.81e-12,52;UBERON:0007135,5.81e-12,52;UBERON:0000073,1.59e-11,54;UBERON:0002346,9.52e-10,64;UBERON:0003075,9.52e-10,64;UBERON:0007284,9.52e-10,64;UBERON:0010371,1.47e-08,73;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0010314,8.41e-07,92|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55534418462716,1.08004750665353,0.420649922702764,0,0.220868540951614,1.71487118900936,1.24599112323707,0.919218786610021,0,0.766124028511126,0.46081959976873,0,0,0,0,0,1.06958773443767,0,0,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457500602818626,0,0.347648640384553,0,0,0.648965052271031,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.25724871410318,5.86556290561921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0.243106717068294,0,0,0,0,0,0,0.25347929989024,0,0.187283014939765,0.128050304809739,0.114870937911227,0,0.231768651889711,0.192909220463705,0.412085900803307,0.294397840268795,0.685738504770831,0,0,0,0.188218760830661,0.169229215783353,0.182927972872773,0,0,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.429742108096597,0,0,0|short_description=p1@ENSMUST00000166501}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=3199 | |||
|UniProt= | |||
|association_with_transcript=-185bp_to_ENSMUST00000166501_5end | |||
|description=CAGE_peak_1_at_ENSMUST00000166501_5end | |||
|id=chr19:44769950..44769971,- | |||
|ontology_enrichment_celltype=CL:0002609!1.16e-15!6;CL:0000117!2.04e-11!23;CL:0000337!2.04e-11!23;CL:0002608!9.40e-09!3;CL:0000540!3.14e-07!33;CL:0000047!3.14e-07!33;CL:0000031!3.14e-07!33;CL:0000404!3.14e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,2.00e-33,6;CL:0002608,1.31e-17,3;CL:0000117,9.15e-14,23;CL:0000337,9.15e-14,23;CL:0000540,1.08e-09,33;CL:0000047,1.08e-09,33;CL:0000031,1.08e-09,33;CL:0000404,1.08e-09,33;CL:0000393,3.06e-08,39;CL:0000211,3.06e-08,39;CL:0002319,1.70e-07,43;CL:0000221,2.49e-07,44;CL:0000133,2.49e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!6.52e-11!50;UBERON:0006238!6.52e-11!50;UBERON:0002020!4.39e-10!34;UBERON:0002616!8.54e-10!49;UBERON:0001954!1.22e-09!7;UBERON:0003022!1.22e-09!7;UBERON:0002421!1.22e-09!7;UBERON:0000349!1.22e-09!7;UBERON:0002600!1.22e-09!7;UBERON:0001049!7.10e-09!52;UBERON:0005068!7.10e-09!52;UBERON:0006241!7.10e-09!52;UBERON:0007135!7.10e-09!52;UBERON:0000033!7.37e-09!63;UBERON:0002791!8.62e-09!29;UBERON:0003528!8.62e-09!29;UBERON:0001893!8.62e-09!29;UBERON:0000956!1.18e-08!21;UBERON:0001869!1.18e-08!21;UBERON:0000203!1.18e-08!21;UBERON:0002780!1.74e-08!39;UBERON:0001890!1.74e-08!39;UBERON:0006240!1.74e-08!39;UBERON:0003080!3.37e-08!40;UBERON:0001017!3.88e-08!73;UBERON:0005743!3.88e-08!73;UBERON:0000073!8.39e-08!75;UBERON:0001016!8.39e-08!75;UBERON:0002346!3.42e-07!71;UBERON:0003075!3.42e-07!71;UBERON:0007284!3.42e-07!71;UBERON:0003056!3.68e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,2.96e-29,7;UBERON:0003022,2.96e-29,7;UBERON:0002421,2.96e-29,7;UBERON:0000349,2.96e-29,7;UBERON:0002600,2.96e-29,7;UBERON:0000956,1.07e-21,21;UBERON:0001869,1.07e-21,21;UBERON:0000203,1.07e-21,21;UBERON:0003528,2.99e-21,29;UBERON:0002791,2.99e-21,29;UBERON:0001893,2.99e-21,29;UBERON:0002020,3.59e-18,34;UBERON:0002780,7.07e-16,39;UBERON:0001890,7.07e-16,39;UBERON:0006240,7.07e-16,39;UBERON:0003080,1.74e-15,40;UBERON:0002616,1.70e-13,46;UBERON:0000955,3.25e-13,47;UBERON:0006238,3.25e-13,47;UBERON:0003056,1.11e-12,49;UBERON:0002619,2.16e-12,17;UBERON:0001049,5.81e-12,52;UBERON:0005068,5.81e-12,52;UBERON:0006241,5.81e-12,52;UBERON:0007135,5.81e-12,52;UBERON:0000073,1.59e-11,54;UBERON:0002346,9.52e-10,64;UBERON:0003075,9.52e-10,64;UBERON:0007284,9.52e-10,64;UBERON:0010371,1.47e-08,73;UBERON:0001017,1.47e-08,73;UBERON:0001016,2.47e-08,75;UBERON:0010314,8.41e-07,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55534418462716,1.08004750665353,0.420649922702764,0,0.220868540951614,1.71487118900936,1.24599112323707,0.919218786610021,0,0.766124028511126,0.46081959976873,0,0,0,0,0,1.06958773443767,0,0,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457500602818626,0,0.347648640384553,0,0,0.648965052271031,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.25724871410318,5.86556290561921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0.243106717068294,0,0,0,0,0,0,0.25347929989024,0,0.187283014939765,0.128050304809739,0.114870937911227,0,0.231768651889711,0.192909220463705,0.412085900803307,0.294397840268795,0.685738504770831,0,0,0,0.188218760830661,0.169229215783353,0.182927972872773,0,0,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.429742108096597,0,0,0 | |||
|short_description=p1@ENSMUST00000166501 | |||
}} |
Revision as of 17:45, 13 September 2013
Short description: | p1@ENSMUST00000166501 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000166501_5end |
Coexpression cluster: | MCL_coexpression_mm9:3199 |
Association with transcript: | -185bp_to_ENSMUST00000166501_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 2.00e-33 | 6 |
hippocampal neuron | 1.31e-17 | 3 |
CNS neuron (sensu Vertebrata) | 9.15e-14 | 23 |
neuroblast (sensu Vertebrata) | 9.15e-14 | 23 |
neuron | 1.08e-09 | 33 |
neuronal stem cell | 1.08e-09 | 33 |
neuroblast | 1.08e-09 | 33 |
electrically signaling cell | 1.08e-09 | 33 |
electrically responsive cell | 3.06e-08 | 39 |
electrically active cell | 3.06e-08 | 39 |
neural cell | 1.70e-07 | 43 |
ectodermal cell | 2.49e-07 | 44 |
neurectodermal cell | 2.49e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 2.96e-29 | 7 |
lobe parts of cerebral cortex | 2.96e-29 | 7 |
hippocampal formation | 2.96e-29 | 7 |
limbic system | 2.96e-29 | 7 |
limbic lobe | 2.96e-29 | 7 |
cerebral cortex | 1.07e-21 | 21 |
cerebral hemisphere | 1.07e-21 | 21 |
pallium | 1.07e-21 | 21 |
brain grey matter | 2.99e-21 | 29 |
regional part of telencephalon | 2.99e-21 | 29 |
telencephalon | 2.99e-21 | 29 |
gray matter | 3.59e-18 | 34 |
regional part of forebrain | 7.07e-16 | 39 |
forebrain | 7.07e-16 | 39 |
future forebrain | 7.07e-16 | 39 |
anterior neural tube | 1.74e-15 | 40 |
regional part of brain | 1.70e-13 | 46 |
brain | 3.25e-13 | 47 |
future brain | 3.25e-13 | 47 |
pre-chordal neural plate | 1.11e-12 | 49 |
regional part of cerebral cortex | 2.16e-12 | 17 |
neural tube | 5.81e-12 | 52 |
neural rod | 5.81e-12 | 52 |
future spinal cord | 5.81e-12 | 52 |
neural keel | 5.81e-12 | 52 |
regional part of nervous system | 1.59e-11 | 54 |
neurectoderm | 9.52e-10 | 64 |
neural plate | 9.52e-10 | 64 |
presumptive neural plate | 9.52e-10 | 64 |
ecto-epithelium | 1.47e-08 | 73 |
central nervous system | 1.47e-08 | 73 |
nervous system | 2.47e-08 | 75 |
structure with developmental contribution from neural crest | 8.41e-07 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.